Clone BS07654 Report

Search the DGRC for BS07654

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG32700-RA
Protein status:BS07654.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07654.3prime Sequence

687 bp (686 high quality bases) assembled on 2006-01-06

> BS07654.3prime
ATGGTCTAGAAAGCTTTTATGTCTGCACGGGCACATTGCTATCGGCCTCC
TGCAGAACGGGCGCTGTCCAGACGCCGCTTCCGCTGCGCGTCTTCCGCTG
CTGGACGATGCCATCCATGATGTCCAGCTGCAAGTTGTGCACGCTGCCGC
GGTGATCGGTTAATGGCGGTCCGGCGATGACGCTGCCACGGCGACTGCCA
CTGAAGGATACACCGGAAATGGACTCGCGGCGATTGCGTCCGAAAAGCGT
TGGCGGCACCGCCGATATGGTGACCACCGAGTGCCTACGTCCACCGGCCG
TCGGATTGGCCTTCTGCGAGAGCGTGGCCAGAAACTCGACCTCCTTGGGA
CTGAGCCCGCCAGTCTCGCCGCCCACCTCCGACAATCGACGCACCTGACT
GGCGGTGATGCCCTCGGTAATTTGAAGCGATGGCAGCGAATGCTTGCGTC
GCTGTTGCATATCGGGAAATGGGCAAAGCAGATAGGGATTCACCGGCGAG
TCCGGTTCGGAGTCATCGCTGTTGGAACGGCGTGTCCCGGCCGCAGTGGG
ATCACATCCACCGGCGGCACCCTCCAAGTCATCACCATCCTCGGCGGTGT
GCGATTCCTCCACCACGATCAGCGGCTCCTGGGTGCTCAAGTTGAAGACG
GGCGTGAACGAGGAGCGACGCATGTCGACTGATAACT

BS07654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PA 657 CG32700-RA 1..657 673..17 3285 100 Minus
CG32700-PB 657 CG32700-RB 1..657 673..17 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 4208 CG32700-RB 442..1098 673..17 3285 100 Minus
CG32700-RA 1441 CG32700-RA 438..1094 673..17 3285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9510160..9510632 201..673 2365 100 Plus
X 23542271 X 9507079..9507265 17..203 935 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:52:00 has no hits.

BS07654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:28 Download gff for BS07654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:54 Download gff for BS07654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PB 1..657 17..673 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:06 Download gff for BS07654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 12..681 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:05 Download gff for BS07654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 12..681 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:05 Download gff for BS07654.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9507073..9507262 12..200 98 <- Plus
X 9510160..9510640 201..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:06 Download gff for BS07654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9401106..9401295 12..200 98 <- Plus
arm_X 9404193..9404673 201..681 99   Plus

BS07654.5prime Sequence

687 bp (686 high quality bases) assembled on 2006-01-06

> BS07654.5prime
GAAGTTATCAGTCGACATGCGTCGCTCCTCGTTCACGCCCGTCTTCAACT
TGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCACACCGCCGAG
GATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATCCCACTGCGGC
CGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGACTCGCCGGTGA
ATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCGACGCAAGCAT
TCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCAGTCAGGTGCG
TCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGTCCCAAGGAGG
TCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGACGGCCGGTGGA
CGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAACGCTTTTCGG
ACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGTGGCAGTCGCC
GTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCGCGGCAGCGTG
CACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGCAGCGGAAGAC
GCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAGGAGGCCGATA
GCAATGTGCCCGTGCAGACATAAAAGCTTTCTAGACC

BS07654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PA 657 CG32700-RA 1..657 17..673 3285 100 Plus
CG32700-PB 657 CG32700-RB 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 4208 CG32700-RB 442..1098 17..673 3285 100 Plus
CG32700-RA 1441 CG32700-RA 438..1094 17..673 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9510160..9510632 489..17 2365 100 Minus
X 23542271 X 9507079..9507265 673..487 935 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:06:43 has no hits.

BS07654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:29 Download gff for BS07654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:56 Download gff for BS07654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-PB 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:54:41 Download gff for BS07654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 9..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:07 Download gff for BS07654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 430..1100 9..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:07 Download gff for BS07654.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9507073..9507262 490..678 98 <- Minus
X 9510160..9510640 9..489 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:54:41 Download gff for BS07654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9401106..9401295 490..678 98 <- Minus
arm_X 9404193..9404673 9..489 99   Minus

BS07654.complete Sequence

689 bp (689 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635937

> BS07654.complete
GAAGTTATCAGTCGACATGCGTCGCTCCTCGTTCACGCCCGTCTTCAACT
TGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCACACCGCCGAG
GATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATCCCACTGCGGC
CGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGACTCGCCGGTGA
ATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCGACGCAAGCAT
TCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCAGTCAGGTGCG
TCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGTCCCAAGGAGG
TCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGACGGCCGGTGGA
CGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAACGCTTTTCGG
ACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGTGGCAGTCGCC
GTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCGCGGCAGCGTG
CACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGCAGCGGAAGAC
GCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAGGAGGCCGATA
GCAATGTGCCCGTGCAGACATAAAAGCTTTCTAGACCAT

BS07654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 657 CG32700-PB 1..657 17..673 3285 100 Plus
CG32700-RA 657 CG32700-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-RB 4208 CG32700-RB 442..1098 17..673 3285 100 Plus
CG32700-RA 1441 CG32700-RA 438..1094 17..673 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9510160..9510632 489..17 2365 100 Minus
X 23542271 X 9507079..9507265 673..487 935 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:18:56 has no hits.

BS07654.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:03 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:57 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 825..1495 9..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:40 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 438..1092 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:04 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 825..1495 9..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:26 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 438..1092 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:26 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
X 9507081..9507262 490..671 100 <- Minus
X 9510160..9510632 17..489 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:40 Download gff for BS07654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9401114..9401295 490..671 100 <- Minus
arm_X 9404193..9404665 17..489 100   Minus

BS07654.pep Sequence

Translation from 16 to 672

> BS07654.pep
MRRSSFTPVFNLSTQEPLIVVEESHTAEDGDDLEGAAGGCDPTAAGTRRS
NSDDSEPDSPVNPYLLCPFPDMQQRRKHSLPSLQITEGITASQVRRLSEV
GGETGGLSPKEVEFLATLSQKANPTAGGRRHSVVTISAVPPTLFGRNRRE
SISGVSFSGSRRGSVIAGPPLTDHRGSVHNLQLDIMDGIVQQRKTRSGSG
VWTAPVLQEADSNVPVQT*

BS07654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PB 218 CG32700-PB 1..218 1..218 1120 100 Plus
CG32700-PA 218 CG32700-PA 1..218 1..218 1120 100 Plus
CG6123-PB 614 CG6123-PB 44..247 12..215 458 53.7 Plus
CG6123-PA 614 CG6123-PA 44..247 12..215 458 53.7 Plus