Clone BS07657 Report

Search the DGRC for BS07657

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG10209-RA
Protein status:BS07657.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07657.3prime Sequence

905 bp (848 high quality bases) assembled on 2006-01-06

> BS07657.3prime
ATGGTCTAGAAAGCTTTCATCCGACATTTTCGTAGGACATTGGAGGCCGT
TCGCTGGCGGTCGATCCGAAGATCGTTGGCGGATGGTGTTGCTGTCCCTG
TTGCTGCTGCTGGTGGGGATGCTGTTGCTGTTGCTGGTGGGGATTGTGGC
CATGCTGGTGTTGCTGTGCGGTCGGCTGCTCGTTGCGAAGCTGTCCCAGC
GGAAACATGATGTTGTGGGCCATCTGGGGGTGGTGCAGGTGCTCATTGGG
TGGCGGTGGAGGCGGTTGCTGGTGGGCAGCATGAAGGGCCTGAGCGGCCT
CCACATGCTTGCGTTGCTCGCTTTGCTGTTGCTGTTGCTGCTGATGAACC
TTCTCCACGCTGTTCTCCTCGTACTTCTTCTGAAGTTGGAAAAGAGGCAG
CTGCTGGGAGGTATGAATGGGCACAGCAACTGCGCCTGCAGATGCTACTC
GCTCTACCTGTGATTGAGGCGATGGTTCACGCTCGCCCTTTTCGTATTTC
TTTTGCAACTGGTACATGCTGTGGGACAAGTGAGTAGTCACCGTGCTACT
GCCACTGCTGCTAGAGCTGAGTTTTGAGGAGGTTGACGTAGAGGAGGGCG
CGGGCTTCTCCGCTTTGACAGGCGACTTCTTCTGATACTTCTTCAGTATC
TGCATTAGTTCGGACTTTACATCAAGGCGTATCTCCTCCGGAACTCTCTT
GATCTCTTCGTACAGGGATAAGAGGAACAGCTTGTCGGGATCCCGGTTCT
TGCGCTTCTTGCTCTTTTTTGGAAATGCATCCTGCATGAACTGCAGAAGC
TTCTCCTCAAATGGCGACTCTCTGGATAGTGATCCACTTCCATGCTGGCG
CCTCAACAGGTGTGGATGCAAGCCACCGTGAAAAGCAGGGTGCTGGAGCA
TTCCG

BS07657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-PA 1506 CG10209-RA 618..1506 905..17 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-RB 2024 CG10209-RB 782..1670 905..17 4445 100 Minus
CG10209-RA 2024 CG10209-RA 782..1670 905..17 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14846418..14847306 17..905 4445 100 Plus
Blast to na_te.dros performed 2015-02-12 12:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..7057 406..98 203 56.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2652 446..79 202 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6683..7018 420..77 194 55.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2549 346..135 190 60.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6985 346..84 189 58.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2628..2871 346..85 184 59.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 345..98 179 57.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6705..7042 423..83 175 55.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2590..2838 345..85 172 58.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2682 180..82 155 65 Minus
roo 9092 roo DM_ROO 9092bp 1057..1147 410..323 133 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2535 525..307 121 54.7 Minus
roo 9092 roo DM_ROO 9092bp 1083..1131 354..306 110 69.4 Minus

BS07657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:32 Download gff for BS07657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-PA 618..1506 17..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:00 Download gff for BS07657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-PA 618..1506 17..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:51:40 Download gff for BS07657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 782..1670 17..905 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:17:16 Download gff for BS07657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 782..1670 17..905 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:17:16 Download gff for BS07657.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14846418..14847306 17..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:51:40 Download gff for BS07657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10733923..10734811 17..905 100   Plus

BS07657.5prime Sequence

896 bp (802 high quality bases) assembled on 2006-01-06

> BS07657.5prime
GAAGTTATCAGTCGACATGGATCGAGTGACCAAGCCGCAGAAGAAGATGC
TCATCACACTGCTGCGGGAAACCAAGTACATGGAGGGCAAAAAGGAGAAG
GAGTGGTATTGGGAGAAGATCCAAGCGGCCCTTAATACTATTGGTCCCAA
GAAGACGATTATTCAGTGGAAAAAGTGCTGGCGCGATATGCGACTGACCA
CAAGGAAAAAGCTGGCGGAACTGAAGCGCTGTCAACTCTCTGGAGGATCT
CCACCACCGGGGATCGAACTAAACCAGGAGGACAACGATATCATCGACAT
TGTGGGCACCGAGTACTTCTACGAGGAGATGAATGGTGAGCTCAAGGCGG
AGAACTTCTTGACCGGCTTGGACTACGCCCCGGAGCATCTGTGCGATGCT
ATTCTCACGGCAGCAGTGGGCCATCACCAGCACAATATGCAGCACCAGAA
GGATCCGCAATCGCATGCAGGGCAACAGCAGCAGCAGGATCATCACACCA
ACGATGGCGAAACCAATGATGCTCCTGGATCAAGCAATGGTGGCTCATAT
CAGGGACACCCAGTATCCCAGTTGCAGGCGCACAATGGCAGCGGTGGAGG
AGGCGAGCATAGCGGCGGTGGTCAATCCCACTCCGGAATGCTCCAGCACC
CTGCTTTTCACGGTGGCTTGCATCCACACCTGTTGAGGCGCCAGCATGGA
AGTGGATCACTATCCAGAGAGTCGCCATTTGAGGAGAAGCTTCTGCAGTT
CATGCAGGATGCATTTCCAAAAAAGAGCAAGAAGCGCAAGAACCGGGATC
CCGACNAGCTGTTCCTCTTATCCCTGTACGAAGAGATCAAGAGAGTTCCG
GAGGAGATACGCCTTGATGTAAAGTCCGAACTAATGCAGATACTGA

BS07657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-PA 1506 CG10209-RA 1..880 17..896 4381 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-RB 2024 CG10209-RB 164..1044 16..896 4394 99.9 Plus
CG10209-RA 2024 CG10209-RA 164..1044 16..896 4394 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14847044..14847766 896..174 3604 99.9 Minus
2R 25286936 2R 14847816..14847972 175..19 785 100 Minus
Blast to na_te.dros performed 2015-02-12 12:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1176 403..515 161 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6775..6872 407..502 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2396 422..504 137 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6828 422..495 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2450 407..516 133 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2780..2950 415..582 128 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2445..2526 422..502 128 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2387 439..516 124 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6803 421..502 124 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2720..2835 392..502 116 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2832 421..485 116 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6901 411..504 116 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1587 422..485 113 64.1 Plus
BS 5142 BS BS 5142bp 2042..2145 428..529 109 60 Plus

BS07657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:33 Download gff for BS07657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:02 Download gff for BS07657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:08 Download gff for BS07657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 160..1043 12..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:33 Download gff for BS07657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 160..1043 12..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:33 Download gff for BS07657.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14847045..14847764 176..895 99 <- Minus
2R 14847816..14847979 8..175 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:08 Download gff for BS07657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10734550..10735269 176..895 99 <- Minus
arm_2R 10735321..10735484 8..175 97   Minus

BS07657.complete Sequence

1538 bp (1538 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635939

> BS07657.complete
GAAGTTATCAGTCGACATGGATCGAGTGACCAAGCCGCAGAAGAAGATGC
TCATCACACTGCTGCGGGAAACCAAGTACATGGAGGGCAAAAAGGAGAAG
GAGTGGTATTGGGAGAAGATCCAAGCGGCCCTTAATACTATTGGTCCCAA
GAAGACGATTATTCAGTGGAAAAAGTGCTGGCGCGATATGCGACTGACCA
CAAGGAAAAAGCTGGCGGAACTGAAGCGCTGTCAACTCTCTGGAGGATCT
CCACCACCGGGGATCGAACTAAACCAGGAGGACAACGATATCATCGACAT
TGTGGGCACCGAGTACTTCTACGAGGAGATGAATGGTGAGCTCAAGGCGG
AGAACTTCTTGACCGGCTTGGACTACGCCCCGGAGCATCTGTGCGATGCT
ATTCTCACGGCAGCAGTGGGCCATCACCAGCACAATATGCAGCACCAGAA
GGATCCGCAATCGCATGCAGGGCAACAGCAGCAGCAGGATCATCACACCA
ACGATGGCGAAACCAATGATGCTCCTGGATCAAGCAATGGTGGCTCATAT
CAGGGACACCCAGTATCCCAGTTGCAGGCGCACAATGGCAGCGGTGGAGG
AGGCGAGCATAGCGGCGGTGGTCAATCCCACTCCGGAATGCTCCAGCACC
CTGCTTTTCACGGTGGCTTGCATCCACACCTGTTGAGGCGCCAGCATGGA
AGTGGATCACTATCCAGAGAGTCGCCATTTGAGGAGAAGCTTCTGCAGTT
CATGCAGGATGCATTTCCAAAAAAGAGCAAGAAGCGCAAGAACCGGGATC
CCGACAAGCTGTTCCTCTTATCCCTGTACGAAGAGATCAAGAGAGTTCCG
GAGGAGATACGCCTTGATGTAAAGTCCGAACTAATGCAGATACTGAAGAA
GTATCAGAAGAAGTCGCCTGTCAAAGCGGAGAAGCCCGCGCCCTCCTCTA
CGTCAACCTCCTCAAAACTCAGCTCTAGCAGCAGTGGCAGTAGCACGGTG
ACTACTCACTTGTCCCACAGCATGTACCAGTTGCAAAAGAAATACGAAAA
GGGCGAGCGTGAACCATCGCCTCAATCACAGGTAGAGCGAGTAGCATCTG
CAGGCGCAGTTGCTGTGCCCATTCATACCTCCCAGCAGCTGCCTCTTTTC
CAACTTCAGAAGAAGTACGAGGAGAACAGCGTGGAGAAGGTTCATCAGCA
GCAACAGCAACAGCAAAGCGAGCAACGCAAGCATGTGGAGGCCGCTCAGG
CCCTTCATGCTGCCCACCAGCAACCGCCTCCACCGCCACCCAATGAGCAC
CTGCACCACCCCCAGATGGCCCACAACATCATGTTTCCGCTGGGACAGCT
TCGCAACGAGCAGCCGACCGCACAGCAACACCAGCATGGCCACAATCCCC
ACCAGCAACAGCAACAGCATCCCCACCAGCAGCAGCAACAGGGACAGCAA
CACCATCCGCCAACGATCTTCGGATCGACCGCCAGCGAACGGCCTCCAAT
GTCCTACGAAAATGTCGGATGAAAGCTTTCTAGACCAT

BS07657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-RB 1593 CG10209-PB 1..1506 17..1522 7530 100 Plus
CG10209-RA 1506 CG10209-PA 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-RB 2024 CG10209-RB 164..1670 16..1522 7535 100 Plus
CG10209-RA 2024 CG10209-RA 164..1670 16..1522 7535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14846418..14847766 1522..174 6745 100 Minus
2R 25286936 2R 14847816..14847972 175..19 785 100 Minus
Blast to na_te.dros performed 2014-11-28 00:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..7057 1133..1441 203 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6683..7018 1119..1462 194 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2549 1193..1404 190 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6985 1193..1455 189 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2664 1093..1457 186 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6705..7042 1116..1456 175 55.1 Plus
roo 9092 roo DM_ROO 9092bp 1056..1176 403..515 161 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2652 1404..1460 150 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6775..6872 407..502 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2396 422..504 137 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6828 422..495 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2450 407..516 133 60.4 Plus
roo 9092 roo DM_ROO 9092bp 1057..1147 1129..1216 133 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2780..2950 415..582 128 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2445..2526 422..502 128 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6803 421..502 124 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2387 439..516 124 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2535 1014..1232 121 54.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2720..2835 392..502 116 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2832 421..485 116 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6901 411..504 116 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1587 422..485 113 64.1 Plus

BS07657.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:49 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..1506 17..1522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:40 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 153..1663 12..1522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:21 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 165..1669 17..1521 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:50 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 153..1663 12..1522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:15 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 165..1669 17..1521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:15 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14846419..14847764 176..1521 100 <- Minus
2R 14847816..14847973 17..175 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:21 Download gff for BS07657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10733924..10735269 176..1521 100 <- Minus
arm_2R 10735321..10735478 17..175 99   Minus

BS07657.pep Sequence

Translation from 16 to 1521

> BS07657.pep
MDRVTKPQKKMLITLLRETKYMEGKKEKEWYWEKIQAALNTIGPKKTIIQ
WKKCWRDMRLTTRKKLAELKRCQLSGGSPPPGIELNQEDNDIIDIVGTEY
FYEEMNGELKAENFLTGLDYAPEHLCDAILTAAVGHHQHNMQHQKDPQSH
AGQQQQQDHHTNDGETNDAPGSSNGGSYQGHPVSQLQAHNGSGGGGEHSG
GGQSHSGMLQHPAFHGGLHPHLLRRQHGSGSLSRESPFEEKLLQFMQDAF
PKKSKKRKNRDPDKLFLLSLYEEIKRVPEEIRLDVKSELMQILKKYQKKS
PVKAEKPAPSSTSTSSKLSSSSSGSSTVTTHLSHSMYQLQKKYEKGEREP
SPQSQVERVASAGAVAVPIHTSQQLPLFQLQKKYEENSVEKVHQQQQQQQ
SEQRKHVEAAQALHAAHQQPPPPPPNEHLHHPQMAHNIMFPLGQLRNEQP
TAQQHQHGHNPHQQQQQHPHQQQQQGQQHHPPTIFGSTASERPPMSYENV
G*

BS07657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-PB 530 CG10209-PB 1..501 1..501 2685 100 Plus
CG10209-PA 501 CG10209-PA 1..501 1..501 2685 100 Plus
CG43347-PD 2652 CG43347-PD 1469..1608 346..482 165 37 Plus
CG43347-PB 2666 CG43347-PB 1483..1622 346..482 165 37 Plus
CG43347-PC 2684 CG43347-PC 1501..1640 346..482 165 37 Plus