Clone BS07656 Report

Search the DGRC for BS07656

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptHs2st-RA
Protein status:BS07656.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07656.3prime Sequence

875 bp (822 high quality bases) assembled on 2006-01-06

> BS07656.3prime
ATGGTCTAGAAAGCTTTCATTTGGGCCGAATCTTCTCGTACATGAATTTC
TGCACGTGCTTGTTGTCCGGCTGCATGAGCTTCTTCTTGTTGAACTCGAA
TTGGGCCAGCGCGAAATCGTACAGATCGTTTTCCATTTGCCAGATTTTTG
TCTTTTGAATGGATTTAATTGTCGATTCGCTGGGCGGAAGCTTGGAAGAT
GTCACCCGCAGATGAGATTTGTTTGAATTATGATAGTGCTCACGAAAGCC
GTGAAAAATTCTTGGAAGGGATCTCTCGAGCAGATCCACAAACTCGTACA
TCTGCTCTGTGACTCCGACTAGGAAGTATTCGTTGACTAGATTGCGCTTG
GCCTGGTCCAAGGCCCAACTGCTGCCGGGTTCCCAGCACTCGGCTGCATG
GCCACAGAAGAAGGGTATCTGCAGCCACATGTTTTTGGGATCACAGTCGG
GTTGTTTCTGCACCACGCACTCATCGAAGGTAATTTTATTGCCCGCCTTC
TTGCGGACTAAATTCGGTCGGTAGTTGTCGCCAAAGCGTAGAAAGTAATA
GTAGGAGACAAGTCTGTCGAGCGGTTTGCGCACCAAATTGATGTAGATGG
GCTTGTGGGCGATTTGGAATTTTGAGAAGTCTAGGAAGGCCATGTGGCCG
TGATAAAGAGCTGGCTTCATCTCGTGCCACCTGGAAACATTGCGCACGAA
TTGGATTTGATTGGGAAGCGAGAGGACGTGCATGTTGGCAGTGACATTGA
TGTGCAGCACATGGAATTTATTGGGCTTGCACAGATCGTATGCTATGTTA
ACAAAGCTGGTGGATCCCGTTTTCGGTACGCGATTGTAAAGCACCACTAG
GTGCTCCTCGAAGTCAAAGTCATCG

BS07656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10234-PA 1050 Hs2st-RA 192..1050 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1652 CG10234-RA 323..1181 875..17 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19444109..19444363 621..875 1275 100 Plus
2L 23513712 2L 19443304..19443549 17..262 1230 100 Plus
2L 23513712 2L 19443631..19443851 261..481 1105 100 Plus
2L 23513712 2L 19443912..19444050 482..620 695 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:09:42 has no hits.

BS07656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:29 Download gff for BS07656.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-PA 192..1050 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:57 Download gff for BS07656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10234-PA 192..1050 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:06 Download gff for BS07656.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 334..1196 13..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:42 Download gff for BS07656.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 323..1185 13..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:42 Download gff for BS07656.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19443300..19443547 13..260 99 <- Plus
2L 19443631..19443851 261..481 100 <- Plus
2L 19443912..19444050 482..620 100 <- Plus
2L 19444109..19444363 621..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:06 Download gff for BS07656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19443912..19444050 482..620 100 <- Plus
arm_2L 19443631..19443851 261..481 100 <- Plus
arm_2L 19443300..19443547 13..260 99 <- Plus
arm_2L 19444109..19444363 621..875 100   Plus

BS07656.5prime Sequence

894 bp (787 high quality bases) assembled on 2006-01-06

> BS07656.5prime
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCT

BS07656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10234-PA 1050 Hs2st-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1652 CG10234-RA 131..1009 16..894 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19444109..19444428 462..143 1600 100 Minus
2L 23513712 2L 19443631..19443851 822..602 1105 100 Minus
2L 23513712 2L 19443912..19444050 601..463 695 100 Minus
2L 23513712 2L 19444493..19444620 143..16 640 100 Minus
2L 23513712 2L 19443476..19443549 894..821 370 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:52:19 has no hits.

BS07656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:31 Download gff for BS07656.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:59 Download gff for BS07656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10234-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:14 Download gff for BS07656.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 139..1020 10..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:02 Download gff for BS07656.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 128..1009 10..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:02 Download gff for BS07656.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19443476..19443547 823..894 100 <- Minus
2L 19443631..19443851 602..822 100 <- Minus
2L 19443912..19444050 463..601 100 <- Minus
2L 19444109..19444427 144..462 100 <- Minus
2L 19444493..19444623 10..143 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:14 Download gff for BS07656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19443631..19443851 602..822 100 <- Minus
arm_2L 19443912..19444050 463..601 100 <- Minus
arm_2L 19443476..19443547 823..894 100 <- Minus
arm_2L 19444109..19444427 144..462 100 <- Minus
arm_2L 19444493..19444623 10..143 97   Minus

BS07656.complete Sequence

1082 bp (1082 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635938

> BS07656.complete
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCC
CAGCGAATCGACAATTAAATCCATTCAAAAGACAAAAATCTGGCAAATGG
AAAACGATCTGTACGATTTCGCGCTGGCCCAATTCGAGTTCAACAAGAAG
AAGCTCATGCAGCCGGACAACAAGCACGTGCAGAAATTCATGTACGAGAA
GATTCGGCCCAAATGAAAGCTTTCTAGACCAT

BS07656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1050 CG10234-PA 1..1050 17..1066 5250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1652 CG10234-RA 131..1181 16..1066 5255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19444109..19444428 462..143 1600 100 Minus
2L 23513712 2L 19443304..19443549 1066..821 1230 100 Minus
2L 23513712 2L 19443631..19443851 822..602 1105 100 Minus
2L 23513712 2L 19443912..19444050 601..463 695 100 Minus
2L 23513712 2L 19444493..19444620 143..16 640 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:50:19 has no hits.

BS07656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:05 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 17..1066 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:58 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 139..1196 10..1070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:47 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 149..1191 23..1065 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:05 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 139..1196 10..1070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:06 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 138..1180 23..1065 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:06 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19443631..19443851 602..822 100 <- Minus
2L 19443912..19444050 463..601 100 <- Minus
2L 19443305..19443547 823..1065 100 <- Minus
2L 19444109..19444427 144..462 100 <- Minus
2L 19444493..19444613 23..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:47 Download gff for BS07656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19443305..19443547 823..1065 100 <- Minus
arm_2L 19443631..19443851 602..822 100 <- Minus
arm_2L 19443912..19444050 463..601 100 <- Minus
arm_2L 19444109..19444427 144..462 100 <- Minus
arm_2L 19444493..19444613 23..143 100   Minus

BS07656.pep Sequence

Translation from 16 to 1065

> BS07656.pep
MFRKLLKMWILLRPTHWLILIALCAVTCAGYWLLWSEIRLEHAFKPLSKL
GDSLSPDQHASSTTDDFDFEEHLVVLYNRVPKTGSTSFVNIAYDLCKPNK
FHVLHINVTANMHVLSLPNQIQFVRNVSRWHEMKPALYHGHMAFLDFSKF
QIAHKPIYINLVRKPLDRLVSYYYFLRFGDNYRPNLVRKKAGNKITFDEC
VVQKQPDCDPKNMWLQIPFFCGHAAECWEPGSSWALDQAKRNLVNEYFLV
GVTEQMYEFVDLLERSLPRIFHGFREHYHNSNKSHLRVTSSKLPPSESTI
KSIQKTKIWQMENDLYDFALAQFEFNKKKLMQPDNKHVQKFMYEKIRPK*

BS07656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-PA 349 CG10234-PA 1..349 1..349 1898 100 Plus
pip-PA 413 CG9614-PA 124..382 74..318 256 28.4 Plus
pip-PN 513 CG9614-PN 169..476 37..318 246 26.8 Plus
pip-PL 514 CG9614-PL 170..477 37..318 246 26.8 Plus
pip-PI 358 CG9614-PI 124..339 74..275 237 30.6 Plus