Clone Sequence Records
BS07634.3prime Sequence
943 bp (809 high quality bases) assembled on 2006-01-06
> BS07634.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTTTCAAGGTCGAGCCAAATGCCCCCA
CGCAGACCAGTGATAATTTGGCCGGGTTCATAATCATTGTCTTTGCGGGT
TTTGTCATTGATCTTGACATTGAACTTTGATATCAGTTCCACAATAGCAG
CCTTAATCTGGACCGTCGCAAATCGCATTCCAATGCACACACGCGGTCCA
TCCCCGAATCCCATGAAGACACCCCGTTCCCTAAATGTTTTTGCAGCATC
TGGCTCCAGGAATCGCTCGGGCTGGAAGGACTGGGGATTGGGAAAGAATT
CCTCATCCAGCATGAAGCAGTAGTGAGGTACAACCACAGTGGTGCCCTTC
TCCACGACGAAGTTGGGACCTTCCTTGTTGGGAATCTCGATGGATTCGGT
GCACAGTTTATTCGACATAAATCCGGGCGGGAAGAGTCGGATGGTTTCCT
GCACACAAGCGTCCAGGTAGGGCAAATCGCTAAGCTTTTCAAAGGCAATG
GTGCCATCCTGCAGATGGGAACGAATCTCCTCTCGCAGAAGATTCTGTGC
CTCCTTATTACGACCCAGATTGAGCAGTATGTGAGCCAAGACTGTGGCCG
TCGTTTCGAATCCGTCGAGCAGGAAGGTCATGGAATAGGCCAGCAATTGA
CGATTGTCCAGGTTGCGCTTCTCACCCAGTTGCAAGATGTAGTCCAGGAA
GTCGGACCGCTCGAACTGCTTTCCCGCCGCCAACTGGGCACGACGTGTCT
CTACCGCACTGCCCATCAGGTCGACAAAGAAGCGTTCCACATCCACTGGC
ACGAAGCGTAGCTTAAATCAATGACTTAGCGATGGGAAGGAACTAGTCAG
TATAAAGAACAGTACAAAGGTCCAGGGCTGGTTGAAGAGATCATTGATTT
TCGACATTTATGGTGTGGGCTTATCCGAAAAAGCTTCAGCGCC
BS07634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8864-PA | 1518 | Cyp28a5-RA | 719..1518 | 816..17 | 4000 | 100 | Minus |
| CG8864-PA | 1518 | Cyp28a5-RA | 627..715 | 908..820 | 420 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28a5-RA | 1766 | CG8864-RA | 650..1577 | 943..16 | 4490 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13978246..13978741 | 943..448 | 2330 | 98 | Minus |
| 2L | 23513712 | 2L | 13978807..13979075 | 448..180 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 13979215..13979380 | 181..16 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:26:53 has no hits.
BS07634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:42 Download gff for
BS07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8864-PA | 592..1518 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:56 Download gff for
BS07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8864-PA | 592..1518 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:51:30 Download gff for
BS07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 650..1581 | 11..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:28 Download gff for
BS07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 650..1581 | 11..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:28 Download gff for
BS07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13978246..13978741 | 448..943 | 98 | -> | Minus |
| 2L | 13978808..13979074 | 181..447 | 100 | -> | Minus |
| 2L | 13979216..13979384 | 11..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:51:30 Download gff for
BS07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13978246..13978741 | 448..943 | 98 | -> | Minus |
| arm_2L | 13978808..13979074 | 181..447 | 100 | -> | Minus |
| arm_2L | 13979216..13979384 | 11..180 | 98 | | Minus |
BS07634.5prime Sequence
953 bp (797 high quality bases) assembled on 2006-01-06
> BS07634.5prime
GAAGTTATCAGTCGACATGGTTCTGATTACTTTGACCCTGGTTTCGTTGG
TGGTGGGCCTGCTGTATGCCGTGCTGGTATGGAACTATGACTATTGGAGG
AAACGGGGCGTTCCTGGTCCCAAGCCAAAGCTATTGTGCGGAAACTATCC
AAACATGTTTACTATGAAGCGGCATGCAATCTACGATCTAGACGATATAT
ACAGGCAGTATAAGAACAAGTACGATGCTGTGGGCATTTTTGGCAGCCGC
TCTCCACAGCTGCTGGTGATCAATCCCGCGTTGGCGCGTCGAGTCTTTGT
GTCCAACTTTAAGAACTTCCACGACAATGAGATCGCCAAGAATATTGACG
AGAAAACCGATTTCATTTTCGCCAACAATCCGTTCTCGTTAACTGGCGAA
AAGTGGAAAACTCGAAGGGCGGACGTAACGCCTGGTCTTACGATGGGACG
GATAAAGACAGTCTATCCGGTGACAAACAAGGTGTGCCAAAAGTTGACCG
AGTGGGTGGAGAAGCAATTGCGTCTGGGTTCTAAAGACGGCATCGATGCC
AAGCACATGAGTCTCTGCTTCACAACAGAGATGGTCACCGATTGTGTTTT
GGGTCTGGGCGCTGAAAGCTTTTCGGATAAGCCCACACCCATAATGTCGA
AAATCAATGATCTCTTCAACCAGCCCTGGACCTTTGTACTGTTCTTTATA
CTGACTAGTTCCTTCCCATCGCTAAGTCATTTGATTAAGCTACGCTTCGT
GCCAGTGGATGTGGAACGCTTCTTTGTCGACCTGATGGGCAGTGCGGTAG
AGACACGTCGTGCCCAGTTGGCGGCGGGAAAGCAGTTCGAGCGGTCCGAC
TTCCTGGACTACATCTTTGCACTGGGTGAGAAGCGCAACCTGGACAATCG
TCAATTGCTGGCCTATTCCATGAACTTCCTGCTCGACGGATTCAAAACGA
CGG
BS07634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8864-PA | 1518 | Cyp28a5-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
| CG8864-PA | 1518 | Cyp28a5-RA | 855..937 | 871..953 | 365 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28a5-RA | 1766 | CG8864-RA | 59..995 | 17..953 | 4595 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13978195..13978591 | 557..953 | 1895 | 98.5 | Plus |
| 2L | 23513712 | 2L | 13977685..13977938 | 198..451 | 1255 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13977360..13977548 | 17..205 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 13978002..13978107 | 451..556 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:18:12 has no hits.
BS07634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:43 Download gff for
BS07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8864-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:57 Download gff for
BS07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8864-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:14 Download gff for
BS07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 53..995 | 12..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:13 Download gff for
BS07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 53..995 | 12..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:13 Download gff for
BS07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13977354..13977547 | 12..204 | 98 | -> | Plus |
| 2L | 13977692..13977938 | 205..451 | 100 | -> | Plus |
| 2L | 13978003..13978107 | 452..556 | 100 | -> | Plus |
| 2L | 13978195..13978591 | 557..953 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:14 Download gff for
BS07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13977354..13977547 | 12..204 | 98 | -> | Plus |
| arm_2L | 13977692..13977938 | 205..451 | 100 | -> | Plus |
| arm_2L | 13978003..13978107 | 452..556 | 100 | -> | Plus |
| arm_2L | 13978195..13978591 | 557..953 | 98 | | Plus |
BS07634.complete Sequence
1550 bp (1550 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635928
> BS07634.complete
GAAGTTATCAGTCGACATGGTTCTGATTACTTTGACCCTGGTTTCGTTGG
TGGTGGGCCTGCTGTATGCCGTGCTGGTATGGAACTATGACTATTGGAGG
AAACGGGGCGTTCCTGGTCCCAAGCCAAAGCTATTGTGCGGAAACTATCC
AAACATGTTTACTATGAAGCGGCATGCAATCTACGATCTAGACGATATAT
ACAGGCAGTATAAGAACAAGTACGATGCTGTGGGCATTTTTGGCAGCCGC
TCTCCACAGCTGCTGGTGATCAATCCCGCGTTGGCGCGTCGAGTCTTTGT
GTCCAACTTTAAGAACTTCCACGACAATGAGATCGCCAAGAATATTGACG
AGAAAACCGATTTCATTTTCGCCAACAATCCGTTCTCGTTAACTGGCGAA
AAGTGGAAAACTCGAAGGGCGGACGTAACGCCTGGTCTTACGATGGGACG
GATAAAGACAGTCTATCCGGTGACAAACAAGGTGTGCCAAAAGTTGACCG
AGTGGGTGGAGAAGCAATTGCGTCTGGGTTCTAAAGACGGCATCGATGCC
AAGCACATGAGTCTCTGCTTCACAACAGAGATGGTCACCGATTGTGTTTT
GGGTCTGGGCGCTGAAAGCTTTTCGGATAAGCCCACACCCATAATGTCGA
AAATCAATGATCTCTTCAACCAGCCCTGGACCTTTGTACTGTTCTTTATA
CTGACTAGTTCCTTCCCATCGCTAAGTCATTTGATTAAGCTACGCTTCGT
GCCAGTGGATGTGGAACGCTTCTTTGTCGACCTGATGGGCAGTGCGGTAG
AGACACGTCGTGCCCAGTTGGCGGCGGGAAAGCAGTTCGAGCGGTCCGAC
TTCCTGGACTACATCTTGCAACTGGGTGAGAAGCGCAACCTGGACAATCG
TCAATTGCTGGCCTATTCCATGACCTTCCTGCTCGACGGATTCGAAACGA
CGGCCACAGTCTTGGCTCACATACTGCTCAATCTGGGTCGTAATAAGGAG
GCACAGAATCTTCTGCGAGAGGAGATTCGTTCCCATCTGCAGGATGGCAC
CATTGCCTTTGAAAAGCTTAGCGATTTGCCCTACCTGGACGCTTGTGTGC
AGGAAACCATCCGACTCTTCCCGCCCGGATTTATGTCGAATAAACTGTGC
ACCGAATCCATCGAGATTCCCAACAAGGAAGGTCCCAACTTCGTCGTGGA
GAAGGGCACCACTGTGGTTGTACCTCACTACTGCTTCATGCTGGATGAGG
AATTCTTTCCCAATCCCCAGTCCTTCCAGCCCGAGCGATTCCTGGAGCCA
GATGCTGCAAAAACATTTAGGGAACGGGGTGTCTTCATGGGATTCGGGGA
TGGACCGCGTGTGTGCATTGGAATGCGATTTGCGACGGTCCAGATTAAGG
CTGCTATTGTGGAACTGATATCAAAGTTCAATGTCAAGATCAATGACAAA
ACCCGCAAAGACAATGATTATGAACCCGGCCAAATTATCACTGGTCTGCG
TGGGGGCATTTGGCTCGACCTTGAAAAGCTTTAGAAGCTTTCTAGACCAT
BS07634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28a5-RA | 1518 | CG8864-PA | 1..1518 | 17..1534 | 7575 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28a5-RA | 1766 | CG8864-RA | 59..1577 | 17..1535 | 7580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13978195..13978741 | 557..1103 | 2720 | 99.8 | Plus |
| 2L | 23513712 | 2L | 13978807..13979075 | 1103..1371 | 1345 | 100 | Plus |
| 2L | 23513712 | 2L | 13977685..13977938 | 198..451 | 1255 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13977360..13977548 | 17..205 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 13979215..13979380 | 1370..1535 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 13978002..13978107 | 451..556 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:06:32 has no hits.
BS07634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:09 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 1..1518 | 17..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:06 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 52..1580 | 12..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:24 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 59..1576 | 17..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:10 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 52..1580 | 12..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:08 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 59..1576 | 17..1534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:08 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13977360..13977547 | 17..204 | 100 | -> | Plus |
| 2L | 13977692..13977938 | 205..451 | 100 | -> | Plus |
| 2L | 13978003..13978107 | 452..556 | 100 | -> | Plus |
| 2L | 13978195..13978741 | 557..1103 | 99 | -> | Plus |
| 2L | 13978808..13979074 | 1104..1370 | 100 | -> | Plus |
| 2L | 13979216..13979379 | 1371..1534 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:24 Download gff for
BS07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13977692..13977938 | 205..451 | 100 | -> | Plus |
| arm_2L | 13978003..13978107 | 452..556 | 100 | -> | Plus |
| arm_2L | 13977360..13977547 | 17..204 | 100 | -> | Plus |
| arm_2L | 13978195..13978741 | 557..1103 | 99 | -> | Plus |
| arm_2L | 13978808..13979074 | 1104..1370 | 100 | -> | Plus |
| arm_2L | 13979216..13979379 | 1371..1534 | 100 | | Plus |
BS07634.pep Sequence
Translation from 16 to 1533
> BS07634.pep
MVLITLTLVSLVVGLLYAVLVWNYDYWRKRGVPGPKPKLLCGNYPNMFTM
KRHAIYDLDDIYRQYKNKYDAVGIFGSRSPQLLVINPALARRVFVSNFKN
FHDNEIAKNIDEKTDFIFANNPFSLTGEKWKTRRADVTPGLTMGRIKTVY
PVTNKVCQKLTEWVEKQLRLGSKDGIDAKHMSLCFTTEMVTDCVLGLGAE
SFSDKPTPIMSKINDLFNQPWTFVLFFILTSSFPSLSHLIKLRFVPVDVE
RFFVDLMGSAVETRRAQLAAGKQFERSDFLDYILQLGEKRNLDNRQLLAY
SMTFLLDGFETTATVLAHILLNLGRNKEAQNLLREEIRSHLQDGTIAFEK
LSDLPYLDACVQETIRLFPPGFMSNKLCTESIEIPNKEGPNFVVEKGTTV
VVPHYCFMLDEEFFPNPQSFQPERFLEPDAAKTFRERGVFMGFGDGPRVC
IGMRFATVQIKAAIVELISKFNVKINDKTRKDNDYEPGQIITGLRGGIWL
DLEKL*
BS07634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28a5-PA | 505 | CG8864-PA | 1..505 | 1..505 | 2648 | 100 | Plus |
| Cyp28d1-PA | 502 | CG10833-PA | 8..497 | 6..501 | 1244 | 45.3 | Plus |
| Cyp28d2-PA | 501 | CG6081-PA | 8..501 | 6..505 | 1156 | 42.6 | Plus |
| Cyp28c1-PB | 505 | CG1895-PB | 9..494 | 9..500 | 835 | 34.2 | Plus |
| Cyp28c1-PA | 505 | CG1895-PA | 9..494 | 9..500 | 835 | 34.2 | Plus |
