Clone BS07646 Report

Search the DGRC for BS07646

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptZasp66-RF
Protein status:BS07646.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07646.3prime Sequence

867 bp (865 high quality bases) assembled on 2006-01-06

> BS07646.3prime
ATGGTCTAGAAAGCTTCTAGTACTCGGTGGCACCAATCACGCTGTACATG
AGACGATTGAAGGAGCCGCTCTGGCGTATGTTCTCATCGTGGGTGTTTAC
CACATTGTACGGCGGCCGGGATACTGGCGCTGATACTGGTTTCTTTCCTG
GAACCAATCTATTGGGCTGATAGACCTTAGTCTGCACAGGAATGGTCACT
TCCTGTGGCGAGGATTGGCCATAGTTGCTGTAGCCGCCCTCTTCTTGAAT
GGCTCTGTAGGTTTCGCTGTTCCTGGGATCGTACTGGACAGTTTTCTTAT
AGCCGTTAAGTTTTGTTGGCAAAGGACGATGCAAAGGACTGTCCTTCAAG
CGATTGCTTTCGCTTGTGGCGAAGGGAACTGTGGATCTGATGGTGTCCTC
GATGTTGTTGTTGGAGTACAGGCCAATGGGCGAGTTGAATTGCTTGTGGA
AGACGCGGCCAGTGTCGGCTTCCGAACCGACCACCTTGTGCAGCATGGTG
TCGGCCACGCGCTGCTTCATGATACTGTCATGGTAGTCGTGTCCTGGGTG
GGCGCGCACAGCCGGGTTGGGGTAGTGCCTCAAGTAGGACTCTGTCGTGG
GCGCATCCTTCTTCACTTTGGCGCCGGGCAGGACCAGCGGAGTTGTACGG
TAGGGCTGATTCACAATGGCCGCCTGCTCCTCATCGACGTCTTGTTGATG
GTCCCTGGTTGGCTTGGGTGAGAACACAGTCGATGGCACCTCATAGCCAC
CGGATGAGTTCAGCTGGGGAAACACGGTCTGCGGCAACGTGTCCACCGGC
AACTGGAGGGCCCTCTCAAAGTGGCTGGGTCCGGGCAAAAAGGGCGACGG
ACCGCGGTGGGGCATCA

BS07646.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6416-PE 1293 CG6416-RE 443..1293 867..17 4255 100 Minus
CG6416-PF 1209 CG6416-RF 359..1209 867..17 4255 100 Minus
CG6416-PJ 720 CG6416-RJ 82..720 655..17 3195 100 Minus
CG6416-PA 720 CG6416-RA 82..720 655..17 3195 100 Minus
CG6416-PB 897 CG6416-RB 359..851 867..375 2465 100 Minus
CG6416-PI 648 CG6416-RI 363..648 302..17 1430 100 Minus
CG6416-PI 648 CG6416-RI 82..364 655..373 1415 100 Minus
CG6416-PH 408 CG6416-RH 82..362 655..375 1405 100 Minus
CG6416-PG 498 CG6416-RG 82..362 655..375 1405 100 Minus
CG6416-PB 897 CG6416-RB 852..897 142..97 230 100 Minus
CG6416-PH 408 CG6416-RH 363..408 142..97 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-RF 1714 CG6416-RF 544..1396 867..15 4265 100 Minus
Zasp66-RE 1725 CG6416-RE 555..1407 867..15 4265 100 Minus
Zasp66-RA 1212 CG6416-RA 254..894 655..15 3205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8627519..8627730 867..656 1060 100 Minus
3L 28110227 3L 8634580..8634785 658..453 1030 100 Minus
3L 28110227 3L 8637438..8637598 303..143 805 100 Minus
3L 28110227 3L 8638267..8638355 103..15 445 100 Minus
3L 28110227 3L 8635002..8635081 454..375 400 100 Minus
3L 28110227 3L 8635681..8635763 374..292 370 96.4 Minus
3L 28110227 3L 8638155..8638198 144..101 220 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:55:40 has no hits.

BS07646.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:08 Download gff for BS07646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6416-PF 360..1209 17..866 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:32 Download gff for BS07646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6416-PE 444..1293 17..866 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:59:05 Download gff for BS07646.3prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RE 556..1407 15..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:06 Download gff for BS07646.3prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RE 556..1407 15..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:06 Download gff for BS07646.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8627520..8627730 656..866 100 -> Minus
3L 8634583..8634783 455..655 100 -> Minus
3L 8635002..8635081 375..454 100 -> Minus
3L 8635681..8635752 303..374 100 -> Minus
3L 8637439..8637598 143..302 100 -> Minus
3L 8638157..8638195 104..142 100 -> Minus
3L 8638267..8638355 15..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:59:05 Download gff for BS07646.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8620620..8620830 656..866 100 -> Minus
arm_3L 8627683..8627883 455..655 100 -> Minus
arm_3L 8628102..8628181 375..454 100 -> Minus
arm_3L 8628781..8628852 303..374 100 -> Minus
arm_3L 8630539..8630698 143..302 100 -> Minus
arm_3L 8631257..8631295 104..142 100 -> Minus
arm_3L 8631367..8631455 15..103 100   Minus

BS07646.5prime Sequence

793 bp (792 high quality bases) assembled on 2006-01-06

> BS07646.5prime
GAAGTTATCAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGC
TACTGCGCGATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGC
AACGATCTGGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCC
AGCGCATGGCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGT
ACGACGCACGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGC
GCTGGCAACGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTA
CACGCAGGGTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCA
CTTTGCCGCCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCC
TTTTTGCCCGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGA
CACGTTGCCGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATG
AGGTGCCATCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAA
GACGTCGATGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAAC
TCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAG
AGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGA
CACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCT
GCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTC

BS07646.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6416-PB 897 CG6416-RB 1..777 17..793 3885 100 Plus
CG6416-PF 1209 CG6416-RF 1..777 17..793 3885 100 Plus
CG6416-PE 1293 CG6416-RE 200..861 132..793 3310 100 Plus
CG6416-PJ 720 CG6416-RJ 82..288 587..793 1035 100 Plus
CG6416-PA 720 CG6416-RA 82..288 587..793 1035 100 Plus
CG6416-PG 498 CG6416-RG 82..288 587..793 1035 100 Plus
CG6416-PH 408 CG6416-RH 82..288 587..793 1035 100 Plus
CG6416-PI 648 CG6416-RI 82..288 587..793 1035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-RM 1554 CG6416-RM 186..962 17..793 3885 100 Plus
Zasp66-RK 1642 CG6416-RK 186..962 17..793 3885 100 Plus
Zasp66-RF 1714 CG6416-RF 186..962 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8627424..8627730 280..586 1535 100 Plus
3L 28110227 3L 8634580..8634785 584..789 1030 100 Plus
3L 28110227 3L 8626960..8627110 133..283 755 100 Plus
3L 28110227 3L 8626394..8626512 17..135 595 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:48:09 has no hits.

BS07646.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:09 Download gff for BS07646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6416-PF 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:33 Download gff for BS07646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6416-PF 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:53 Download gff for BS07646.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RF 180..962 7..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:19:21 Download gff for BS07646.5prime
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RF 180..962 7..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:19:21 Download gff for BS07646.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8626388..8626510 7..133 96 -> Plus
3L 8626961..8627109 134..282 100 -> Plus
3L 8627427..8627730 283..586 100 -> Plus
3L 8634583..8634785 587..793 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:53 Download gff for BS07646.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8619488..8619610 7..133 96 -> Plus
arm_3L 8620061..8620209 134..282 100 -> Plus
arm_3L 8620527..8620830 283..586 100 -> Plus
arm_3L 8627683..8627885 587..793 98   Plus

BS07646.complete Sequence

1241 bp (1241 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635932

> BS07646.complete
GAAGTTATCAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGC
TACTGCGCGATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGC
AACGATCTGGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCC
AGCGCATGGCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGT
ACGACGCACGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGC
GCTGGCAACGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTA
CACGCAGGGTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCA
CTTTGCCGCCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCC
TTTTTGCCCGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGA
CACGTTGCCGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATG
AGGTGCCATCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAA
GACGTCGATGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAAC
TCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAG
AGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGA
CACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCT
GCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGC
AATTCAACTCGCCCATTGGCCTGTACTCCAACAACAACATCGAGGACACC
ATCAGATCCACAGTTCCCTTCGCCACAAGCGAAAGCAATCGCTTGAAGGA
CAGTCCTTTGCATCGTCCTTTGCCAACAAAACTTAACGGCTATAAGAAAA
CTGTCCAGTACGATCCCAGGAACAGCGAAACCTACAGAGCCATTCAAGAA
GAGGGCGGCTACAGCAACTATGGCCAATCCTCGCCACAGGAAGTGACCAT
TCCTGTGCAGACTAAGGTCTATCAGCCCAATAGATTGGTTCCAGGAAAGA
AACCAGTATCAGCGCCAGTATCCCGGCCGCCGTACAATGTGGTAAACACC
CACGATGAGAACATACGCCAGAGCGGCTCCTTCAATCGTCTCATGTACAG
CGTGATTGGTGCCACCGAGTACTAGAAGCTTTCTAGACCAT

BS07646.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-RF 1209 CG6416-PF 1..1209 17..1225 6045 100 Plus
Zasp66-RE 1293 CG6416-PE 200..1293 132..1225 5470 100 Plus
Zasp66-RM 969 CG6416-PM 1..923 17..939 4615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-RF 1714 CG6416-RF 186..1396 17..1227 6055 100 Plus
Zasp66-RE 1725 CG6416-RE 312..1407 132..1227 5480 100 Plus
Zasp66-RM 1554 CG6416-RM 186..1108 17..939 4615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8627424..8627730 280..586 1535 100 Plus
3L 28110227 3L 8634580..8634785 584..789 1030 100 Plus
3L 28110227 3L 8637438..8637598 939..1099 805 100 Plus
3L 28110227 3L 8626960..8627110 133..283 755 100 Plus
3L 28110227 3L 8626394..8626512 17..135 595 100 Plus
3L 28110227 3L 8638267..8638355 1139..1227 445 100 Plus
3L 28110227 3L 8635002..8635081 788..867 400 100 Plus
3L 28110227 3L 8635681..8635763 868..950 370 96.4 Plus
3L 28110227 3L 8638155..8638198 1098..1141 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:39:30 has no hits.

BS07646.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:01 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
CG6416-RF 1..1209 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:37 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
CG6416-RF 186..1394 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:32 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RF 186..1394 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:01 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
CG6416-RF 180..1396 7..1227 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:40 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RF 186..1394 17..1225 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:40 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8637439..8637598 940..1099 100 -> Plus
3L 8638157..8638195 1100..1138 100 -> Plus
3L 8638267..8638353 1139..1225 100   Plus
3L 8627427..8627730 283..586 100 -> Plus
3L 8634583..8634783 587..787 100 -> Plus
3L 8635002..8635081 788..867 100 -> Plus
3L 8635681..8635752 868..939 100 -> Plus
3L 8626394..8626510 17..133 100 -> Plus
3L 8626961..8627109 134..282 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:32 Download gff for BS07646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8631367..8631453 1139..1225 100   Plus
arm_3L 8628781..8628852 868..939 100 -> Plus
arm_3L 8630539..8630698 940..1099 100 -> Plus
arm_3L 8631257..8631295 1100..1138 100 -> Plus
arm_3L 8619494..8619610 17..133 100 -> Plus
arm_3L 8620061..8620209 134..282 100 -> Plus
arm_3L 8620527..8620830 283..586 100 -> Plus
arm_3L 8627683..8627883 587..787 100 -> Plus
arm_3L 8628102..8628181 788..867 100 -> Plus

BS07646.pep Sequence

Translation from 16 to 1224

> BS07646.pep
MSPKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGEL
LRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGAT
QEAGPGSRSNSTLPPVTPDLMPHRGPSPFLPGPSHFERALQLPVDTLPQT
VFPQLNSSGGYEVPSTVFSPKPTRDHQQDVDEEQAAIVNQPYRTTPLVLP
GAKVKKDAPTTESYLRHYPNPAVRAHPGHDYHDSIMKQRVADTMLHKVVG
SEADTGRVFHKQFNSPIGLYSNNNIEDTIRSTVPFATSESNRLKDSPLHR
PLPTKLNGYKKTVQYDPRNSETYRAIQEEGGYSNYGQSSPQEVTIPVQTK
VYQPNRLVPGKKPVSAPVSRPPYNVVNTHDENIRQSGSFNRLMYSVIGAT
EY*

BS07646.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-PF 402 CG6416-PF 1..402 1..402 2124 100 Plus
Zasp66-PK 378 CG6416-PK 1..378 1..402 1963 94 Plus
Zasp66-PE 430 CG6416-PE 68..430 40..402 1920 100 Plus
Zasp66-PN 406 CG6416-PN 68..406 40..402 1759 93.4 Plus
Zasp66-PM 322 CG6416-PM 1..320 1..320 1635 97.2 Plus