Clone Sequence Records
BS07643.3prime Sequence
896 bp (781 high quality bases) assembled on 2006-01-06
> BS07643.3prime
ATGGTCTAGAAAGCTTTTAAAAGCGGAAGTTAACGAATTTATTGAACTGC
TCCTGGGCACCTTGCAAGGTCATCCTCCTTGTCTCCGGCAGTGTAAGGAC
TCCGAGAATCACTCCCGCCAGGTACATGGCTCCCATGATGTAGAAGTAGT
TGTAGCCTTGTCCAAAATTGAAGTCACAAACATTTATGATGAGGAAGACA
AATATTTCGGTGATGAAAGTTAAACCGATAAAGTGTTGCTTAACTCCCAT
GGGATATGCCTCCGTCAGGTAGGCCGAGTTGGATGAGAAGGCCATACCGG
CAAAGAACTCGAAAATCATTATCAAGACGGTCACTTGGCTCATATACGTA
TATACATTGTACTGTGAACCCACGGCAAACGACAAGCCGCAGCTTACGAG
CAGGCCAAAGACCGCAGGCTTCTTTCGGCCCAAGGACTCCATGCAAAAGG
ATGGGATTAGGGATCCCAACCAACGGCAAAAGGCTAATCCTATGTACCAG
GAGCTCGCATTTCTTAAATCATTGGAGACTAAGATCGCAACGACATAAGT
GATGATCACAAAGCTGGAGATGCTCATAGCATTCAGGGCGCGCAGGTATG
CAAGTCGCATGAAGGTGGGCAGCGCTTTGGAAATGCTTTCACTCTTTGAC
ATATTCTTGTTGTAGGCCAAGTAGCGTTTGTGCTCCGCCAGAAGCTCGTA
AGTTTCCTCGGTTAGCACCGCAGGCTTTTGTAGCCGACGCAGTGCGTCAA
TGGCCGCCTGTTCTTCGTTATTGGCCAGCATTAGAACCGGCGATTCGATG
GTAAAAAATGAGCCCATAATAAGGGCCAAAACGCCGTAGATTGTGCTCAG
CACTCCTTTCATATTCTCGGACGTAAAATCATTGTATGTCATATAC
BS07643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6640-PB | 1557 | CG6640-RB | 678..1557 | 896..17 | 4400 | 100 | Minus |
CG6640-PA | 2751 | CG6640-RA | 1872..2751 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1752 | CG42825-RA | 792..1671 | 896..17 | 4400 | 100 | Minus |
CG32054-RA | 1775 | CG32054-RA | 854..1174 | 868..551 | 290 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10095835..10096714 | 17..896 | 4400 | 100 | Plus |
3L | 28110227 | 3L | 10093369..10093689 | 551..868 | 265 | 72.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:22:28 has no hits.
BS07643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:02 Download gff for
BS07643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PB | 678..1557 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:22 Download gff for
BS07643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PA | 1872..2751 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:09 Download gff for
BS07643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 792..1675 | 11..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:34 Download gff for
BS07643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 792..1675 | 11..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:34 Download gff for
BS07643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10095831..10096714 | 11..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:09 Download gff for
BS07643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10088931..10089814 | 11..896 | 99 | | Plus |
BS07643.5prime Sequence
900 bp (824 high quality bases) assembled on 2006-01-06
> BS07643.5prime
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAGCCTGCGGTGCTAACCGAGGAAACTTACGAGCTTCTG
BS07643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6640-PA | 2751 | CG6640-RA | 1194..2041 | 16..863 | 4240 | 100 | Plus |
CG6640-PB | 1557 | CG6640-RB | 1..847 | 17..863 | 4235 | 100 | Plus |
CG6640-PA | 2751 | CG6640-RA | 2040..2079 | 861..900 | 200 | 100 | Plus |
CG6640-PB | 1557 | CG6640-RB | 846..885 | 861..900 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1752 | CG42825-RA | 114..999 | 16..900 | 4405 | 99.9 | Plus |
CG32054-RA | 1775 | CG32054-RA | 365..985 | 233..850 | 265 | 70.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10096507..10096969 | 900..439 | 2265 | 99.8 | Minus |
3L | 28110227 | 3L | 10097752..10098002 | 266..16 | 1255 | 100 | Minus |
3L | 28110227 | 3L | 10097030..10097205 | 439..264 | 880 | 100 | Minus |
3L | 28110227 | 3L | 10093558..10093689 | 850..722 | 190 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:09:00 has no hits.
BS07643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:03 Download gff for
BS07643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PA | 1194..2079 | 16..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:23 Download gff for
BS07643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PA | 1194..2079 | 16..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:39 Download gff for
BS07643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 114..999 | 16..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:36 Download gff for
BS07643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 114..999 | 16..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:36 Download gff for
BS07643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10096507..10096968 | 440..900 | 99 | <- | Minus |
3L | 10097030..10097202 | 267..439 | 100 | <- | Minus |
3L | 10097752..10098002 | 16..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:39 Download gff for
BS07643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10089607..10090068 | 440..900 | 99 | <- | Minus |
arm_3L | 10090130..10090302 | 267..439 | 100 | <- | Minus |
arm_3L | 10090852..10091102 | 16..266 | 100 | | Minus |
BS07643.complete Sequence
1589 bp (1589 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635931
> BS07643.complete
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAAGCCTGCGGTGCTAACCGAGGAAACTTACGAGCTTCT
GGCGGAGCACAAACGCTACTTGGCCTACAACAAGAATATGTCAAAGAGTG
AAAGCATTTCCAAAGCGCTGCCCACCTTCATGCGACTTGCATACCTGCGC
GCCCTGAATGCTATGAGCATCTCCAGCTTTGTGATCATCACTTATGTCGT
TGCGATCTTAGTCTCCAATGATTTAAGAAATGCGAGCTCCTGGTACATAG
GATTAGCCTTTTGCCGTTGGTTGGGATCCCTAATCCCATCCTTTTGCATG
GAGTCCTTGGGCCGAAAGAAGCCTGCGGTCTTTGGCCTGCTCGTAAGCTG
CGGCTTGTCGTTTGCCGTGGGTTCACAGTACAATGTATATACGTATATGA
GCCAAGTGACCGTCTTGATAATGATTTTCGAGTTCTTTGCCGGTATGGCC
TTCTCATCCAACTCGGCCTACCTGACGGAGGCATATCCCATGGGAGTTAA
GCAACACTTTATCGGTTTAACTTTCATCACCGAAATATTTGTCTTCCTCA
TCATAAATGTTTGTGACTTCAATTTTGGACAAGGCTACAACTACTTCTAC
ATCATGGGAGCCATGTACCTGGCGGGAGTGATTCTCGGAGTCCTTACACT
GCCGGAGACAAGGAGGATGACCTTGCAAGGTGCCCAGGAGCAGTTCAATA
AATTCGTTAACTTCCGCTTTTAAAAGCTTTCTAGACCAT
BS07643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1557 | CG42825-PA | 1..1557 | 17..1573 | 7785 | 100 | Plus |
CG32054-RA | 1692 | CG32054-PA | 346..1155 | 233..1039 | 295 | 69.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1752 | CG42825-RA | 114..1671 | 16..1573 | 7790 | 100 | Plus |
CG32054-RA | 1775 | CG32054-RA | 365..1174 | 233..1039 | 295 | 69.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10095835..10096969 | 1573..439 | 5675 | 100 | Minus |
3L | 28110227 | 3L | 10097752..10098002 | 266..16 | 1255 | 100 | Minus |
3L | 28110227 | 3L | 10097030..10097205 | 439..264 | 880 | 100 | Minus |
3L | 28110227 | 3L | 10093369..10093689 | 1039..722 | 265 | 72.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:14:18 has no hits.
BS07643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:20 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-RA | 1194..2751 | 16..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:20 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-RA | 1194..2755 | 16..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:07 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 115..1669 | 17..1571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:21 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-RB | 79..1640 | 16..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:05 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 115..1669 | 17..1571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:05 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10095837..10096968 | 440..1571 | 100 | <- | Minus |
3L | 10097030..10097202 | 267..439 | 100 | <- | Minus |
3L | 10097752..10098001 | 17..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:07 Download gff for
BS07643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10088937..10090068 | 440..1571 | 100 | <- | Minus |
arm_3L | 10090130..10090302 | 267..439 | 100 | <- | Minus |
arm_3L | 10090852..10091101 | 17..266 | 100 | | Minus |
BS07643.pep Sequence
Translation from 16 to 1572
> BS07643.pep
MQNDKYPAPIGFYPPQGQPGYPQPASQPGYPQPGQPQHITPAETYGPQPP
PMPPRDPHTRVDPPGGCFQRNQKNKPQSNAVGAAGLIFISGGMNIAWAIG
FQGPIYYQTTKHNYIAWFIGAIIGALVTMALTNKVAKKYILQFSSVLVTV
GGLVIACTHNNGAGTTAACYLDGIANGLVFAPFMALVGEISVPYLRGKAS
ATLEQLCFGTGILLQILYVSNWTYSSYMTYNDFTSENMKGVLSTIYGVLA
LIMGSFFTIESPVLMLANNEEQAAIDALRRLQKPAVLTEETYELLAEHKR
YLAYNKNMSKSESISKALPTFMRLAYLRALNAMSISSFVIITYVVAILVS
NDLRNASSWYIGLAFCRWLGSLIPSFCMESLGRKKPAVFGLLVSCGLSFA
VGSQYNVYTYMSQVTVLIMIFEFFAGMAFSSNSAYLTEAYPMGVKQHFIG
LTFITEIFVFLIINVCDFNFGQGYNYFYIMGAMYLAGVILGVLTLPETRR
MTLQGAQEQFNKFVNFRF*
BS07643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-PA | 518 | CG6640-PB | 1..518 | 1..518 | 2711 | 100 | Plus |
CG32054-PA | 563 | CG32054-PA | 1..563 | 1..518 | 1514 | 53.3 | Plus |
CG32053-PA | 496 | CG32053-PA | 45..492 | 67..514 | 783 | 39 | Plus |
CG42826-PA | 473 | CG42826-PA | 8..473 | 53..518 | 699 | 34.4 | Plus |
CG17930-PA | 502 | CG17930-PA | 10..495 | 22..512 | 461 | 29.2 | Plus |