Clone BS07653 Report

Search the DGRC for BS07653

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptSLC5A11-RA
Protein status:BS07653.pep: full length peptide match
Sequenced Size:1835

Clone Sequence Records

BS07653.3prime Sequence

944 bp (802 high quality bases) assembled on 2006-01-06

> BS07653.3prime
ATGGTCTAGAAAGCTTTTAGGATACGTTTAAGAGGTTTTTGTGCGCCTGC
GCATGGAGATTGCGACCACTAAAGCATTCTTTTGGAAGGAATCTGTGAAT
CACTGGTGATATTAGATCCGGATCTAGTGTTTTCATATTTGTGGGTTTGG
TCACAAGGGAGACTAGTGCACCTACCACAATGACTGTGGCCACACCAATG
GGATTTATCCAGTGGTAGGACAGTCGGTACAGTGGAAAAACTTGCTCCTC
ATCTACCCATATATTTTCCCGAAGCGTTACATTGCCCACACATCCCTCCA
CGGATACGGGAAGCTTTTGAGAATTCAATTCACCCGCTGCGATGGTAAAC
TGCGTTCCAAAGGATATCCACCCGGCGAGCAGAGCACTTGCAATTCCGCC
CACAGCAGTGCCTACAGTATTGGCCCAGGGAACGAGCATTCCCAGGGTAA
ACAGGCCAAAAGTGGTTCCAGCTGCGATGGCCGTCATTGAAGTGCAAATG
CTCAGGATTCCACTCAGTTGTTCCAGGACAAATACCAGTGATAGGGCCAC
AAAGCCAAGAACTATAACAGTTGACTTTACCAGAATGGTGGAGGCTCTTT
CACTTGGTTGCATCTTGAAGCAGCCGCGAACTATATCCTCCAGGATTACC
AAGGACGTTGAGTTCAGAACCACAGAAAGGGAGCTCAAGGCAGCTCCAAA
TATGCCGGCTATAAACAAACCAGACATACCATAGATATGACCCACACTCT
GAACGACAAAGAGCGGCAGTAGCTGATCGTCGTGTGTTATTAGTCCCGCA
CTCAGAGGATCACAATCTTTGTACATCTCATAGATTAGCAGTCCCACATA
ACAACAAACAGAGACGAAAGCAGCCACGCCAATGGTAAAAATGGCCATGG
AAGCACGAGCCTTCTTGAGCGATGGAAGAGACATGTATCGCTGG

BS07653.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8451-PA 1803 CG8451-RA 876..1803 944..17 4590 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
SLC5A11-RA 2660 CG8451-RA 1313..2242 944..15 4620 99.8 Minus
CG33124-RD 2094 CG33124-RD 1134..1910 846..70 720 73.7 Minus
CG31668-RC 1963 CG31668-RC 1111..1856 817..72 565 72.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8201017..8201708 93..784 3460 100 Plus
2L 23513712 2L 8201762..8201921 785..944 770 98.8 Plus
2L 23513712 2L 2206800..2207487 93..780 515 71.7 Plus
2L 23513712 2L 2203908..2204598 93..783 470 71.2 Plus
2L 23513712 2L 8200883..8200962 15..94 400 100 Plus
3R 32079331 3R 17217367..17217710 99..442 310 72.7 Plus
Blast to na_te.dros performed on 2015-02-12 00:25:45 has no hits.

BS07653.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:25 Download gff for BS07653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8451-PA 876..1803 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:51 Download gff for BS07653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8451-PA 876..1803 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:01 Download gff for BS07653.3prime
Subject Subject Range Query Range Percent Splice Strand
SLC5A11-RA 1313..2242 15..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:54 Download gff for BS07653.3prime
Subject Subject Range Query Range Percent Splice Strand
SLC5A11-RA 1313..2242 15..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:54 Download gff for BS07653.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8200883..8200960 15..92 100 <- Plus
2L 8201017..8201708 93..784 100 <- Plus
2L 8201762..8201921 785..944 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:01 Download gff for BS07653.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8200883..8200960 15..92 100 <- Plus
arm_2L 8201017..8201708 93..784 100 <- Plus
arm_2L 8201762..8201921 785..944 98   Plus

BS07653.5prime Sequence

985 bp (793 high quality bases) assembled on 2006-01-06

> BS07653.5prime
GAAGTTATCAGTCGACATGGAAGCGGTGGCAAAGAAGGGCATGGAGAACT
ACAGATTTGGCAGTGTGGACTATGCTGTTTTCCTGGGCATGATCGTATTA
TCCACCAGCACGGGCATCTATTTCGGGTGCATCAAGAAGAGCAAGGTGAA
GCTCGAGGAGGCGGAACCCACTCTGCCGACGACCACGCCAAAAAGGCGGA
AACACGATTTCGGATCGGAGAAGATGAGCGAGTATCTGCTAGGGTCACGC
AATCTGAAAGTTTTCCCCGTTGCCATGAGCCTGATAGCCAGCTATATATC
GGGCGTTACCATACTGGGCACAACCTCTGAGATCTACAATTATGGCACGC
AATATTGGTTTATAGCCATAGCAATAATGCTCCAAGGTATTGCCGTCTCC
TACGTCTACATACCAGTGTTCTCGGCTCTTCAAGTAGGCTCTTCCTATGA
GTACTTGGAGATGCGCTTTCATTCGGTCGTACGAAGTATTGCATCCTTTA
TGTTTATTCTGGATGAGATTCTGTTTCTGCCTTTCATTGTGTATGTACCA
GCTATAGCTCTGAATCAGGTATCGGGCATTAATCTCCATGTGATTGCAGT
GGTAATTGTGGTCGTGTGTGTTTTCTACACCTTTGTCGGAGGAATCAAAG
CAGTGGTCCACACAGATGCTTGGCAGGTGCTGGTCATGTTCCTTTCCGTT
CTTGCTGTGGCTATTTTGGCCACTGTCTATGCAAATGGCTTGAATGTCCT
TTTCGATGATGCTGCCAAAGGTGGCCGATTGATCTTTAACAATACAAACC
CATCGCCTTATGTAAGGCACACTGTTTGGAGCGTCCTAATCGGGGGATTC
TCCTACTGGACCTCATTCAATGCCGTCCACCAGAACATGGTCCAGCGATA
CATGTCTCTTCCATCGCTCAAGAAGGCTCGTGCTTCCATGGGCATTTTTA
CAATTGCCGTGACTGCCTTCGTCTCTGTTTGGTTG

BS07653.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8451-PA 1803 CG8451-RA 1..965 17..981 4675 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
SLC5A11-RA 2660 CG8451-RA 438..1402 17..981 4735 99.4 Plus
CG31668-RC 1963 CG31668-RC 304..566 212..474 475 78.7 Plus
CG33124-RD 2094 CG33124-RD 353..616 209..472 420 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8201832..8202175 981..638 1645 98.5 Minus
2L 23513712 2L 8203087..8203250 451..288 820 100 Minus
2L 23513712 2L 8203314..8203469 291..136 780 100 Minus
2L 23513712 2L 8203526..8203637 136..25 545 99.1 Minus
2L 23513712 2L 8202231..8202300 638..569 350 100 Minus
2L 23513712 2L 8202468..8202535 517..450 340 100 Minus
2L 23513712 2L 8202358..8202411 569..516 270 100 Minus
2L 23513712 2L 2205487..2205612 451..326 255 80.2 Minus
2L 23513712 2L 2208611..2208690 288..209 205 83.8 Minus
Blast to na_te.dros performed on 2015-02-11 13:06:55 has no hits.

BS07653.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:26 Download gff for BS07653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8451-PA 1..968 17..985 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:53 Download gff for BS07653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8451-PA 1..968 17..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:18 Download gff for BS07653.5prime
Subject Subject Range Query Range Percent Splice Strand
SLC5A11-RA 431..1405 9..985 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:30 Download gff for BS07653.5prime
Subject Subject Range Query Range Percent Splice Strand
SLC5A11-RA 431..1405 9..985 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:30 Download gff for BS07653.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8201829..8202175 638..985 98 <- Minus
2L 8202232..8202299 570..637 100 <- Minus
2L 8202358..8202409 518..569 100 <- Minus
2L 8202468..8202533 452..517 100 <- Minus
2L 8203087..8203246 292..451 100 <- Minus
2L 8203314..8203469 136..291 100 <- Minus
2L 8203527..8203637 25..135 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:18 Download gff for BS07653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8203527..8203637 25..135 99   Minus
arm_2L 8201829..8202175 638..985 98 <- Minus
arm_2L 8202232..8202299 570..637 100 <- Minus
arm_2L 8202358..8202409 518..569 100 <- Minus
arm_2L 8202468..8202533 452..517 100 <- Minus
arm_2L 8203087..8203246 292..451 100 <- Minus
arm_2L 8203314..8203469 136..291 100 <- Minus

BS07653.complete Sequence

1835 bp assembled on 2008-08-14

GenBank Submission: FJ635936

> BS07653.complete
GAAGTTATCAGTCGACATGGAAGCGGTGGCAAAGAAGGGCATGGAGAACT
ACAGATTTGGCAGTGTGGACTATGCTGTTTTCCTGGGCATGATCGTATTA
TCCACCAGCACGGGCATCTATTTCGGGTGCATCAAGAAGAGCAAGGTGAA
GCTCGAGGAGGCGGAACCCACTCTGCCGACGACCACGCCAAAAAGGCGGA
AACACGATTTCGGATCGGAGAAGATGAGCGAGTATCTGCTAGGGTCACGC
AATCTGAAAGTTTTCCCCGTTGCCATGAGCCTGATAGCCAGCTATATATC
GGGCGTTACCATACTGGGCACAACCTCTGAGATCTACAATTATGGCACGC
AATATTGGTTTATAGCCATAGCAATAATGCTCCAAGGTATTGCCGTCTCC
TACGTCTACATACCAGTGTTCTCGGCTCTTCAAGTAGGCTCTTCCTATGA
GTACTTGGAGATGCGCTTTCATTCGGTCGTACGAAGTATTGCATCCTTTA
TGTTTATTCTGGATGAGATTCTGTTTCTGCCTTTCATTGTGTATGTACCA
GCTATAGCTCTGAATCAGGTATCGGGCATTAATCTCCATGTGATTGCAGT
GGTAATTGTGGTCGTGTGTGTTTTCTACACCTTTGTCGGAGGAATCAAAG
CAGTGGTCCACACAGATGCTTGGCAGGTGCTGGTCATGTTCCTTTCCGTT
CTTGCTGTGGCTATTTTGGCCACTGTCTATGCAAATGGCTTGAATGTCCT
TTTCGATGATGCTGCCAAAGGTGGCCGATTGATCTTTAACAATACAAACC
CATCGCCTTATGTAAGGCACACTGTTTGGAGCGTCCTAATCGGGGGATTC
TCCTACTGGACCTCATTCAATGCCGTCAACCAGACCATGGTCCAGCGATA
CATGTCTCTTCCATCGCTCAAGAAGGCTCGTGCTTCCATGGCCATTTTTA
CAATTGGCGTGGCTGCCTTCGTCTCTGTTTGTTGTTATGTGGGACTGCTA
ATCTATGAGATGTACAAAGATTGTGATCCTCTGAGTGCGGGACTAATAAC
ACACGACGATCAGCTACTGCCGCTCTTTGTCGTTCAGAGTGTGGGTCATA
TCTATGGTATGTCTGGTTTGTTTATAGCCGGCATATTTGGAGCTGCCTTG
AGCTCCCTTTCTGTGGTTCTGAACTCAACGTCCTTGGTAATCCTGGAGGA
TATAGTTCGCGGCTGCTTCAAGATGCAACCAAGTGAAAGAGCCTCCACCA
TTCTGGTAAAGTCAACTGTTATAGTTCTTGGCTTTGTGGCCCTATCACTG
GTATTTGTCCTGGAACAACTGAGTGGAATCCTGAGCATTTGCACTTCAAT
GACGGCCATCGCAGCTGGAACCACTTTTGGCCTGTTTACCCTGGGAATGC
TCGTTCCCTGGGCCAATACTGTAGGCACTGCTGTGGGCGGAATTGCAAGT
GCTCTGCTCGCCGGGTGGATATCCTTTGGAACGCAGTTTACCATCGCAGC
GGGTGAATTGAATTCTCAAAAGCTTCCCGTATCCGTGGAGGGATGTGTGG
GCAATGTAACGCTTCGGGAAAATATATGGGTAGATGAGGAGCAAGTTTTT
CCACTGTACCGACTGTCCTACCACTGGATAAATCCCATTGGTGTGGCCAC
AGTCATTGTGGTAGGTGCACTAGTCTCCCTTGTGACCAAACCCACAAATA
TGAAAACACTAGATCCGGATCTAATATCACCAGTGATTCACAGATTCCTT
CCAAAAGAATGCTTTAGTGGTCGCAATCTCCATGCGCAGGCGCACAAAAA
CCTCTTAAACGTATCCTAAAAGCTTTCTAGACCAT

BS07653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
SLC5A11-RA 1803 CG8451-PA 1..1803 17..1819 9000 99.9 Plus
CG33124-RD 1767 CG33124-PD 938..1714 990..1766 720 72.8 Plus
CG31668-RC 1773 CG31668-PC 973..1718 1019..1764 565 71.7 Plus
CG33124-RD 1767 CG33124-PD 157..420 209..472 420 77.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
SLC5A11-RA 2660 CG8451-RA 438..2242 17..1821 9010 99.9 Plus
CG33124-RD 2094 CG33124-RD 1134..1910 990..1766 720 72.8 Plus
CG31668-RC 1963 CG31668-RC 1111..1856 1019..1764 565 71.7 Plus
CG33124-RD 2094 CG33124-RD 353..616 209..472 420 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8201017..8201708 1743..1052 3460 100 Minus
2L 23513712 2L 8201762..8202175 1051..638 2070 100 Minus
2L 23513712 2L 8203087..8203250 451..288 820 100 Minus
2L 23513712 2L 8203314..8203469 291..136 780 100 Minus
2L 23513712 2L 8203526..8203637 136..25 545 99.1 Minus
2L 23513712 2L 2206800..2207487 1743..1056 515 71.7 Minus
2L 23513712 2L 2203908..2204598 1743..1053 470 71.2 Minus
2L 23513712 2L 8200883..8200962 1821..1742 400 100 Minus
2L 23513712 2L 8202231..8202300 638..569 350 100 Minus
2L 23513712 2L 8202468..8202535 517..450 340 100 Minus
3R 32079331 3R 17217367..17217710 1737..1394 310 72.7 Minus
2L 23513712 2L 8202358..8202411 569..516 270 100 Minus
2L 23513712 2L 2205487..2205612 451..326 255 80.2 Minus
2L 23513712 2L 2208611..2208690 288..209 205 83.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:06:09 has no hits.

BS07653.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:18 Download gff for BS07653.complete
Subject Subject Range Query Range Percent Splice Strand
CG8451-RA 427..2238 9..1821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:39 Download gff for BS07653.complete
Subject Subject Range Query Range Percent Splice Strand
SLC5A11-RA 438..2238 17..1817 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:55 Download gff for BS07653.complete
Subject Subject Range Query Range Percent Splice Strand
CG8451-RA 434..2234 17..1817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:19 Download gff for BS07653.complete
Subject Subject Range Query Range Percent Splice Strand
SLC5A11-RA 438..2238 17..1817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:19 Download gff for BS07653.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8200887..8200960 1744..1817 100 <- Minus
2L 8201017..8201708 1052..1743 100 <- Minus
2L 8201762..8202175 638..1051 100 <- Minus
2L 8202232..8202299 570..637 100 <- Minus
2L 8202358..8202409 518..569 100 <- Minus
2L 8202468..8202533 452..517 100 <- Minus
2L 8203087..8203246 292..451 100 <- Minus
2L 8203314..8203469 136..291 100 <- Minus
2L 8203527..8203637 25..135 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:39 Download gff for BS07653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8200887..8200960 1744..1817 100 <- Minus
arm_2L 8201017..8201708 1052..1743 100 <- Minus
arm_2L 8201762..8202175 638..1051 100 <- Minus
arm_2L 8202232..8202299 570..637 100 <- Minus
arm_2L 8202358..8202409 518..569 100 <- Minus
arm_2L 8202468..8202533 452..517 100 <- Minus
arm_2L 8203087..8203246 292..451 100 <- Minus
arm_2L 8203314..8203469 136..291 100 <- Minus
arm_2L 8203527..8203637 25..135 99   Minus

BS07653.pep Sequence

Translation from 16 to 1818

> BS07653.pep
MEAVAKKGMENYRFGSVDYAVFLGMIVLSTSTGIYFGCIKKSKVKLEEAE
PTLPTTTPKRRKHDFGSEKMSEYLLGSRNLKVFPVAMSLIASYISGVTIL
GTTSEIYNYGTQYWFIAIAIMLQGIAVSYVYIPVFSALQVGSSYEYLEMR
FHSVVRSIASFMFILDEILFLPFIVYVPAIALNQVSGINLHVIAVVIVVV
CVFYTFVGGIKAVVHTDAWQVLVMFLSVLAVAILATVYANGLNVLFDDAA
KGGRLIFNNTNPSPYVRHTVWSVLIGGFSYWTSFNAVNQTMVQRYMSLPS
LKKARASMAIFTIGVAAFVSVCCYVGLLIYEMYKDCDPLSAGLITHDDQL
LPLFVVQSVGHIYGMSGLFIAGIFGAALSSLSVVLNSTSLVILEDIVRGC
FKMQPSERASTILVKSTVIVLGFVALSLVFVLEQLSGILSICTSMTAIAA
GTTFGLFTLGMLVPWANTVGTAVGGIASALLAGWISFGTQFTIAAGELNS
QKLPVSVEGCVGNVTLRENIWVDEEQVFPLYRLSYHWINPIGVATVIVVG
ALVSLVTKPTNMKTLDPDLISPVIHRFLPKECFSGRNLHAQAHKNLLNVS
*

BS07653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
SLC5A11-PA 600 CG8451-PA 1..600 1..600 3038 100 Plus
CG31668-PC 590 CG31668-PC 1..585 9..595 2085 66.3 Plus
CG33124-PD 588 CG33124-PD 1..576 9..588 2056 66.9 Plus
CG31262-PB 579 CG31262-PB 1..578 9..597 2027 64.2 Plus
CG31262-PE 579 CG31262-PE 1..578 9..597 2027 64.2 Plus