Clone Sequence Records
BS07656.3prime Sequence
875 bp (822 high quality bases) assembled on 2006-01-06
> BS07656.3prime
ATGGTCTAGAAAGCTTTCATTTGGGCCGAATCTTCTCGTACATGAATTTC
TGCACGTGCTTGTTGTCCGGCTGCATGAGCTTCTTCTTGTTGAACTCGAA
TTGGGCCAGCGCGAAATCGTACAGATCGTTTTCCATTTGCCAGATTTTTG
TCTTTTGAATGGATTTAATTGTCGATTCGCTGGGCGGAAGCTTGGAAGAT
GTCACCCGCAGATGAGATTTGTTTGAATTATGATAGTGCTCACGAAAGCC
GTGAAAAATTCTTGGAAGGGATCTCTCGAGCAGATCCACAAACTCGTACA
TCTGCTCTGTGACTCCGACTAGGAAGTATTCGTTGACTAGATTGCGCTTG
GCCTGGTCCAAGGCCCAACTGCTGCCGGGTTCCCAGCACTCGGCTGCATG
GCCACAGAAGAAGGGTATCTGCAGCCACATGTTTTTGGGATCACAGTCGG
GTTGTTTCTGCACCACGCACTCATCGAAGGTAATTTTATTGCCCGCCTTC
TTGCGGACTAAATTCGGTCGGTAGTTGTCGCCAAAGCGTAGAAAGTAATA
GTAGGAGACAAGTCTGTCGAGCGGTTTGCGCACCAAATTGATGTAGATGG
GCTTGTGGGCGATTTGGAATTTTGAGAAGTCTAGGAAGGCCATGTGGCCG
TGATAAAGAGCTGGCTTCATCTCGTGCCACCTGGAAACATTGCGCACGAA
TTGGATTTGATTGGGAAGCGAGAGGACGTGCATGTTGGCAGTGACATTGA
TGTGCAGCACATGGAATTTATTGGGCTTGCACAGATCGTATGCTATGTTA
ACAAAGCTGGTGGATCCCGTTTTCGGTACGCGATTGTAAAGCACCACTAG
GTGCTCCTCGAAGTCAAAGTCATCG
BS07656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10234-PA | 1050 | Hs2st-RA | 192..1050 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1652 | CG10234-RA | 323..1181 | 875..17 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19444109..19444363 | 621..875 | 1275 | 100 | Plus |
2L | 23513712 | 2L | 19443304..19443549 | 17..262 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 19443631..19443851 | 261..481 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 19443912..19444050 | 482..620 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:09:42 has no hits.
BS07656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:29 Download gff for
BS07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-PA | 192..1050 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:57 Download gff for
BS07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10234-PA | 192..1050 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:06 Download gff for
BS07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 334..1196 | 13..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:42 Download gff for
BS07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 323..1185 | 13..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:42 Download gff for
BS07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19443300..19443547 | 13..260 | 99 | <- | Plus |
2L | 19443631..19443851 | 261..481 | 100 | <- | Plus |
2L | 19443912..19444050 | 482..620 | 100 | <- | Plus |
2L | 19444109..19444363 | 621..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:06 Download gff for
BS07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19443912..19444050 | 482..620 | 100 | <- | Plus |
arm_2L | 19443631..19443851 | 261..481 | 100 | <- | Plus |
arm_2L | 19443300..19443547 | 13..260 | 99 | <- | Plus |
arm_2L | 19444109..19444363 | 621..875 | 100 | | Plus |
BS07656.5prime Sequence
894 bp (787 high quality bases) assembled on 2006-01-06
> BS07656.5prime
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCT
BS07656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10234-PA | 1050 | Hs2st-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1652 | CG10234-RA | 131..1009 | 16..894 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19444109..19444428 | 462..143 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 19443631..19443851 | 822..602 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 19443912..19444050 | 601..463 | 695 | 100 | Minus |
2L | 23513712 | 2L | 19444493..19444620 | 143..16 | 640 | 100 | Minus |
2L | 23513712 | 2L | 19443476..19443549 | 894..821 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:52:19 has no hits.
BS07656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:31 Download gff for
BS07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:11:59 Download gff for
BS07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10234-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:14 Download gff for
BS07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 139..1020 | 10..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:02 Download gff for
BS07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 128..1009 | 10..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:02 Download gff for
BS07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19443476..19443547 | 823..894 | 100 | <- | Minus |
2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
2L | 19444493..19444623 | 10..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:14 Download gff for
BS07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
arm_2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
arm_2L | 19443476..19443547 | 823..894 | 100 | <- | Minus |
arm_2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
arm_2L | 19444493..19444623 | 10..143 | 97 | | Minus |
BS07656.complete Sequence
1082 bp (1082 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635938
> BS07656.complete
GAAGTTATCAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGC
TCCGACCCACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGT
GCAGGTTACTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAA
GCCGCTTTCCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGT
CCACCACCGATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAAT
CGCGTACCGAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCT
GTGCAAGCCCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACA
TGCACGTCCTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCC
AGGTGGCACGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCT
AGACTTCTCAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGG
TGCGCAAACCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTT
GGCGACAACTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAAT
TACCTTCGATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAA
ACATGTGGCTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGG
GAACCCGGCAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAA
CGAATACTTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATC
TGCTCGAGAGATCCCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTAT
CATAATTCAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCC
CAGCGAATCGACAATTAAATCCATTCAAAAGACAAAAATCTGGCAAATGG
AAAACGATCTGTACGATTTCGCGCTGGCCCAATTCGAGTTCAACAAGAAG
AAGCTCATGCAGCCGGACAACAAGCACGTGCAGAAATTCATGTACGAGAA
GATTCGGCCCAAATGAAAGCTTTCTAGACCAT
BS07656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1050 | CG10234-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-RA | 1652 | CG10234-RA | 131..1181 | 16..1066 | 5255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19444109..19444428 | 462..143 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 19443304..19443549 | 1066..821 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 19443631..19443851 | 822..602 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 19443912..19444050 | 601..463 | 695 | 100 | Minus |
2L | 23513712 | 2L | 19444493..19444620 | 143..16 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:50:19 has no hits.
BS07656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:05 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:58 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 139..1196 | 10..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:47 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 149..1191 | 23..1065 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:05 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 139..1196 | 10..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:06 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs2st-RA | 138..1180 | 23..1065 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:06 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
2L | 19443305..19443547 | 823..1065 | 100 | <- | Minus |
2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
2L | 19444493..19444613 | 23..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:47 Download gff for
BS07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19443305..19443547 | 823..1065 | 100 | <- | Minus |
arm_2L | 19443631..19443851 | 602..822 | 100 | <- | Minus |
arm_2L | 19443912..19444050 | 463..601 | 100 | <- | Minus |
arm_2L | 19444109..19444427 | 144..462 | 100 | <- | Minus |
arm_2L | 19444493..19444613 | 23..143 | 100 | | Minus |
BS07656.pep Sequence
Translation from 16 to 1065
> BS07656.pep
MFRKLLKMWILLRPTHWLILIALCAVTCAGYWLLWSEIRLEHAFKPLSKL
GDSLSPDQHASSTTDDFDFEEHLVVLYNRVPKTGSTSFVNIAYDLCKPNK
FHVLHINVTANMHVLSLPNQIQFVRNVSRWHEMKPALYHGHMAFLDFSKF
QIAHKPIYINLVRKPLDRLVSYYYFLRFGDNYRPNLVRKKAGNKITFDEC
VVQKQPDCDPKNMWLQIPFFCGHAAECWEPGSSWALDQAKRNLVNEYFLV
GVTEQMYEFVDLLERSLPRIFHGFREHYHNSNKSHLRVTSSKLPPSESTI
KSIQKTKIWQMENDLYDFALAQFEFNKKKLMQPDNKHVQKFMYEKIRPK*
BS07656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs2st-PA | 349 | CG10234-PA | 1..349 | 1..349 | 1898 | 100 | Plus |
pip-PA | 413 | CG9614-PA | 124..382 | 74..318 | 256 | 28.4 | Plus |
pip-PN | 513 | CG9614-PN | 169..476 | 37..318 | 246 | 26.8 | Plus |
pip-PL | 514 | CG9614-PL | 170..477 | 37..318 | 246 | 26.8 | Plus |
pip-PI | 358 | CG9614-PI | 124..339 | 74..275 | 237 | 30.6 | Plus |