Clone BS07650 Report

Search the DGRC for BS07650

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG9427-RA
Protein status:BS07650.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07650.3prime Sequence

672 bp (671 high quality bases) assembled on 2006-01-06

> BS07650.3prime
ATGGTCTAGAAAGCTTCTACTGGCAGATTGTGCTGCTGCTGGGCAGCAAG
TTTTGTTGACGCAACATATAACAAACCGTGCCGCGGAAATCGCGCAGCGA
ATGGTCCTGCAGCTGCTGATCGAAGACGCCATTGTAGACGATGGTGGGAA
TGAAGCTCGGGCTGTACTGTTTGGTCACCAGCTCCGCCTGCAGCTGCAAT
TTGGTGCCCGTCTCGCTGGACAGGCAGTGGACCACATCGGTGAGCAGGCC
TGCCTCATTGGCACACTGATCAATGCGGGAATAATCCGGAGCTAGCATCT
GGCACACCACGAATTTAACCTGCGCCGCCTGGTTTGCGGTGCTGTTGATG
ACGCAACTCTGGAGGCGATTGCCCTTGCACTCAGCCGGTCCGTGCTGGCA
GTGGAAGATGGCACCATTGCGCTCCGACTGCGATTTTCCGAAGGGCACTA
AGAGTATATCAATGTAGTCCCCGAACTCCTCGTAAACGGGTCCTAGCTGA
TGCATGAAGTTCCTGCTGTCCGGGCACAAGGACTCGTAAAGGAGGGTGAT
GTGCAGCTTGTTGGACTGGCGCTTCTCCCGTGGCTTCTCCTCGAGCTTCG
CCCATCCGAGGGACAGAACGAGAAGCAGAAGGCTTGCGGTGGACGCCAAC
TTCGTCATGTCGACTGATAACT

BS07650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-PA 642 CG9427-RA 1..642 658..17 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-RA 847 CG9427-RA 141..783 658..16 3215 100 Minus
CG9427-RB 719 CG9427-RB 113..655 558..16 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9625669..9625961 266..558 1465 100 Plus
3R 32079331 3R 9625425..9625567 126..268 715 100 Plus
3R 32079331 3R 9625221..9625332 16..127 560 100 Plus
3R 32079331 3R 9626235..9626336 557..658 510 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:01:25 has no hits.

BS07650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:17 Download gff for BS07650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:44 Download gff for BS07650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:37 Download gff for BS07650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 134..794 7..667 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:38 Download gff for BS07650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 134..794 7..667 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:38 Download gff for BS07650.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9625210..9625332 7..127 96 <- Plus
3R 9625427..9625564 128..265 100 <- Plus
3R 9625669..9625959 266..556 100 <- Plus
3R 9626235..9626343 557..667 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:37 Download gff for BS07650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5450932..5451054 7..127 96 <- Plus
arm_3R 5451149..5451286 128..265 100 <- Plus
arm_3R 5451391..5451681 266..556 100 <- Plus
arm_3R 5451957..5452065 557..667 96   Plus

BS07650.5prime Sequence

672 bp (671 high quality bases) assembled on 2006-01-06

> BS07650.5prime
GAAGTTATCAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGC
TTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAG
AAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTG
CCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGT
TCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCG
GAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAA
GGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGG
CGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGC
ATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTG
CCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGA
CCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTC
TTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGT
TTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCT
GCCAGTAGAAGCTTTCTAGACC

BS07650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-PA 642 CG9427-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-RA 847 CG9427-RA 141..783 17..659 3215 100 Plus
CG9427-RB 719 CG9427-RB 113..655 117..659 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9625669..9625961 409..117 1465 100 Minus
3R 32079331 3R 9625425..9625567 549..407 715 100 Minus
3R 32079331 3R 9625221..9625332 659..548 560 100 Minus
3R 32079331 3R 9626235..9626336 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:27:43 has no hits.

BS07650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:19 Download gff for BS07650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:45 Download gff for BS07650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:16 Download gff for BS07650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 134..794 8..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:10 Download gff for BS07650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 134..794 8..668 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:10 Download gff for BS07650.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9625210..9625332 548..668 96 <- Minus
3R 9625427..9625564 410..547 100 <- Minus
3R 9625669..9625959 119..409 100 <- Minus
3R 9626235..9626343 8..118 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:16 Download gff for BS07650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5450932..5451054 548..668 96 <- Minus
arm_3R 5451149..5451286 410..547 100 <- Minus
arm_3R 5451391..5451681 119..409 100 <- Minus
arm_3R 5451957..5452065 8..118 96   Minus

BS07650.complete Sequence

674 bp (674 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635935

> BS07650.complete
GAAGTTATCAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGC
TTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAG
AAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTG
CCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGT
TCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCG
GAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAA
GGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGG
CGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGC
ATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTG
CCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGA
CCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTC
TTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGT
TTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCT
GCCAGTAGAAGCTTTCTAGACCAT

BS07650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-RA 642 CG9427-PA 1..642 17..658 3210 100 Plus
CG9427-RB 639 CG9427-PB 98..639 117..658 2710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-RA 847 CG9427-RA 141..783 17..659 3215 100 Plus
CG9427-RB 719 CG9427-RB 113..655 117..659 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9625669..9625961 409..117 1465 100 Minus
3R 32079331 3R 9625425..9625567 549..407 715 100 Minus
3R 32079331 3R 9625221..9625332 659..548 560 100 Minus
3R 32079331 3R 9626235..9626336 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:33:33 has no hits.

BS07650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:54 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:09 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 123..783 8..668 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:52 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 141..782 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:54 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 123..783 8..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:14 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 141..782 17..658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:14 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9625222..9625332 548..658 100 <- Minus
3R 9625427..9625564 410..547 100 <- Minus
3R 9625669..9625959 119..409 100 <- Minus
3R 9626235..9626336 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:52 Download gff for BS07650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5450944..5451054 548..658 100 <- Minus
arm_3R 5451149..5451286 410..547 100 <- Minus
arm_3R 5451391..5451681 119..409 100 <- Minus
arm_3R 5451957..5452058 17..118 100   Minus

BS07650.pep Sequence

Translation from 16 to 657

> BS07650.pep
MTKLASTASLLLLVLSLGWAKLEEKPREKRQSNKLHITLLYESLCPDSRN
FMHQLGPVYEEFGDYIDILLVPFGKSQSERNGAIFHCQHGPAECKGNRLQ
SCVINSTANQAAQVKFVVCQMLAPDYSRIDQCANEAGLLTDVVHCLSSET
GTKLQLQAELVTKQYSPSFIPTIVYNGVFDQQLQDHSLRDFRGTVCYMLR
QQNLLPSSSTICQ*

BS07650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-PA 213 CG9427-PA 1..213 1..213 1113 100 Plus
CG9427-PB 212 CG9427-PB 22..212 23..213 956 95.3 Plus
GILT1-PA 250 CG9796-PA 24..208 34..196 212 33.5 Plus
CG41378-PD 205 CG41378-PD 1..190 13..196 195 30.1 Plus
CG41378-PC 196 CG41378-PC 13..181 34..196 194 31.4 Plus