Clone BS07648 Report

Search the DGRC for BS07648

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG11791-RA
Protein status:BS07648.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07648.5prime Sequence

576 bp (575 high quality bases) assembled on 2006-01-06

> BS07648.5prime
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACTAAAAGCTTTCTAGACC

BS07648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 546 CG11791-RA 1..546 17..562 2730 100 Plus
CG11791-PB 396 CG11791-RB 1..396 167..562 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 1906 CG11791-RA 922..1467 17..562 2730 100 Plus
CG11791-RB 1299 CG11791-RB 331..860 33..562 2650 100 Plus
CG11791-RD 1721 CG11791-RD 754..1282 34..562 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25051164..25051557 17..410 1970 100 Plus
3R 32079331 3R 25052482..25052635 409..562 770 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:47:54 has no hits.

BS07648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:14 Download gff for BS07648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:39 Download gff for BS07648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:37 Download gff for BS07648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:34 Download gff for BS07648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:34 Download gff for BS07648.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25052483..25052638 410..568 98   Plus
3R 25051164..25051556 17..409 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:37 Download gff for BS07648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20876886..20877278 17..409 100 -> Plus
arm_3R 20878205..20878360 410..568 98   Plus

BS07648.3prime Sequence

576 bp (575 high quality bases) assembled on 2006-01-06

> BS07648.3prime
ATGGTCTAGAAAGCTTTTAGTAAACGTATATTGTTTTTAGTTGCGGCTTC
AATTCTGGAGGTATCACTGGAGTGTGTTCCACTTTTCGAGTAACTAGGCG
CTTGAACCGTCCACTGAATTGCTTGCGAAATCCCTTAAAGCTGCTCTTAT
CACTTGAGGCCATCATGTCCGGACTCAGGCAATTGTAGATGTGCGGTGTG
GGCGCCTTTGGGGGGAATGTCCACTCCGTTTGGATGGAGCACCCATTCCC
GTTCCCGTTGGCGTCGCAAACAGCTGGTGCATTACTGGTCCTCACGAACG
TAACGCTCTGGGTTTGTTTGGCAGGTGCTGAAGATGACGATGGTGTGGTG
GATGCGGATGCGGCAGCGGATGGGGCCTTGGCCCTGGTTTTGCCCTCGCT
CGATTCCTTCATTCTTATGTGGTCGTCCCAGTAGCGTGTAAATATGTTTT
TGGTGTGCTGGACGTCGGTGGACGATGGATGGTGCTGGTGCGGATGCGGG
GTGTTCAGATAGTCGGTTACAGAAACATCACGTTGACAACATTTACTGCG
GACAAGACGCATGTCGACTGATAACT

BS07648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 546 CG11791-RA 1..546 562..17 2730 100 Minus
CG11791-PB 396 CG11791-RB 1..396 412..17 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 1906 CG11791-RA 922..1467 562..17 2730 100 Minus
CG11791-RB 1299 CG11791-RB 331..860 546..17 2650 100 Minus
CG11791-RD 1721 CG11791-RD 754..1282 545..17 2645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25051164..25051557 562..169 1970 100 Minus
3R 32079331 3R 25052482..25052635 170..17 770 100 Minus
Blast to na_te.dros performed on 2015-02-06 11:44:44 has no hits.

BS07648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:13 Download gff for BS07648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:37 Download gff for BS07648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:01 Download gff for BS07648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 11..562 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:04 Download gff for BS07648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1470 11..562 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:04 Download gff for BS07648.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25051164..25051556 170..562 100 -> Minus
3R 25052483..25052638 11..169 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:01 Download gff for BS07648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20876886..20877278 170..562 100 -> Minus
arm_3R 20878205..20878360 11..169 98   Minus

BS07648.complete Sequence

578 bp (578 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635933

> BS07648.complete
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACTAAAAGCTTTCTAGACCAT

BS07648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 546 CG11791-PA 1..546 17..562 2730 100 Plus
CG11791-RD 396 CG11791-PD 1..396 167..562 1980 100 Plus
CG11791-RC 396 CG11791-PC 1..396 167..562 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 1906 CG11791-RA 922..1467 17..562 2730 100 Plus
CG11791-RB 1299 CG11791-RB 331..860 33..562 2650 100 Plus
CG11791-RD 1721 CG11791-RD 754..1282 34..562 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25051164..25051557 17..410 1970 100 Plus
3R 32079331 3R 25052482..25052635 409..562 770 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:17:34 has no hits.

BS07648.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:02 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:40 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 829..1377 17..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:17 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1465 17..560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:02 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 829..1377 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:46 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 922..1465 17..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:46 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25051164..25051556 17..409 100 -> Plus
3R 25052483..25052633 410..560 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:17 Download gff for BS07648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20878205..20878355 410..560 100   Plus
arm_3R 20876886..20877278 17..409 100 -> Plus

BS07648.pep Sequence

Translation from 16 to 561

> BS07648.pep
MRLVRSKCCQRDVSVTDYLNTPHPHQHHPSSTDVQHTKNIFTRYWDDHIR
MKESSEGKTRAKAPSAAASASTTPSSSSAPAKQTQSVTFVRTSNAPAVCD
ANGNGNGCSIQTEWTFPPKAPTPHIYNCLSPDMMASSDKSSFKGFRKQFS
GRFKRLVTRKVEHTPVIPPELKPQLKTIYVY*

BS07648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 181 CG11791-PA 1..181 1..181 973 100 Plus
CG11791-PD 131 CG11791-PD 1..131 51..181 685 100 Plus
CG11791-PC 131 CG11791-PC 1..131 51..181 685 100 Plus
CG11791-PB 131 CG11791-PB 1..131 51..181 685 100 Plus