Clone Sequence Records
BS07650.3prime Sequence
672 bp (671 high quality bases) assembled on 2006-01-06
> BS07650.3prime
ATGGTCTAGAAAGCTTCTACTGGCAGATTGTGCTGCTGCTGGGCAGCAAG
TTTTGTTGACGCAACATATAACAAACCGTGCCGCGGAAATCGCGCAGCGA
ATGGTCCTGCAGCTGCTGATCGAAGACGCCATTGTAGACGATGGTGGGAA
TGAAGCTCGGGCTGTACTGTTTGGTCACCAGCTCCGCCTGCAGCTGCAAT
TTGGTGCCCGTCTCGCTGGACAGGCAGTGGACCACATCGGTGAGCAGGCC
TGCCTCATTGGCACACTGATCAATGCGGGAATAATCCGGAGCTAGCATCT
GGCACACCACGAATTTAACCTGCGCCGCCTGGTTTGCGGTGCTGTTGATG
ACGCAACTCTGGAGGCGATTGCCCTTGCACTCAGCCGGTCCGTGCTGGCA
GTGGAAGATGGCACCATTGCGCTCCGACTGCGATTTTCCGAAGGGCACTA
AGAGTATATCAATGTAGTCCCCGAACTCCTCGTAAACGGGTCCTAGCTGA
TGCATGAAGTTCCTGCTGTCCGGGCACAAGGACTCGTAAAGGAGGGTGAT
GTGCAGCTTGTTGGACTGGCGCTTCTCCCGTGGCTTCTCCTCGAGCTTCG
CCCATCCGAGGGACAGAACGAGAAGCAGAAGGCTTGCGGTGGACGCCAAC
TTCGTCATGTCGACTGATAACT
BS07650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-PA | 642 | CG9427-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 847 | CG9427-RA | 141..783 | 658..16 | 3215 | 100 | Minus |
CG9427-RB | 719 | CG9427-RB | 113..655 | 558..16 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9625669..9625961 | 266..558 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 9625425..9625567 | 126..268 | 715 | 100 | Plus |
3R | 32079331 | 3R | 9625221..9625332 | 16..127 | 560 | 100 | Plus |
3R | 32079331 | 3R | 9626235..9626336 | 557..658 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:01:25 has no hits.
BS07650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:17 Download gff for
BS07650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:44 Download gff for
BS07650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:37 Download gff for
BS07650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..794 | 7..667 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:38 Download gff for
BS07650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..794 | 7..667 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:38 Download gff for
BS07650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9625210..9625332 | 7..127 | 96 | <- | Plus |
3R | 9625427..9625564 | 128..265 | 100 | <- | Plus |
3R | 9625669..9625959 | 266..556 | 100 | <- | Plus |
3R | 9626235..9626343 | 557..667 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:37 Download gff for
BS07650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5450932..5451054 | 7..127 | 96 | <- | Plus |
arm_3R | 5451149..5451286 | 128..265 | 100 | <- | Plus |
arm_3R | 5451391..5451681 | 266..556 | 100 | <- | Plus |
arm_3R | 5451957..5452065 | 557..667 | 96 | | Plus |
BS07650.5prime Sequence
672 bp (671 high quality bases) assembled on 2006-01-06
> BS07650.5prime
GAAGTTATCAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGC
TTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAG
AAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTG
CCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGT
TCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCG
GAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAA
GGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGG
CGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGC
ATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTG
CCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGA
CCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTC
TTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGT
TTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCT
GCCAGTAGAAGCTTTCTAGACC
BS07650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-PA | 642 | CG9427-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 847 | CG9427-RA | 141..783 | 17..659 | 3215 | 100 | Plus |
CG9427-RB | 719 | CG9427-RB | 113..655 | 117..659 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9625669..9625961 | 409..117 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 9625425..9625567 | 549..407 | 715 | 100 | Minus |
3R | 32079331 | 3R | 9625221..9625332 | 659..548 | 560 | 100 | Minus |
3R | 32079331 | 3R | 9626235..9626336 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:27:43 has no hits.
BS07650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:19 Download gff for
BS07650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:45 Download gff for
BS07650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:16 Download gff for
BS07650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..794 | 8..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:10 Download gff for
BS07650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..794 | 8..668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:10 Download gff for
BS07650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9625210..9625332 | 548..668 | 96 | <- | Minus |
3R | 9625427..9625564 | 410..547 | 100 | <- | Minus |
3R | 9625669..9625959 | 119..409 | 100 | <- | Minus |
3R | 9626235..9626343 | 8..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:16 Download gff for
BS07650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5450932..5451054 | 548..668 | 96 | <- | Minus |
arm_3R | 5451149..5451286 | 410..547 | 100 | <- | Minus |
arm_3R | 5451391..5451681 | 119..409 | 100 | <- | Minus |
arm_3R | 5451957..5452065 | 8..118 | 96 | | Minus |
BS07650.complete Sequence
674 bp (674 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635935
> BS07650.complete
GAAGTTATCAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGC
TTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAG
AAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTG
CCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGT
TCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCG
GAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAA
GGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGG
CGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGC
ATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTG
CCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGA
CCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTC
TTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGT
TTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCT
GCCAGTAGAAGCTTTCTAGACCAT
BS07650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 642 | CG9427-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG9427-RB | 639 | CG9427-PB | 98..639 | 117..658 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 847 | CG9427-RA | 141..783 | 17..659 | 3215 | 100 | Plus |
CG9427-RB | 719 | CG9427-RB | 113..655 | 117..659 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9625669..9625961 | 409..117 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 9625425..9625567 | 549..407 | 715 | 100 | Minus |
3R | 32079331 | 3R | 9625221..9625332 | 659..548 | 560 | 100 | Minus |
3R | 32079331 | 3R | 9626235..9626336 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:33:33 has no hits.
BS07650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:54 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:09 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 123..783 | 8..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:52 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 141..782 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:54 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 123..783 | 8..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:14 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 141..782 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:14 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9625222..9625332 | 548..658 | 100 | <- | Minus |
3R | 9625427..9625564 | 410..547 | 100 | <- | Minus |
3R | 9625669..9625959 | 119..409 | 100 | <- | Minus |
3R | 9626235..9626336 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:52 Download gff for
BS07650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5450944..5451054 | 548..658 | 100 | <- | Minus |
arm_3R | 5451149..5451286 | 410..547 | 100 | <- | Minus |
arm_3R | 5451391..5451681 | 119..409 | 100 | <- | Minus |
arm_3R | 5451957..5452058 | 17..118 | 100 | | Minus |
BS07650.pep Sequence
Translation from 16 to 657
> BS07650.pep
MTKLASTASLLLLVLSLGWAKLEEKPREKRQSNKLHITLLYESLCPDSRN
FMHQLGPVYEEFGDYIDILLVPFGKSQSERNGAIFHCQHGPAECKGNRLQ
SCVINSTANQAAQVKFVVCQMLAPDYSRIDQCANEAGLLTDVVHCLSSET
GTKLQLQAELVTKQYSPSFIPTIVYNGVFDQQLQDHSLRDFRGTVCYMLR
QQNLLPSSSTICQ*
BS07650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-PA | 213 | CG9427-PA | 1..213 | 1..213 | 1113 | 100 | Plus |
CG9427-PB | 212 | CG9427-PB | 22..212 | 23..213 | 956 | 95.3 | Plus |
GILT1-PA | 250 | CG9796-PA | 24..208 | 34..196 | 212 | 33.5 | Plus |
CG41378-PD | 205 | CG41378-PD | 1..190 | 13..196 | 195 | 30.1 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..181 | 34..196 | 194 | 31.4 | Plus |