Clone Sequence Records
BS07649.3prime Sequence
865 bp (836 high quality bases) assembled on 2006-01-06
> BS07649.3prime
ATGGTCTAGAAAGCTTTTACACCTCGGTGCTGTGCGTCTGAATTCGGACC
TTCTTCACGCTTCCATTGCGCCGCATAGGTGGCGAGCTTCCGGATCCAGA
ATAGCCGGGATTTTGAATGCCTAACGTTGGATCCGGCCGTGGTCTCGGCT
TCTTCAGACTCGATCGCAGCGGTGAACGAGTCACCGAGTCAAGGGTGGAT
CCATTGGACACGCTGGTCACGGTGGTGCTCATGGAGGCCACGCTGCCCGC
CGTTCCCGCTCCATTCCGGATTCCGCTGTAGGGCTTACCGGATGCGTCCG
TCACCGAAACGCCGTTGCGACTGCGAGGCTCCTTGAAACCAGGATTATTG
AACGTAGTGGCACTGCCCGGAGATGACACATCCAGCGCCATTGTGGGATC
TCCGCCTGGACTGCGCGAGTAGATCACATCGTACAGGGCGGCCACGAACA
GAGCAATTGTCAAAACAATAGCCACAATCTGTATATAGAAGGAAATGCCC
CGCGATATCTTGAAGCCATAGCGCTCCTGCTCATCAATTTGCAGAGCAAA
CAAAACCGTCGCTATGATGGCCAGTACACCTCCCAGCAATGCCAACATTA
ACTTCACTATCACTAGAGTTGTGTAGGGCATAACCACCTTCTCCCTGGAT
GAGATCATCGCGTGTTGAATGACCGACAGAATGCAGAAGATGCCCAGCAC
AGCTGAGCTGCCAATGGCCAAGAGTCCACTGACAAAAACCGCATTACTTA
ATCTAAACTTGGACACGTCGTTGCCGCATTTCTCGCGATTATAAGTCAAT
TGCTTGCAGACCTTAAACGGTCCGAAATAACCTCGATCGAAGTCATAGCC
GCCCGATGGACTATC
BS07649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-PB | 951 | CG13698-RB | 103..951 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 1617 | CG13698-RC | 720..1568 | 865..17 | 4245 | 100 | Minus |
CG13698-RB | 2418 | CG13698-RB | 806..1654 | 865..17 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18089181..18089646 | 17..482 | 2330 | 100 | Plus |
3L | 28110227 | 3L | 18090009..18090176 | 577..744 | 840 | 100 | Plus |
3L | 28110227 | 3L | 18090279..18090387 | 745..853 | 545 | 100 | Plus |
3L | 28110227 | 3L | 18089846..18089948 | 479..581 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 15:03:46 has no hits.
BS07649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:15 Download gff for
BS07649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 103..951 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:41 Download gff for
BS07649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 103..951 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:01 Download gff for
BS07649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 806..1668 | 2..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:20 Download gff for
BS07649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 806..1668 | 2..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:20 Download gff for
BS07649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18089167..18089642 | 2..478 | 98 | <- | Plus |
3L | 18089846..18089946 | 479..579 | 100 | <- | Plus |
3L | 18090012..18090176 | 580..744 | 100 | <- | Plus |
3L | 18090279..18090386 | 745..852 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:01 Download gff for
BS07649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18082267..18082742 | 2..478 | 98 | <- | Plus |
arm_3L | 18082946..18083046 | 479..579 | 100 | <- | Plus |
arm_3L | 18083112..18083276 | 580..744 | 100 | <- | Plus |
arm_3L | 18083379..18083486 | 745..852 | 100 | <- | Plus |
BS07649.5prime Sequence
834 bp (829 high quality bases) assembled on 2006-01-06
> BS07649.5prime
GAAGTTATCAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGA
CCTGTCTGGGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATA
CCCATTTGGGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCG
AGGTTATTTCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCG
AGAAATGCGGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTT
GTCAGTGGACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTG
CATTCTGTCGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGG
TTATGCCCTACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTG
GGAGGTGTACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGA
TGAGCAGGAGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATA
TACAGATTGTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTG
TACGATGTGATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCT
GGATGTGTCATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCA
AGGAGCCTCGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAG
CCCTACAGCGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTC
CATGAGCACCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGG
TGACTCGTTCACCGCTGCGATCGAGTCTGAAGAA
BS07649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-PB | 951 | CG13698-RB | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 1617 | CG13698-RC | 616..1435 | 15..834 | 4100 | 100 | Plus |
CG13698-RB | 2418 | CG13698-RB | 702..1521 | 15..834 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18089314..18089646 | 834..502 | 1665 | 100 | Minus |
3L | 28110227 | 3L | 18090009..18090176 | 407..240 | 840 | 100 | Minus |
3L | 28110227 | 3L | 18090447..18090564 | 132..15 | 590 | 100 | Minus |
3L | 28110227 | 3L | 18090279..18090387 | 239..131 | 545 | 100 | Minus |
3L | 28110227 | 3L | 18089846..18089948 | 505..403 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:52:43 has no hits.
BS07649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:16 Download gff for
BS07649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:42 Download gff for
BS07649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:17 Download gff for
BS07649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 693..1521 | 6..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:05 Download gff for
BS07649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 693..1521 | 6..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:05 Download gff for
BS07649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18089314..18089642 | 506..834 | 100 | <- | Minus |
3L | 18089846..18089946 | 405..505 | 100 | <- | Minus |
3L | 18090012..18090176 | 240..404 | 100 | <- | Minus |
3L | 18090279..18090386 | 132..239 | 100 | <- | Minus |
3L | 18090448..18090573 | 6..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:17 Download gff for
BS07649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18083379..18083486 | 132..239 | 100 | <- | Minus |
arm_3L | 18083548..18083673 | 6..131 | 96 | | Minus |
arm_3L | 18082414..18082742 | 506..834 | 100 | <- | Minus |
arm_3L | 18082946..18083046 | 405..505 | 100 | <- | Minus |
arm_3L | 18083112..18083276 | 240..404 | 100 | <- | Minus |
BS07649.complete Sequence
983 bp (983 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635934
> BS07649.complete
GAAGTTATCAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGA
CCTGTCTGGGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATA
CCCATTTGGGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCG
AGGTTATTTCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCG
AGAAATGCGGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTT
GTCAGTGGACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTG
CATTCTGTCGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGG
TTATGCCCTACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTG
GGAGGTGTACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGA
TGAGCAGGAGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATA
TACAGATTGTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTG
TACGATGTGATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCT
GGATGTGTCATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCA
AGGAGCCTCGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAG
CCCTACAGCGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTC
CATGAGCACCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGG
TGACTCGTTCACCGCTGCGATCGAGTCTGAAGAAGCCGAGACCACGGCCG
GATCCAACGTTAGGCATTCAAAATCCCGGCTATTCTGGATCCGGAAGCTC
GCCACCTATGCGGCGCAATGGAAGCGTGAAGAAGGTCCGAATTCAGACGC
ACAGCACCGAGGTGTAAAAGCTTTCTAGACCAT
BS07649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 951 | CG13698-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
CG13698-RB | 951 | CG13698-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 1617 | CG13698-RC | 616..1568 | 15..967 | 4765 | 100 | Plus |
CG13698-RB | 2418 | CG13698-RB | 702..1654 | 15..967 | 4765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18089181..18089646 | 967..502 | 2330 | 100 | Minus |
3L | 28110227 | 3L | 18090009..18090176 | 407..240 | 840 | 100 | Minus |
3L | 28110227 | 3L | 18090447..18090564 | 132..15 | 590 | 100 | Minus |
3L | 28110227 | 3L | 18090279..18090387 | 239..131 | 545 | 100 | Minus |
3L | 28110227 | 3L | 18089846..18089948 | 505..403 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:46:38 has no hits.
BS07649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:23 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:23 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 674..1649 | 6..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:10 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 704..1652 | 17..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:23 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 674..1649 | 6..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:40 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 704..1652 | 17..965 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:40 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18090279..18090386 | 132..239 | 100 | <- | Minus |
3L | 18090448..18090562 | 17..131 | 100 | | Minus |
3L | 18089183..18089642 | 506..965 | 100 | <- | Minus |
3L | 18089846..18089946 | 405..505 | 100 | <- | Minus |
3L | 18090012..18090176 | 240..404 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:10 Download gff for
BS07649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18082283..18082742 | 506..965 | 100 | <- | Minus |
arm_3L | 18082946..18083046 | 405..505 | 100 | <- | Minus |
arm_3L | 18083112..18083276 | 240..404 | 100 | <- | Minus |
arm_3L | 18083379..18083486 | 132..239 | 100 | <- | Minus |
arm_3L | 18083548..18083662 | 17..131 | 100 | | Minus |
BS07649.pep Sequence
Translation from 16 to 966
> BS07649.pep
MAKSTLYAAGVTCLGFICFALASVAIGIPIWGYYDSPSGGYDFDRGYFGP
FKVCKQLTYNREKCGNDVSKFRLSNAVFVSGLLAIGSSAVLGIFCILSVI
QHAMISSREKVVMPYTTLVIVKLMLALLGGVLAIIATVLFALQIDEQERY
GFKISRGISFYIQIVAIVLTIALFVAALYDVIYSRSPGGDPTMALDVSSP
GSATTFNNPGFKEPRSRNGVSVTDASGKPYSGIRNGAGTAGSVASMSTTV
TSVSNGSTLDSVTRSPLRSSLKKPRPRPDPTLGIQNPGYSGSGSSPPMRR
NGSVKKVRIQTHSTEV*
BS07649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-PC | 316 | CG13698-PC | 1..316 | 1..316 | 1602 | 100 | Plus |
CG13698-PB | 316 | CG13698-PB | 1..316 | 1..316 | 1602 | 100 | Plus |