Clone BS07659 Report

Search the DGRC for BS07659

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG7720-RA
Protein status:BS07659.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07659.3prime Sequence

826 bp (783 high quality bases) assembled on 2006-01-06

> BS07659.3prime
ATGGTCTAGAAAGCTTTCAGAGCGCAGATCGCCCGGCCAGTTGGCGATAC
ACTCCCGTTTCGCCCTCGCCCGGCACAATGTCCAATTGGATCCTACTGCT
GTCGCATATCGACTGCTGATCCCCTGCTGATCCCGTTCCCTCGGAGGTGG
TGAATACCACGGCGATGGGACTGCTCTTCTCCTTGTCCTCCGGCGAGGAC
TCGTAGCCGTGATTCACCTTCTCCGCCTTGCATGTGGTTGTCGTGGCCGA
GGAGTCACTGCTGCTCCGCCCATTCAGTCCGGACTCCTCCTCGTGCTTCA
CGTAGTACGGCTTTCGGCCGGAGAAACGCTCGCACAGCCGAAAGATCAAC
GGATGCAGCAGCTTGCCGTCGTAGGCGTCATCCGGATGCTGAGTCAGCAA
GCTGATCACTGTGCCAATGATCACGGTCAGTGCCGTGCCAATTAAACTGT
AGTACATGAAGCTGATCGAGTAGAAGGTCTCCAGTCCGGATCTTTCAGGT
GCAATTGTGGGCTGTGTGGGCACAAAGCTCTGGTTGAAACCATCAATAGG
CGTGTGCGACAACAGCCAGGGCATCTGTCCCTGTTCCACGATGGGCTTGC
CAATGGACTGCGCGAAGGTATCGTTGGTGCAGCCATCTGTGGAGGTGGGC
AGCAGGGGATTGTCCTTGGTAACGGTCATGCCACCGCCAATGATCCAAAG
CACAAAGGCGCAGGCGGTGACCATGCCGGCGGAGGTGCCCTTCCAATTCG
CAATCGGAACCATCATGGCCAGGATGAAGCAACCCAACAAAGGACCCGAT
GTGGCCGAGAACACCAGCAGCGAGGA

BS07659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-PB 2046 CG7720-RB 1237..2046 826..17 4050 100 Minus
CG7720-PA 2046 CG7720-RA 1237..2046 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-RF 2471 CG7720-RF 1430..2239 826..17 4050 100 Minus
CG7720-RE 2607 CG7720-RE 1566..2375 826..17 4050 100 Minus
CG7720-RD 2758 CG7720-RD 1717..2526 826..17 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18759468..18759944 17..493 2385 100 Plus
3R 32079331 3R 18760264..18760456 634..826 965 100 Plus
3R 32079331 3R 18760056..18760198 492..634 715 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:35:10 has no hits.

BS07659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:36 Download gff for BS07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-PB 1238..2046 17..825 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:06 Download gff for BS07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-PA 1238..2046 17..825 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:08 Download gff for BS07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 1718..2531 11..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:37 Download gff for BS07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 1718..2531 11..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:37 Download gff for BS07659.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18759463..18759942 11..491 99 <- Plus
3R 18760056..18760198 492..634 100 <- Plus
3R 18760265..18760455 635..825 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:08 Download gff for BS07659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14585185..14585664 11..491 99 <- Plus
arm_3R 14585778..14585920 492..634 100 <- Plus
arm_3R 14585987..14586177 635..825 100   Plus

BS07659.5prime Sequence

974 bp (793 high quality bases) assembled on 2006-01-06

> BS07659.5prime
GAAGTTATCAGTCGACATGGCCAAGGACTTGAGCACTATGGGATGGGATT
ATCTGATGTTTGTACTGTTTATAGCCCTCACCGTTTTGGGCCCGTTGTGG
AAACGCATTTTTGGCAAAAAGAAGGAGCGCAGCAAGGCCGACTATGTTTT
TGCCACCGGCGGAGTTTCGATAGTGGCAGTCATGATTTCCATTGCCCGAG
GAACCTTGGGAGTGAGATCCGTGCTAGGCTATCCCAGTGAATTGTACTAC
CGCGGATCGGCCATGTGGGAGATCATCTACGGCATGATGAGCGCCTATCC
CATCGTTTGCTTCATGTTCGTGCCCGTGTACTTTAATCTGGGCATCACCT
CCGTCTATCAGTACATCGATCTCAGGTTCAAGAGCCGCACGGTGAGATGC
CTGGCATCGGCGACATATATCGTGCGGCAGATCTGCAACCTTGGCATCAC
CGTGTACACTCCCAGCGTGGCCCTCTCGACGGTGATTGGCATACCCTACT
GGGCCTCCATTACGGGCATGGCCGTCATTTGCATATTCTTCACCATTATG
GGCGGCCTGAAGGCGGCTATCAACGCGGACGTCATCCAGACAGTGACCAT
TCTGGTTGTCACTGTGGCGGTTTGTATCCAGGGAACTATCTCTACGGGCG
GCGTGAAGAAGGTTTACCAACTAAATCGGGACAATGGACGTCTCAACTTT
TGGAACTTCACGGGCGATATGACTGTCAGAGTGGATACCACATCGGCTTG
GCTGGGCCAACTGTTCATGTCCCTCTCCCAGATCGGCTGTCAGCAGAACT
TTATGCAGCGTTATGTCAGCCTTCAGTCGCTCAAGCAAGTGCGTCGAGTT
ATGCTGACCAATGTGCCTTTTGGTCTTCTTCTTTCTTTTCCATCTCTGNA
TCTCTGGCATGGTCATCTATTCCACGTACATCAACTGCGATCCCTACGCC
GAGGGCTACATTAAAAACCCGATG

BS07659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-PB 2046 CG7720-RB 1..854 17..870 4220 99.7 Plus
CG7720-PA 2046 CG7720-RA 1..854 17..870 4220 99.7 Plus
CG7720-PB 2046 CG7720-RB 879..947 896..964 326 98.5 Plus
CG7720-PA 2046 CG7720-RA 879..947 896..964 326 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-RF 2471 CG7720-RF 192..1151 15..974 4669 99.3 Plus
CG7720-RE 2607 CG7720-RE 328..1287 15..974 4669 99.3 Plus
CG7720-RD 2758 CG7720-RD 479..1438 15..974 4669 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18768871..18769084 228..15 1070 100 Minus
3R 32079331 3R 18761831..18762008 551..374 890 100 Minus
3R 32079331 3R 18760995..18761155 846..686 775 98.8 Minus
3R 32079331 3R 18768658..18768809 377..226 760 100 Minus
3R 32079331 3R 18761601..18761738 687..550 690 100 Minus
3R 32079331 3R 18760790..18760918 974..846 444 96.2 Minus
Blast to na_te.dros performed on 2015-02-11 13:06:48 has no hits.

BS07659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:37 Download gff for BS07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-PB 1..958 17..974 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:07 Download gff for BS07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-PA 1..958 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:16 Download gff for BS07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 469..1438 3..974 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:17 Download gff for BS07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 469..1438 3..974 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:17 Download gff for BS07659.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18768872..18769094 3..227 97   Minus
3R 18760790..18760917 847..974 96 <- Minus
3R 18760995..18761154 687..846 98 <- Minus
3R 18761602..18761737 551..686 100 <- Minus
3R 18761832..18762006 376..550 100 <- Minus
3R 18768660..18768807 228..375 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:16 Download gff for BS07659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14587324..14587459 551..686 100 <- Minus
arm_3R 14586512..14586639 847..974 96 <- Minus
arm_3R 14586717..14586876 687..846 98 <- Minus
arm_3R 14587554..14587728 376..550 100 <- Minus
arm_3R 14594382..14594529 228..375 100 <- Minus
arm_3R 14594594..14594816 3..227 97   Minus

BS07659.complete Sequence

2078 bp assembled on 2008-01-03

GenBank Submission: FJ635940

> BS07659.complete
GAAGTTATCAGTCGACATGGCCAAGGACTTGAGCACTATGGGATGGGATT
ATCTGATGTTTGTACTGTTTATAGCCCTCACCGTTTTGGGCCCGTTGTGG
AAACGCATTTTTGGCAAAAAGAAGGAGCGCAGCAAGGCCGACTATGTTTT
TGCCACCGGCGGAGTTTCGATAGTGGCAGTCATGATTTCCATTGCCCGAG
GAACCTTGGGAGTGAGATCCGTGCTAGGCTATCCCAGTGAATTGTACTAC
CGCGGATCGGCCATGTGGGAGATCATCTACGGCATGATGAGCGCCTATCC
CATCGTTTGCTTCATGTTCGTGCCCGTGTACTTTAATCTGGGCATCACCT
CCGTCTATCAGTACATCGATCTCAGGTTCAAGAGCCGCACGGTGAGATGC
CTGGCATCGGCGACATATATCGTGCGGCAGATCTGCAACCTTGGCATCAC
CGTGTACACTCCCAGCGTGGCCCTCTCGACGGTGATTGGCATACCCTACT
GGGCCTCCATTACGGGCATGGCCGTCATTTGCATATTCTTCACCATTATG
GGCGGCCTGAAGGCGGCTATCAACGCGGACGTCATCCAGACAGTGACCAT
TCTGGTTGTCACTGTGGCGGTTTGTATCCAGGGAACTATCTCTACGGGCG
GCGTGAAGAAGGTTTACCAACTAAATCGGGACAATGGACGTCTCAACTTT
TGGAACTTCACGGGCGATATGACTGTCAGAGTGGATACCACATCGGCTTG
GCTGGGCCAACTGTTCATGTCCCTCTCCCAGATCGGCTGTCAGCAGAACT
TTATGCAGCGTTATGTCAGCCTCAAGTCGCTCAAGCAAGTGCGTCGAGTT
ATGCTGACCAATGTGCCTTTGGTCTTCTTCTTCTTTTCCATCTCCTGGAT
CTCTGGCATGGTCATCTATTCCACGTACATCAACTGCGATCCCTACGCCG
AGGGCTACATTAAGAAACCCGATGAGATTCTGCCATTCTTTGTGGAGGAT
CAGCTCGGTTTTCTGCCCGGTTTCGTGGGCATTTTCATGGCCACTCTGTT
CAATGGCGCCCTTTGCATGATGGTGTCGAATCTGAATTCATTGGCAACGG
TTATTTGGGAGGACTTCATCTCACAGTTGCCGAAATTCAAGGGACTCTCC
GACAAACAGCAGCTACGAATTCTGAAGTCGATCACTGTCGTCTGTGGACT
GATTATTATGGGCGTGGCCTTTGGAGTTGGTCTGCTGGCGGGCGTTATTG
AGTCCTCGCTGCTGGTGTTCTCGGCCACATCGGGTCCTTTGTTGGGTTGC
TTCATCCTGGCCATGATGGTTCCGATTGCGAATTGGAAGGGCACCTCCGC
CGGCATGGTCACCGCCTGCGCCTTTGTGCTTTGGATCATTGGCGGTGGCA
TGACCGTTACCAAGGACAATCCCCTGCTGCCCACCTCCACAGATGGCTGC
ACCAACGATACCTTCGCGCAGTCCATTGGCAAGCCCATCGTGGAACAGGG
ACAGATGCCCTGGCTGTTGTCGCACACGCCTATTGATGGTTTCAACCAGA
GCTTTGTGCCCACACAGCCCACAATTGCACCTGAAAGATCCGGACTGGAG
ACCTTCTACTCGATCAGCTTCATGTACTACAGTTTAATTGGCACGGCACT
GACCGTGATCATTGGCACAGTGATCAGCTTGCTGACTCAGCATCCGGATG
ACGCCTACGACGGCAAGCTGCTGCATCCGTTGATCTTTCGGCTGTGCGAG
CGTTTCTCCGGCCGAAAGCCGTACTACGTGAAGCACGAGGAGGAGTCCGG
ACTGAATGGGCGGAGCAGCAGTGACTCCTCGGCCACGACAACCACATGCA
AGGCGGAGAAGGTGAATCACGGCTACGAGTCCTCGCCGGAGGACAAGGAG
AAGAGCAGTCCCATCGCCGTGGTATTCACCACCTCCGAGGGAACGGGATC
AGCAGGGGATCAGCAGTCGATATGCGACAGCAGTAGGATCCAATTGGACA
TTGTGCCGGGCGAGGGCGAAACGGGAGTGTATCGCCAACTGGCCGGGCGA
TCTGCGCTCTGAAAGCTTTCTAGACCAT

BS07659.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-RF 2046 CG7720-PF 1..2046 17..2062 10230 100 Plus
CG7720-RE 2046 CG7720-PE 1..2046 17..2062 10230 100 Plus
CG7720-RD 2046 CG7720-PD 1..2046 17..2062 10230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-RF 2471 CG7720-RF 192..2239 15..2062 10240 100 Plus
CG7720-RE 2607 CG7720-RE 328..2375 15..2062 10240 100 Plus
CG7720-RD 2758 CG7720-RD 479..2526 15..2062 10240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18759468..18759944 2062..1586 2385 100 Minus
3R 32079331 3R 18760264..18760644 1445..1065 1905 100 Minus
3R 32079331 3R 18760699..18760918 1065..846 1100 100 Minus
3R 32079331 3R 18768871..18769084 228..15 1070 100 Minus
3R 32079331 3R 18761831..18762008 551..374 890 100 Minus
3R 32079331 3R 18760995..18761155 846..686 805 100 Minus
3R 32079331 3R 18768658..18768809 377..226 760 100 Minus
3R 32079331 3R 18760056..18760198 1587..1445 715 100 Minus
3R 32079331 3R 18761601..18761738 687..550 690 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:15:02 has no hits.

BS07659.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:56 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG7720-RA 1..2046 17..2062 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:29 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG7720-RA 148..2192 17..2061 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:04 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 481..2525 17..2061 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:56 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG7720-RA 136..2198 3..2068 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:44 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 481..2525 17..2061 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:44 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18768872..18769082 17..227 100   Minus
3R 18759469..18759942 1588..2061 100 <- Minus
3R 18760056..18760198 1445..1587 100 <- Minus
3R 18760265..18760643 1066..1444 100 <- Minus
3R 18760699..18760917 847..1065 100 <- Minus
3R 18760995..18761154 687..846 100 <- Minus
3R 18761602..18761737 551..686 100 <- Minus
3R 18761832..18762006 376..550 100 <- Minus
3R 18768660..18768807 228..375 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:04 Download gff for BS07659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14594594..14594804 17..227 100   Minus
arm_3R 14585191..14585664 1588..2061 100 <- Minus
arm_3R 14585778..14585920 1445..1587 100 <- Minus
arm_3R 14585987..14586365 1066..1444 100 <- Minus
arm_3R 14586421..14586639 847..1065 100 <- Minus
arm_3R 14586717..14586876 687..846 100 <- Minus
arm_3R 14587324..14587459 551..686 100 <- Minus
arm_3R 14587554..14587728 376..550 100 <- Minus
arm_3R 14594382..14594529 228..375 100 <- Minus

BS07659.pep Sequence

Translation from 16 to 2061

> BS07659.pep
MAKDLSTMGWDYLMFVLFIALTVLGPLWKRIFGKKKERSKADYVFATGGV
SIVAVMISIARGTLGVRSVLGYPSELYYRGSAMWEIIYGMMSAYPIVCFM
FVPVYFNLGITSVYQYIDLRFKSRTVRCLASATYIVRQICNLGITVYTPS
VALSTVIGIPYWASITGMAVICIFFTIMGGLKAAINADVIQTVTILVVTV
AVCIQGTISTGGVKKVYQLNRDNGRLNFWNFTGDMTVRVDTTSAWLGQLF
MSLSQIGCQQNFMQRYVSLKSLKQVRRVMLTNVPLVFFFFSISWISGMVI
YSTYINCDPYAEGYIKKPDEILPFFVEDQLGFLPGFVGIFMATLFNGALC
MMVSNLNSLATVIWEDFISQLPKFKGLSDKQQLRILKSITVVCGLIIMGV
AFGVGLLAGVIESSLLVFSATSGPLLGCFILAMMVPIANWKGTSAGMVTA
CAFVLWIIGGGMTVTKDNPLLPTSTDGCTNDTFAQSIGKPIVEQGQMPWL
LSHTPIDGFNQSFVPTQPTIAPERSGLETFYSISFMYYSLIGTALTVIIG
TVISLLTQHPDDAYDGKLLHPLIFRLCERFSGRKPYYVKHEEESGLNGRS
SSDSSATTTTCKAEKVNHGYESSPEDKEKSSPIAVVFTTSEGTGSAGDQQ
SICDSSRIQLDIVPGEGETGVYRQLAGRSAL*

BS07659.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-PF 681 CG7720-PF 1..681 1..681 3522 100 Plus
CG7720-PE 681 CG7720-PE 1..681 1..681 3522 100 Plus
CG7720-PD 681 CG7720-PD 1..681 1..681 3522 100 Plus
CG7720-PC 681 CG7720-PC 1..681 1..681 3522 100 Plus
CG7720-PA 681 CG7720-PA 1..681 1..681 3522 100 Plus