Clone Sequence Records
BS07627.3prime Sequence
902 bp (821 high quality bases) assembled on 2006-01-06
> BS07627.3prime
ATGGTCTAGAAAGCTTTCATAAGTTCGTCGTCTGCACCAGTCCACGCTCC
AGATGGAAGCACTCCAAGACGGCGGCGCCGACGGAGCTGCGTCGAGCCAC
CATGGCGTTGACCACGCTCCACTTGTTTAGCCGCGTATCGTATCGCTCCA
CGGAGTTGAGCGAAGAGCTGCCATCGTTGCCGCCCAAGGCGAAGAGGGCA
CCCTCCACCTCAACCACTTCATGGGTGGATCTTCGCGAGTGCATTGCTGC
GATGGGTTCCCAGCTGTTCCTGCGCAAACTGAATCGCTCTCCGCTGGACA
TGCACATGGTGCCATCATTACCACCAATGCAATACAGATGCCCGTCGGTG
GAGGCGACGCCGCAGCTGCTCCTGCGTGCCGACATGCTTGGCACCGGTTG
CCAGCGACCCACTCTGGGATCAAACCGCTCCACGCTCGACTGGTAGTTGG
TTGAATCGAAGCCGCCCAGACTGTAGATGCAATTTTCCAGCACAGCCAGT
CGGCAGTACCTTCTCCTTGTGCTCATCGCCGGACAGGAGCTCCAGATGCC
TGTGAGCGGATCATAGCGCTCCATGCTGCTCAGACAGGAGGCGCCATCGT
AACCGCCACAAACGTAGATCAAGGCATCGTAGGAGCAGATGCCCAGACAG
CTACGTTTCGTACCCATTGGGGTGATGTTGCTCCACTTGTTGGTCAGAGG
ATTGTAGCTCTCCGCCGTGGCCAGATCACTGACTCCATCGTAGCCGCCGA
CCACATACAACTGCTTGTGCAGGGATGTTACTCCGGATCGAGATCGTCGC
CACAACATTGGTGCCACTGGACTCAAAGAGTTAGAGCGCGGATTGTACAC
CTCGCACTCGTTGTGAATGGCGAAGAGACTGCCTCCTCCCCACGCAAATA
CG
BS07627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-PA | 1542 | CG15097-RA | 669..1542 | 890..17 | 4345 | 99.8 | Minus |
| CG15097-PB | 1854 | CG15097-RB | 981..1854 | 890..17 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RE | 3029 | CG15097-RE | 1372..2257 | 902..17 | 4385 | 99.7 | Minus |
| CG15097-RD | 3029 | CG15097-RD | 1372..2257 | 902..17 | 4385 | 99.7 | Minus |
| CG15097-RC | 3029 | CG15097-RC | 1372..2257 | 902..17 | 4385 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823237..18823908 | 231..902 | 3315 | 99.6 | Plus |
| 2R | 25286936 | 2R | 18822960..18823175 | 17..232 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:09:35 has no hits.
BS07627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:27 Download gff for
BS07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PA | 657..1542 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:36 Download gff for
BS07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PB | 969..1854 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:11 Download gff for
BS07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 1372..2262 | 11..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:20 Download gff for
BS07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 1372..2262 | 11..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:20 Download gff for
BS07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18822955..18823173 | 11..230 | 98 | <- | Plus |
| 2R | 18823237..18823908 | 231..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:11 Download gff for
BS07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14710460..14710678 | 11..230 | 98 | <- | Plus |
| arm_2R | 14710742..14711413 | 231..902 | 99 | | Plus |
BS07627.5prime Sequence
868 bp (867 high quality bases) assembled on 2006-01-06
> BS07627.5prime
GAAGTTATCAGTCGACATGCTGGAGCGCACTCAGGGATTAGTCCGGCTGC
ACGACGTGGACAGCTCAGCGCTGCGGCAGCTGATCGATTACACCTACACC
GGCGAGATCACGATCACCGAGCAGAACGTACAGGTGCTGCTGCCCGCGTC
CGGACTGCTGCAGATGCACTCGGTGCGGGATGCCTGCTGTAAGTTCTTGC
TGCGCCAGCTGCATCCTTCCAACTGCTTGGGCATACGCAGCTTCGCAGAT
GCCCACTCCTGCAAGGAGCTGCACACGCGGTCGCATAAGTACGCCCTGCA
GAACTTCCAGCAGGTTGTGGGTACCGAGGAGTTCCTGCTGCTGCCGTTCG
AGGAGGTTCGCGAGCTGATCTCCAACAGCCAGCTGAACATCAGCTCCGAG
GAGCGAGTCTTTGCCGCCGTCATCAATTGGGTGAAACATGACCTGCCCAC
ACGAAGACTCCACATTGCCGAGTTGATGTCAAACGTCAGACTGCCGCTGG
TGAGCAGGGATTTCCTCATGAGCTGCGTGGAAACGGAGACCCTCATGCGC
GATGACTCCGAGTGCAAGGAGCTGCTGCTGGAAGCCATGAAGTACCATTT
GCTTCCGGAGCAGCGCAGCATAATGGGCAGCCAGCGAACCCAGGAGCGTC
GTCCGGAGGGCATGAAACCCTACGTATTTGCGGTGGGAGGAGGCAGTCTC
TTCGCCATTCACAACGAGTGCGAGGTGTACAATCCGCGCTCTAACTCTTG
GAGTCCAGTGGCACCAATGTTGTGGCGACGATCTCGATCCGGAGTAACAT
CCCTGCACAAGCAGTTGTATGTGGTCGGCGGCTACGATGGAGTCAGTGAT
CTGGCCACGGCGGAGAGC
BS07627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-PB | 1854 | CG15097-RB | 309..1164 | 13..868 | 4280 | 100 | Plus |
| CG15097-PA | 1542 | CG15097-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RA | 2792 | CG15097-RA | 467..1330 | 5..868 | 4290 | 99.8 | Plus |
| CG15097-RE | 3029 | CG15097-RE | 712..1567 | 13..868 | 4280 | 100 | Plus |
| CG15097-RD | 3029 | CG15097-RD | 712..1567 | 13..868 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823713..18824576 | 868..5 | 4290 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:53:26 has no hits.
BS07627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:28 Download gff for
BS07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PB | 300..1164 | 4..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:38 Download gff for
BS07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PB | 300..1164 | 4..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:20 Download gff for
BS07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..1330 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:11 Download gff for
BS07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..1330 | 1..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:11 Download gff for
BS07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18823713..18824578 | 1..868 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:20 Download gff for
BS07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14711218..14712083 | 1..868 | 99 | | Minus |
BS07627.complete Sequence
1574 bp (1574 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635925
> BS07627.complete
GAAGTTATCAGTCGACATGCTGGAGCGCACTCAGGGATTAGTCCGGCTGC
ACGACGTGGACAGCTCAGCGCTGCGGCAGCTGATCGATTACACCTACACC
GGCGAGATCACGATCACCGAGCAGAACGTACAGGTGCTGCTGCCCGCGTC
CGGACTGCTGCAGATGCACTCGGTGCGGGATGCCTGCTGTAAGTTCTTGC
TGCGCCAGCTGCATCCTTCCAACTGCTTGGGCATACGCAGCTTCGCAGAT
GCCCACTCCTGCAAGGAGCTGCACACGCGGTCGCATAAGTACGCCCTGCA
GAACTTCCAGCAGGTTGTGGGTACCGAGGAGTTCCTGCTGCTGCCGTTCG
AGGAGGTTCGCGAGCTGATCTCCAACAGCCAGCTGAACATCAGCTCCGAG
GAGCGAGTCTTTGCCGCCGTCATCAATTGGGTGAAACATGACCTGCCCAC
ACGAAGACTCCACATTGCCGAGTTGATGTCAAACGTCAGACTGCCGCTGG
TGAGCAGGGATTTCCTCATGAGCTGCGTGGAAACGGAGACCCTCATGCGC
GATGACTCCGAGTGCAAGGAGCTGCTGCTGGAAGCCATGAAGTACCATTT
GCTTCCGGAGCAGCGCAGCATAATGGGCAGCCAGCGAACCCAGGAGCGTC
GTCCGGAGGGCATGAAACCCTACGTATTTGCGGTGGGAGGAGGCAGTCTC
TTCGCCATTCACAACGAGTGCGAGGTGTACAATCCGCGCTCTAACTCTTG
GAGTCCAGTGGCACCAATGTTGTGGCGACGATCTCGATCCGGAGTAACAT
CCCTGCACAAGCAGTTGTATGTGGTCGGCGGCTACGATGGAGTCAGTGAT
CTGGCCACGGCGGAGAGCTACAATCCTCTGACCAACAAGTGGAGCAACAT
CACCCCAATGGGTACGAAACGTAGCTGTCTGGGCATCTGCTCCTACGATG
CCTTGATCTACGTTTGTGGCGGTTACGATGGCGCCTCCTGTCTGAGCAGC
ATGGAGCGCTATGATCCGCTCACAGGCATCTGGAGCTCCTGTCCGGCGAT
GAGCACAAGGAGAAGGTACTGCCGACTGGCTGTGCTGGAAAATTGCATCT
ACAGTCTGGGCGGCTTCGATTCAACCAACTACCAGTCGAGCGTGGAGCGG
TTTGATCCCAGAGTGGGTCGCTGGCAACCGGTGCCAAGCATGTCGGCACG
CAGGAGCAGCTGCGGCGTCGCCTCCACCGACGGGCATCTGTATTGCATTG
GTGGTAATGATGGCACCATGTGCATGTCCAGCGGAGAGCGATTCAGTTTG
CGCAGGAACAGCTGGGAACCCATCGCAGCAATGCACTCGCGAAGATCCAC
CCATGAAGTGGTTGAGGTGGAGGGTGCCCTCTTCGCCTTGGGCGGCAACG
ATGGCAGCTCTTCGCTCAACTCCGTGGAGCGATACGATACGCGGCTAAAC
AAGTGGAGCGTGGTCAACGCCATGGTGGCTCGACGCAGCTCCGTCGGCGC
CGCCGTCTTGGAGTGCTTCCATCTGGAGCGTGGACTGGTGCAGACGACGA
ACTTATGAAAGCTTTCTAGACCAT
BS07627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RE | 2232 | CG15097-PE | 309..1854 | 13..1558 | 7730 | 100 | Plus |
| CG15097-RD | 2205 | CG15097-PD | 309..1854 | 13..1558 | 7730 | 100 | Plus |
| CG15097-RC | 1854 | CG15097-PC | 309..1854 | 13..1558 | 7730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RA | 2792 | CG15097-RA | 467..2020 | 5..1558 | 7740 | 99.9 | Plus |
| CG15097-RE | 3029 | CG15097-RE | 712..2257 | 13..1558 | 7730 | 100 | Plus |
| CG15097-RD | 3029 | CG15097-RD | 712..2257 | 13..1558 | 7730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823237..18824576 | 1344..5 | 6670 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18822960..18823175 | 1558..1343 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:30:15 has no hits.
BS07627.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:08 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RB | 300..1854 | 4..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:04 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..2025 | 1..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:07 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 479..2019 | 17..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:08 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..2025 | 1..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:25 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 479..2019 | 17..1557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:25 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18822961..18823173 | 1345..1557 | 100 | <- | Minus |
| 2R | 18823237..18824564 | 17..1344 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:07 Download gff for
BS07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14710466..14710678 | 1345..1557 | 100 | <- | Minus |
| arm_2R | 14710742..14712069 | 17..1344 | 100 | | Minus |
BS07627.pep Sequence
Translation from 16 to 1557
> BS07627.pep
MLERTQGLVRLHDVDSSALRQLIDYTYTGEITITEQNVQVLLPASGLLQM
HSVRDACCKFLLRQLHPSNCLGIRSFADAHSCKELHTRSHKYALQNFQQV
VGTEEFLLLPFEEVRELISNSQLNISSEERVFAAVINWVKHDLPTRRLHI
AELMSNVRLPLVSRDFLMSCVETETLMRDDSECKELLLEAMKYHLLPEQR
SIMGSQRTQERRPEGMKPYVFAVGGGSLFAIHNECEVYNPRSNSWSPVAP
MLWRRSRSGVTSLHKQLYVVGGYDGVSDLATAESYNPLTNKWSNITPMGT
KRSCLGICSYDALIYVCGGYDGASCLSSMERYDPLTGIWSSCPAMSTRRR
YCRLAVLENCIYSLGGFDSTNYQSSVERFDPRVGRWQPVPSMSARRSSCG
VASTDGHLYCIGGNDGTMCMSSGERFSLRRNSWEPIAAMHSRRSTHEVVE
VEGALFALGGNDGSSSLNSVERYDTRLNKWSVVNAMVARRSSVGAAVLEC
FHLERGLVQTTNL*
BS07627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-PE | 743 | CG15097-PE | 105..617 | 1..513 | 2698 | 100 | Plus |
| CG15097-PD | 734 | CG15097-PD | 105..617 | 1..513 | 2698 | 100 | Plus |
| CG15097-PC | 617 | CG15097-PC | 105..617 | 1..513 | 2698 | 100 | Plus |
| CG15097-PA | 513 | CG15097-PA | 1..513 | 1..513 | 2698 | 100 | Plus |
| dbo-PB | 620 | CG6224-PB | 107..603 | 3..498 | 1085 | 43.5 | Plus |
