Clone Sequence Records
BS07628.3prime Sequence
782 bp (780 high quality bases) assembled on 2006-01-06
> BS07628.3prime
ATGGTCTAGAAAGCTTCTAATGCGCGCTAGCACCATTTGTGGTGCTGGCA
TTATTGTTATTCCCGTTTTCGAGGTCTGTAGCCGTCAGTTTAGCCGGATT
AATGTTTTTTATGTCGTTTCCGTTCAGTTTATGCTGCAAATGCTGCAGCT
GCTGGGCGAGGTGCTCGTTCTCCGCCTGCGTAATGCTGTCAACATCAATG
GACATCGACATAGGTGAGTGGGGCGTAAGCGGAGTCACTGGATTGCTGAC
GCACAACTCCTCAATGGTGGAGTCGCTGTTACTTGAGGGCGTCGAGGAGC
GTGACCGCACTGGATACGAATCGTCCAGGGGCAGAGCAAAGCCCTGGGTG
ATCATCAGATCGGCAATATTTAGTTCAGAGTTGTCGGCTGGATCGAATAG
TTCCACTCCGGGCAGCGGGGTTCCCTCCTTGGCAGCAGCACTTACAGCGG
TGGTTGCCCGTGGACGCTCCTTGTAGGTCACCACTCGAGCAATCAGCTTT
CTCCAATGTGCCACCTCTGTCAGCTCTTCGAACTTTGCGATTGAAGACTT
TGGCCACGTAATAGGCTCCGTCTGGATGGTAGATTTTACATTGGCCAAGA
AGCATTCAACGGCTTGGAACCTGAGCGTGAGGAAATCAGTGCGCAGCTCG
CAGATATCAGCTGGCGAAATATATTCGCTATCTCCATAGTCCACGAAGTA
GAGATCGATCACCTGCTCCTTTGGATTGTACTGGTTAGGCATAATGTCCA
CGATTTCTGCGCGATACCACTTCTCGTCGAAC
BS07628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7082-PA | 1731 | CG7082-RA | 966..1731 | 782..17 | 3830 | 100 | Minus |
CG7082-PC | 1731 | CG7082-RC | 966..1731 | 782..17 | 3830 | 100 | Minus |
CG7082-PB | 1731 | CG7082-RB | 966..1731 | 782..17 | 3830 | 100 | Minus |
CG7082-PD | 1731 | CG7082-RD | 966..1731 | 782..17 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 2112 | CG7082-RD | 1095..1860 | 782..17 | 3830 | 100 | Minus |
papi-RB | 2235 | CG7082-RB | 1166..1931 | 782..17 | 3830 | 100 | Minus |
papi-RC | 2331 | CG7082-RC | 1262..2027 | 782..17 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2224743..2225240 | 514..17 | 2490 | 100 | Minus |
2L | 23513712 | 2L | 2224365..2224528 | 782..619 | 820 | 100 | Minus |
2L | 23513712 | 2L | 2224577..2224685 | 622..514 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:23:01 has no hits.
BS07628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:29 Download gff for
BS07628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PA | 966..1731 | 17..782 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:40 Download gff for
BS07628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PD | 966..1731 | 17..782 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:28 Download gff for
BS07628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 1262..2033 | 9..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:04 Download gff for
BS07628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 1262..2033 | 9..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:04 Download gff for
BS07628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2224365..2224526 | 621..782 | 100 | -> | Minus |
2L | 2224579..2224685 | 514..620 | 100 | -> | Minus |
2L | 2224744..2225246 | 9..513 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:28 Download gff for
BS07628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2224365..2224526 | 621..782 | 100 | -> | Minus |
arm_2L | 2224579..2224685 | 514..620 | 100 | -> | Minus |
arm_2L | 2224744..2225246 | 9..513 | 99 | | Minus |
BS07628.5prime Sequence
920 bp (797 high quality bases) assembled on 2006-01-06
> BS07628.5prime
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAG
CTATTATAGTAGTGCTGAAA
BS07628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7082-PA | 1731 | CG7082-RA | 1..904 | 17..920 | 4520 | 100 | Plus |
CG7082-PC | 1731 | CG7082-RC | 1..904 | 17..920 | 4520 | 100 | Plus |
CG7082-PB | 1731 | CG7082-RB | 1..904 | 17..920 | 4520 | 100 | Plus |
CG7082-PD | 1731 | CG7082-RD | 1..904 | 17..920 | 4520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 2112 | CG7082-RD | 128..1033 | 15..920 | 4530 | 100 | Plus |
papi-RB | 2235 | CG7082-RB | 199..1104 | 15..920 | 4530 | 100 | Plus |
papi-RC | 2331 | CG7082-RC | 295..1200 | 15..920 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2223704..2224303 | 321..920 | 3000 | 100 | Plus |
2L | 23513712 | 2L | 2223327..2223633 | 15..321 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:18:20 has no hits.
BS07628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:30 Download gff for
BS07628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PA | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:41 Download gff for
BS07628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-PD | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:17 Download gff for
BS07628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 284..1197 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:40 Download gff for
BS07628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 284..1197 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:40 Download gff for
BS07628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2223316..2223633 | 1..321 | 98 | -> | Plus |
2L | 2223705..2224300 | 322..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:17 Download gff for
BS07628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2223316..2223633 | 1..321 | 98 | -> | Plus |
arm_2L | 2223705..2224300 | 322..917 | 100 | | Plus |
BS07628.complete Sequence
1763 bp assembled on 2007-10-26
GenBank Submission: FJ635926
> BS07628.complete
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAG
CTATTATAGTAGTGCTGAAAACAGGGCCAAGCACGTGCTGACTGCTCCAT
ATGTGGGTCAGATTGTGGCAGCCGTGTTTAAGTTCGACGAGAAGTGGTAT
CGCGCAGAAATCGTGGACATTATGCCTAACCAGTACAATCCAAAGGAGCA
GGTGATCGATCTCTACTTCGTGGACTATGGAGATAGCGAATATATTTCGC
CAGCTGATATCTGCGAGCTGCGCACTGATTTCCTCACGCTCAGGTTCCAA
GCCGTTGAATGCTTCTTGGCCAATGTAAAATCTACCATCCAGACGGAGCC
TATTACGTGGCCAAAGTCTTCAATCGCAAAGTTCGAAGAGCTGACAGAGG
TGGCACATTGGAGAAAGCTGATTGCTCGAGTGGTGACCTACAAGGAGCGT
CCACGGGCAACCACCGCTGTAAGTGCTGCTGCCAAGGAGGGAACCCCGCT
GCCCGGAGTGGAACTATTCGATCCAGCCGACAACTCTGAACTAAATATTG
CCGATCTGATGATCACCCAGGGCTTTGCTCTGCCCCTGGACGATTCGTAT
CCAGTGCGGTCACGCTCCTCGACGCCCTCAAGTAACAGCGACTCCACCAT
TGAGGAGTTGTGCGTCAGCAATCCAGTGACTCCGCTTACGCCCCACTCAC
CTATGTCGATGTCCATTGATGTTGACAGCATTACGCAGGCGGAGAACGAG
CACCTCGCCCAGCAGCTGCAGCATTTGCAGCATAAACTGAACGGAAACGA
CATAAAAAACATTAATCCGGCTAAACTGACGGCTACAGACCTCGAAAACG
GGAATAACAATAATGCCAGCACCACAAATGGTGCTAGCGCGCATTAGAAG
CTTTCTAGACCAT
BS07628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 1731 | CG7082-PD | 1..1731 | 17..1747 | 8655 | 100 | Plus |
papi-RB | 1731 | CG7082-PB | 1..1731 | 17..1747 | 8655 | 100 | Plus |
papi-RC | 1731 | CG7082-PC | 1..1731 | 17..1747 | 8655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-RD | 2112 | CG7082-RD | 128..1860 | 15..1747 | 8665 | 100 | Plus |
papi-RB | 2235 | CG7082-RB | 199..1931 | 15..1747 | 8665 | 100 | Plus |
papi-RC | 2331 | CG7082-RC | 295..2027 | 15..1747 | 8665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2223704..2224528 | 321..1145 | 4125 | 100 | Plus |
2L | 23513712 | 2L | 2224743..2225240 | 1250..1747 | 2490 | 100 | Plus |
2L | 23513712 | 2L | 2223327..2223633 | 15..321 | 1535 | 100 | Plus |
2L | 23513712 | 2L | 2224577..2224685 | 1142..1250 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:56:35 has no hits.
BS07628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:54 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-RB | 1..1731 | 17..1747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:22 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-RB | 188..1937 | 1..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:41 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 302..2027 | 22..1747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:20 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7082-RB | 206..1931 | 22..1747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:11 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
papi-RC | 302..2027 | 22..1747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:11 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2223705..2224526 | 322..1143 | 100 | -> | Plus |
2L | 2223334..2223633 | 22..321 | 100 | -> | Plus |
2L | 2224579..2224685 | 1144..1250 | 100 | -> | Plus |
2L | 2224744..2225240 | 1251..1747 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:41 Download gff for
BS07628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2223334..2223633 | 22..321 | 100 | -> | Plus |
arm_2L | 2223705..2224526 | 322..1143 | 100 | -> | Plus |
arm_2L | 2224579..2224685 | 1144..1250 | 100 | -> | Plus |
arm_2L | 2224744..2225240 | 1251..1747 | 100 | | Plus |
BS07628.pep Sequence
Translation from 16 to 1746
> BS07628.pep
MLRNTPFGATPTYKLLLGFGLCSLGGAMLYAYFKTRNDEEEADSGGQRPA
SGIRGQTEEQKPQKEVCLKIVVDNEHVPLIMGRGGSNIKLIEEKTLAKIR
LRDKDSGHKFCDISGVPDAVKAARALLIKEIERAPVVKVELQVPQRLASK
INGRGGELLQEIRSSSLAKLNIDLNGRNGKAKITIIGNQKQVNIARKMLD
DQIEEDEELVRSMEEVEQRREPRRSPTNSIASSMYSSQTSLSSHTQPRDK
LMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKLDSMVQEMTSYYSSA
ENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLY
FVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPK
SSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVEL
FDPADNSELNIADLMITQGFALPLDDSYPVRSRSSTPSSNSDSTIEELCV
SNPVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNIN
PAKLTATDLENGNNNNASTTNGASAH*
BS07628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
papi-PD | 576 | CG7082-PD | 1..576 | 1..576 | 2940 | 100 | Plus |
papi-PB | 576 | CG7082-PB | 1..576 | 1..576 | 2940 | 100 | Plus |
papi-PC | 576 | CG7082-PC | 1..576 | 1..576 | 2940 | 100 | Plus |
papi-PA | 576 | CG7082-PA | 1..576 | 1..576 | 2940 | 100 | Plus |
spoon-PA | 585 | CG3249-PA | 291..546 | 140..425 | 185 | 25.8 | Plus |