Clone BS07643 Report

Search the DGRC for BS07643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG42825-RA
Protein status:BS07643.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07643.3prime Sequence

896 bp (781 high quality bases) assembled on 2006-01-06

> BS07643.3prime
ATGGTCTAGAAAGCTTTTAAAAGCGGAAGTTAACGAATTTATTGAACTGC
TCCTGGGCACCTTGCAAGGTCATCCTCCTTGTCTCCGGCAGTGTAAGGAC
TCCGAGAATCACTCCCGCCAGGTACATGGCTCCCATGATGTAGAAGTAGT
TGTAGCCTTGTCCAAAATTGAAGTCACAAACATTTATGATGAGGAAGACA
AATATTTCGGTGATGAAAGTTAAACCGATAAAGTGTTGCTTAACTCCCAT
GGGATATGCCTCCGTCAGGTAGGCCGAGTTGGATGAGAAGGCCATACCGG
CAAAGAACTCGAAAATCATTATCAAGACGGTCACTTGGCTCATATACGTA
TATACATTGTACTGTGAACCCACGGCAAACGACAAGCCGCAGCTTACGAG
CAGGCCAAAGACCGCAGGCTTCTTTCGGCCCAAGGACTCCATGCAAAAGG
ATGGGATTAGGGATCCCAACCAACGGCAAAAGGCTAATCCTATGTACCAG
GAGCTCGCATTTCTTAAATCATTGGAGACTAAGATCGCAACGACATAAGT
GATGATCACAAAGCTGGAGATGCTCATAGCATTCAGGGCGCGCAGGTATG
CAAGTCGCATGAAGGTGGGCAGCGCTTTGGAAATGCTTTCACTCTTTGAC
ATATTCTTGTTGTAGGCCAAGTAGCGTTTGTGCTCCGCCAGAAGCTCGTA
AGTTTCCTCGGTTAGCACCGCAGGCTTTTGTAGCCGACGCAGTGCGTCAA
TGGCCGCCTGTTCTTCGTTATTGGCCAGCATTAGAACCGGCGATTCGATG
GTAAAAAATGAGCCCATAATAAGGGCCAAAACGCCGTAGATTGTGCTCAG
CACTCCTTTCATATTCTCGGACGTAAAATCATTGTATGTCATATAC

BS07643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6640-PB 1557 CG6640-RB 678..1557 896..17 4400 100 Minus
CG6640-PA 2751 CG6640-RA 1872..2751 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1752 CG42825-RA 792..1671 896..17 4400 100 Minus
CG32054-RA 1775 CG32054-RA 854..1174 868..551 290 73.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10095835..10096714 17..896 4400 100 Plus
3L 28110227 3L 10093369..10093689 551..868 265 72.9 Plus
Blast to na_te.dros performed on 2015-02-10 17:22:28 has no hits.

BS07643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:02 Download gff for BS07643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PB 678..1557 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:22 Download gff for BS07643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PA 1872..2751 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:09 Download gff for BS07643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 792..1675 11..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:34 Download gff for BS07643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 792..1675 11..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:34 Download gff for BS07643.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10095831..10096714 11..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:09 Download gff for BS07643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10088931..10089814 11..896 99   Plus

BS07643.5prime Sequence

900 bp (824 high quality bases) assembled on 2006-01-06

> BS07643.5prime
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAGCCTGCGGTGCTAACCGAGGAAACTTACGAGCTTCTG

BS07643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6640-PA 2751 CG6640-RA 1194..2041 16..863 4240 100 Plus
CG6640-PB 1557 CG6640-RB 1..847 17..863 4235 100 Plus
CG6640-PA 2751 CG6640-RA 2040..2079 861..900 200 100 Plus
CG6640-PB 1557 CG6640-RB 846..885 861..900 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1752 CG42825-RA 114..999 16..900 4405 99.9 Plus
CG32054-RA 1775 CG32054-RA 365..985 233..850 265 70.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10096507..10096969 900..439 2265 99.8 Minus
3L 28110227 3L 10097752..10098002 266..16 1255 100 Minus
3L 28110227 3L 10097030..10097205 439..264 880 100 Minus
3L 28110227 3L 10093558..10093689 850..722 190 78 Minus
Blast to na_te.dros performed on 2015-02-11 13:09:00 has no hits.

BS07643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:03 Download gff for BS07643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PA 1194..2079 16..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:23 Download gff for BS07643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PA 1194..2079 16..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:39 Download gff for BS07643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 114..999 16..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:36 Download gff for BS07643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 114..999 16..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:36 Download gff for BS07643.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10096507..10096968 440..900 99 <- Minus
3L 10097030..10097202 267..439 100 <- Minus
3L 10097752..10098002 16..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:39 Download gff for BS07643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10089607..10090068 440..900 99 <- Minus
arm_3L 10090130..10090302 267..439 100 <- Minus
arm_3L 10090852..10091102 16..266 100   Minus

BS07643.complete Sequence

1589 bp (1589 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635931

> BS07643.complete
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAAGCCTGCGGTGCTAACCGAGGAAACTTACGAGCTTCT
GGCGGAGCACAAACGCTACTTGGCCTACAACAAGAATATGTCAAAGAGTG
AAAGCATTTCCAAAGCGCTGCCCACCTTCATGCGACTTGCATACCTGCGC
GCCCTGAATGCTATGAGCATCTCCAGCTTTGTGATCATCACTTATGTCGT
TGCGATCTTAGTCTCCAATGATTTAAGAAATGCGAGCTCCTGGTACATAG
GATTAGCCTTTTGCCGTTGGTTGGGATCCCTAATCCCATCCTTTTGCATG
GAGTCCTTGGGCCGAAAGAAGCCTGCGGTCTTTGGCCTGCTCGTAAGCTG
CGGCTTGTCGTTTGCCGTGGGTTCACAGTACAATGTATATACGTATATGA
GCCAAGTGACCGTCTTGATAATGATTTTCGAGTTCTTTGCCGGTATGGCC
TTCTCATCCAACTCGGCCTACCTGACGGAGGCATATCCCATGGGAGTTAA
GCAACACTTTATCGGTTTAACTTTCATCACCGAAATATTTGTCTTCCTCA
TCATAAATGTTTGTGACTTCAATTTTGGACAAGGCTACAACTACTTCTAC
ATCATGGGAGCCATGTACCTGGCGGGAGTGATTCTCGGAGTCCTTACACT
GCCGGAGACAAGGAGGATGACCTTGCAAGGTGCCCAGGAGCAGTTCAATA
AATTCGTTAACTTCCGCTTTTAAAAGCTTTCTAGACCAT

BS07643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1557 CG42825-PA 1..1557 17..1573 7785 100 Plus
CG32054-RA 1692 CG32054-PA 346..1155 233..1039 295 69.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1752 CG42825-RA 114..1671 16..1573 7790 100 Plus
CG32054-RA 1775 CG32054-RA 365..1174 233..1039 295 69.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10095835..10096969 1573..439 5675 100 Minus
3L 28110227 3L 10097752..10098002 266..16 1255 100 Minus
3L 28110227 3L 10097030..10097205 439..264 880 100 Minus
3L 28110227 3L 10093369..10093689 1039..722 265 72.9 Minus
Blast to na_te.dros performed on 2014-11-27 15:14:18 has no hits.

BS07643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:20 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RA 1194..2751 16..1573 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:20 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RA 1194..2755 16..1579 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:07 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 115..1669 17..1571 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:21 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RB 79..1640 16..1579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:05 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 115..1669 17..1571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:05 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10095837..10096968 440..1571 100 <- Minus
3L 10097030..10097202 267..439 100 <- Minus
3L 10097752..10098001 17..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:07 Download gff for BS07643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10088937..10090068 440..1571 100 <- Minus
arm_3L 10090130..10090302 267..439 100 <- Minus
arm_3L 10090852..10091101 17..266 100   Minus

BS07643.pep Sequence

Translation from 16 to 1572

> BS07643.pep
MQNDKYPAPIGFYPPQGQPGYPQPASQPGYPQPGQPQHITPAETYGPQPP
PMPPRDPHTRVDPPGGCFQRNQKNKPQSNAVGAAGLIFISGGMNIAWAIG
FQGPIYYQTTKHNYIAWFIGAIIGALVTMALTNKVAKKYILQFSSVLVTV
GGLVIACTHNNGAGTTAACYLDGIANGLVFAPFMALVGEISVPYLRGKAS
ATLEQLCFGTGILLQILYVSNWTYSSYMTYNDFTSENMKGVLSTIYGVLA
LIMGSFFTIESPVLMLANNEEQAAIDALRRLQKPAVLTEETYELLAEHKR
YLAYNKNMSKSESISKALPTFMRLAYLRALNAMSISSFVIITYVVAILVS
NDLRNASSWYIGLAFCRWLGSLIPSFCMESLGRKKPAVFGLLVSCGLSFA
VGSQYNVYTYMSQVTVLIMIFEFFAGMAFSSNSAYLTEAYPMGVKQHFIG
LTFITEIFVFLIINVCDFNFGQGYNYFYIMGAMYLAGVILGVLTLPETRR
MTLQGAQEQFNKFVNFRF*

BS07643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-PA 518 CG6640-PB 1..518 1..518 2711 100 Plus
CG32054-PA 563 CG32054-PA 1..563 1..518 1514 53.3 Plus
CG32053-PA 496 CG32053-PA 45..492 67..514 783 39 Plus
CG42826-PA 473 CG42826-PA 8..473 53..518 699 34.4 Plus
CG17930-PA 502 CG17930-PA 10..495 22..512 461 29.2 Plus