Clone BS07628 Report

Search the DGRC for BS07628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptpapi-RA
Protein status:BS07628.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07628.3prime Sequence

782 bp (780 high quality bases) assembled on 2006-01-06

> BS07628.3prime
ATGGTCTAGAAAGCTTCTAATGCGCGCTAGCACCATTTGTGGTGCTGGCA
TTATTGTTATTCCCGTTTTCGAGGTCTGTAGCCGTCAGTTTAGCCGGATT
AATGTTTTTTATGTCGTTTCCGTTCAGTTTATGCTGCAAATGCTGCAGCT
GCTGGGCGAGGTGCTCGTTCTCCGCCTGCGTAATGCTGTCAACATCAATG
GACATCGACATAGGTGAGTGGGGCGTAAGCGGAGTCACTGGATTGCTGAC
GCACAACTCCTCAATGGTGGAGTCGCTGTTACTTGAGGGCGTCGAGGAGC
GTGACCGCACTGGATACGAATCGTCCAGGGGCAGAGCAAAGCCCTGGGTG
ATCATCAGATCGGCAATATTTAGTTCAGAGTTGTCGGCTGGATCGAATAG
TTCCACTCCGGGCAGCGGGGTTCCCTCCTTGGCAGCAGCACTTACAGCGG
TGGTTGCCCGTGGACGCTCCTTGTAGGTCACCACTCGAGCAATCAGCTTT
CTCCAATGTGCCACCTCTGTCAGCTCTTCGAACTTTGCGATTGAAGACTT
TGGCCACGTAATAGGCTCCGTCTGGATGGTAGATTTTACATTGGCCAAGA
AGCATTCAACGGCTTGGAACCTGAGCGTGAGGAAATCAGTGCGCAGCTCG
CAGATATCAGCTGGCGAAATATATTCGCTATCTCCATAGTCCACGAAGTA
GAGATCGATCACCTGCTCCTTTGGATTGTACTGGTTAGGCATAATGTCCA
CGATTTCTGCGCGATACCACTTCTCGTCGAAC

BS07628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7082-PA 1731 CG7082-RA 966..1731 782..17 3830 100 Minus
CG7082-PC 1731 CG7082-RC 966..1731 782..17 3830 100 Minus
CG7082-PB 1731 CG7082-RB 966..1731 782..17 3830 100 Minus
CG7082-PD 1731 CG7082-RD 966..1731 782..17 3830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 2112 CG7082-RD 1095..1860 782..17 3830 100 Minus
papi-RB 2235 CG7082-RB 1166..1931 782..17 3830 100 Minus
papi-RC 2331 CG7082-RC 1262..2027 782..17 3830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2224743..2225240 514..17 2490 100 Minus
2L 23513712 2L 2224365..2224528 782..619 820 100 Minus
2L 23513712 2L 2224577..2224685 622..514 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:23:01 has no hits.

BS07628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:29 Download gff for BS07628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PA 966..1731 17..782 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:40 Download gff for BS07628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PD 966..1731 17..782 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:28 Download gff for BS07628.3prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 1262..2033 9..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:04 Download gff for BS07628.3prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 1262..2033 9..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:04 Download gff for BS07628.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2224365..2224526 621..782 100 -> Minus
2L 2224579..2224685 514..620 100 -> Minus
2L 2224744..2225246 9..513 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:28 Download gff for BS07628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2224365..2224526 621..782 100 -> Minus
arm_2L 2224579..2224685 514..620 100 -> Minus
arm_2L 2224744..2225246 9..513 99   Minus

BS07628.5prime Sequence

920 bp (797 high quality bases) assembled on 2006-01-06

> BS07628.5prime
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAG
CTATTATAGTAGTGCTGAAA

BS07628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7082-PA 1731 CG7082-RA 1..904 17..920 4520 100 Plus
CG7082-PC 1731 CG7082-RC 1..904 17..920 4520 100 Plus
CG7082-PB 1731 CG7082-RB 1..904 17..920 4520 100 Plus
CG7082-PD 1731 CG7082-RD 1..904 17..920 4520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 2112 CG7082-RD 128..1033 15..920 4530 100 Plus
papi-RB 2235 CG7082-RB 199..1104 15..920 4530 100 Plus
papi-RC 2331 CG7082-RC 295..1200 15..920 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2223704..2224303 321..920 3000 100 Plus
2L 23513712 2L 2223327..2223633 15..321 1535 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:18:20 has no hits.

BS07628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:30 Download gff for BS07628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PA 1..901 17..917 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:41 Download gff for BS07628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7082-PD 1..901 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:17 Download gff for BS07628.5prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 284..1197 1..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:40 Download gff for BS07628.5prime
Subject Subject Range Query Range Percent Splice Strand
papi-RC 284..1197 1..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:40 Download gff for BS07628.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2223316..2223633 1..321 98 -> Plus
2L 2223705..2224300 322..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:17 Download gff for BS07628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2223316..2223633 1..321 98 -> Plus
arm_2L 2223705..2224300 322..917 100   Plus

BS07628.complete Sequence

1763 bp assembled on 2007-10-26

GenBank Submission: FJ635926

> BS07628.complete
GAAGTTATCAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCA
CCTACAAACTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATG
CTATATGCCTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGG
TGGCCAACGGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGC
CCCAGAAGGAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCC
CTGATAATGGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGAC
CCTGGCCAAGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCG
ACATTAGCGGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATC
AAGGAAATTGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCA
GAGGCTGGCCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGA
TCCGGAGCAGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAAT
GGAAAGGCCAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGC
CCGAAAAATGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGT
CCATGGAGGAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAAC
AGCATTGCGTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACAC
TCAGCCCAGAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGG
AGGTTTATGTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTT
ATCGGACCGCAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAG
CTATTATAGTAGTGCTGAAAACAGGGCCAAGCACGTGCTGACTGCTCCAT
ATGTGGGTCAGATTGTGGCAGCCGTGTTTAAGTTCGACGAGAAGTGGTAT
CGCGCAGAAATCGTGGACATTATGCCTAACCAGTACAATCCAAAGGAGCA
GGTGATCGATCTCTACTTCGTGGACTATGGAGATAGCGAATATATTTCGC
CAGCTGATATCTGCGAGCTGCGCACTGATTTCCTCACGCTCAGGTTCCAA
GCCGTTGAATGCTTCTTGGCCAATGTAAAATCTACCATCCAGACGGAGCC
TATTACGTGGCCAAAGTCTTCAATCGCAAAGTTCGAAGAGCTGACAGAGG
TGGCACATTGGAGAAAGCTGATTGCTCGAGTGGTGACCTACAAGGAGCGT
CCACGGGCAACCACCGCTGTAAGTGCTGCTGCCAAGGAGGGAACCCCGCT
GCCCGGAGTGGAACTATTCGATCCAGCCGACAACTCTGAACTAAATATTG
CCGATCTGATGATCACCCAGGGCTTTGCTCTGCCCCTGGACGATTCGTAT
CCAGTGCGGTCACGCTCCTCGACGCCCTCAAGTAACAGCGACTCCACCAT
TGAGGAGTTGTGCGTCAGCAATCCAGTGACTCCGCTTACGCCCCACTCAC
CTATGTCGATGTCCATTGATGTTGACAGCATTACGCAGGCGGAGAACGAG
CACCTCGCCCAGCAGCTGCAGCATTTGCAGCATAAACTGAACGGAAACGA
CATAAAAAACATTAATCCGGCTAAACTGACGGCTACAGACCTCGAAAACG
GGAATAACAATAATGCCAGCACCACAAATGGTGCTAGCGCGCATTAGAAG
CTTTCTAGACCAT

BS07628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 1731 CG7082-PD 1..1731 17..1747 8655 100 Plus
papi-RB 1731 CG7082-PB 1..1731 17..1747 8655 100 Plus
papi-RC 1731 CG7082-PC 1..1731 17..1747 8655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
papi-RD 2112 CG7082-RD 128..1860 15..1747 8665 100 Plus
papi-RB 2235 CG7082-RB 199..1931 15..1747 8665 100 Plus
papi-RC 2331 CG7082-RC 295..2027 15..1747 8665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2223704..2224528 321..1145 4125 100 Plus
2L 23513712 2L 2224743..2225240 1250..1747 2490 100 Plus
2L 23513712 2L 2223327..2223633 15..321 1535 100 Plus
2L 23513712 2L 2224577..2224685 1142..1250 545 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:56:35 has no hits.

BS07628.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:54 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 1..1731 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:22 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 188..1937 1..1755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:41 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 302..2027 22..1747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:20 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7082-RB 206..1931 22..1747 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:11 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
papi-RC 302..2027 22..1747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:11 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2223705..2224526 322..1143 100 -> Plus
2L 2223334..2223633 22..321 100 -> Plus
2L 2224579..2224685 1144..1250 100 -> Plus
2L 2224744..2225240 1251..1747 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:41 Download gff for BS07628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2223334..2223633 22..321 100 -> Plus
arm_2L 2223705..2224526 322..1143 100 -> Plus
arm_2L 2224579..2224685 1144..1250 100 -> Plus
arm_2L 2224744..2225240 1251..1747 100   Plus

BS07628.pep Sequence

Translation from 16 to 1746

> BS07628.pep
MLRNTPFGATPTYKLLLGFGLCSLGGAMLYAYFKTRNDEEEADSGGQRPA
SGIRGQTEEQKPQKEVCLKIVVDNEHVPLIMGRGGSNIKLIEEKTLAKIR
LRDKDSGHKFCDISGVPDAVKAARALLIKEIERAPVVKVELQVPQRLASK
INGRGGELLQEIRSSSLAKLNIDLNGRNGKAKITIIGNQKQVNIARKMLD
DQIEEDEELVRSMEEVEQRREPRRSPTNSIASSMYSSQTSLSSHTQPRDK
LMASKGEGKPMEVYVSAVASPTKFWVQLIGPQSKKLDSMVQEMTSYYSSA
ENRAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLY
FVDYGDSEYISPADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPK
SSIAKFEELTEVAHWRKLIARVVTYKERPRATTAVSAAAKEGTPLPGVEL
FDPADNSELNIADLMITQGFALPLDDSYPVRSRSSTPSSNSDSTIEELCV
SNPVTPLTPHSPMSMSIDVDSITQAENEHLAQQLQHLQHKLNGNDIKNIN
PAKLTATDLENGNNNNASTTNGASAH*

BS07628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
papi-PD 576 CG7082-PD 1..576 1..576 2940 100 Plus
papi-PB 576 CG7082-PB 1..576 1..576 2940 100 Plus
papi-PC 576 CG7082-PC 1..576 1..576 2940 100 Plus
papi-PA 576 CG7082-PA 1..576 1..576 2940 100 Plus
spoon-PA 585 CG3249-PA 291..546 140..425 185 25.8 Plus