Clone Sequence Records
BS07648.5prime Sequence
576 bp (575 high quality bases) assembled on 2006-01-06
> BS07648.5prime
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACTAAAAGCTTTCTAGACC
BS07648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-PA | 546 | CG11791-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG11791-PB | 396 | CG11791-RB | 1..396 | 167..562 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 1906 | CG11791-RA | 922..1467 | 17..562 | 2730 | 100 | Plus |
CG11791-RB | 1299 | CG11791-RB | 331..860 | 33..562 | 2650 | 100 | Plus |
CG11791-RD | 1721 | CG11791-RD | 754..1282 | 34..562 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25051164..25051557 | 17..410 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 25052482..25052635 | 409..562 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:47:54 has no hits.
BS07648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:14 Download gff for
BS07648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:39 Download gff for
BS07648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:37 Download gff for
BS07648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:34 Download gff for
BS07648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 17..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:34 Download gff for
BS07648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25052483..25052638 | 410..568 | 98 | | Plus |
3R | 25051164..25051556 | 17..409 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:37 Download gff for
BS07648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20876886..20877278 | 17..409 | 100 | -> | Plus |
arm_3R | 20878205..20878360 | 410..568 | 98 | | Plus |
BS07648.3prime Sequence
576 bp (575 high quality bases) assembled on 2006-01-06
> BS07648.3prime
ATGGTCTAGAAAGCTTTTAGTAAACGTATATTGTTTTTAGTTGCGGCTTC
AATTCTGGAGGTATCACTGGAGTGTGTTCCACTTTTCGAGTAACTAGGCG
CTTGAACCGTCCACTGAATTGCTTGCGAAATCCCTTAAAGCTGCTCTTAT
CACTTGAGGCCATCATGTCCGGACTCAGGCAATTGTAGATGTGCGGTGTG
GGCGCCTTTGGGGGGAATGTCCACTCCGTTTGGATGGAGCACCCATTCCC
GTTCCCGTTGGCGTCGCAAACAGCTGGTGCATTACTGGTCCTCACGAACG
TAACGCTCTGGGTTTGTTTGGCAGGTGCTGAAGATGACGATGGTGTGGTG
GATGCGGATGCGGCAGCGGATGGGGCCTTGGCCCTGGTTTTGCCCTCGCT
CGATTCCTTCATTCTTATGTGGTCGTCCCAGTAGCGTGTAAATATGTTTT
TGGTGTGCTGGACGTCGGTGGACGATGGATGGTGCTGGTGCGGATGCGGG
GTGTTCAGATAGTCGGTTACAGAAACATCACGTTGACAACATTTACTGCG
GACAAGACGCATGTCGACTGATAACT
BS07648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-PA | 546 | CG11791-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
CG11791-PB | 396 | CG11791-RB | 1..396 | 412..17 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 1906 | CG11791-RA | 922..1467 | 562..17 | 2730 | 100 | Minus |
CG11791-RB | 1299 | CG11791-RB | 331..860 | 546..17 | 2650 | 100 | Minus |
CG11791-RD | 1721 | CG11791-RD | 754..1282 | 545..17 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25051164..25051557 | 562..169 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 25052482..25052635 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:44:44 has no hits.
BS07648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:13 Download gff for
BS07648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:37 Download gff for
BS07648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:01 Download gff for
BS07648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 11..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:04 Download gff for
BS07648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1470 | 11..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:04 Download gff for
BS07648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25051164..25051556 | 170..562 | 100 | -> | Minus |
3R | 25052483..25052638 | 11..169 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:01 Download gff for
BS07648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20876886..20877278 | 170..562 | 100 | -> | Minus |
arm_3R | 20878205..20878360 | 11..169 | 98 | | Minus |
BS07648.complete Sequence
578 bp (578 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635933
> BS07648.complete
GAAGTTATCAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTG
ATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCAT
CCATCGTCCACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTG
GGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCA
AGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCA
GCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGC
ACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAA
CGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGC
CTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATT
TCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGG
AACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATA
TACGTTTACTAAAAGCTTTCTAGACCAT
BS07648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 546 | CG11791-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG11791-RD | 396 | CG11791-PD | 1..396 | 167..562 | 1980 | 100 | Plus |
CG11791-RC | 396 | CG11791-PC | 1..396 | 167..562 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-RA | 1906 | CG11791-RA | 922..1467 | 17..562 | 2730 | 100 | Plus |
CG11791-RB | 1299 | CG11791-RB | 331..860 | 33..562 | 2650 | 100 | Plus |
CG11791-RD | 1721 | CG11791-RD | 754..1282 | 34..562 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25051164..25051557 | 17..410 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 25052482..25052635 | 409..562 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:17:34 has no hits.
BS07648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:02 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:40 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 829..1377 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:17 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1465 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:02 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 829..1377 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:46 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11791-RA | 922..1465 | 17..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:46 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25051164..25051556 | 17..409 | 100 | -> | Plus |
3R | 25052483..25052633 | 410..560 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:17 Download gff for
BS07648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20878205..20878355 | 410..560 | 100 | | Plus |
arm_3R | 20876886..20877278 | 17..409 | 100 | -> | Plus |
BS07648.pep Sequence
Translation from 16 to 561
> BS07648.pep
MRLVRSKCCQRDVSVTDYLNTPHPHQHHPSSTDVQHTKNIFTRYWDDHIR
MKESSEGKTRAKAPSAAASASTTPSSSSAPAKQTQSVTFVRTSNAPAVCD
ANGNGNGCSIQTEWTFPPKAPTPHIYNCLSPDMMASSDKSSFKGFRKQFS
GRFKRLVTRKVEHTPVIPPELKPQLKTIYVY*
BS07648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11791-PA | 181 | CG11791-PA | 1..181 | 1..181 | 973 | 100 | Plus |
CG11791-PD | 131 | CG11791-PD | 1..131 | 51..181 | 685 | 100 | Plus |
CG11791-PC | 131 | CG11791-PC | 1..131 | 51..181 | 685 | 100 | Plus |
CG11791-PB | 131 | CG11791-PB | 1..131 | 51..181 | 685 | 100 | Plus |