Clone BS07661 Report

Search the DGRC for BS07661

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG13325-RA
Protein status:BS07661.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07661.3prime Sequence

890 bp (888 high quality bases) assembled on 2006-01-06

> BS07661.3prime
ATGGTCTAGAAAGCTTCTAATCTACAGTTGAAGTTGTAGGTTCCAGCAGA
TTTTCTGGGTCCCTAGGCTCCTTATCATCAATATGAGATGTCTGTTTTTC
GGTAGGAGAGATCTTTCCCTTTGGCCTTAGGAAAATGTCAAGTCCGCCAA
TTGGTGCCTCAATGAGCAGATGCATTGCATAGGAAAACAGCAAGGTGAAC
CCTAGGGTCGACCAGAAGTTAAGCATCATTCCGTAATCCGAGAAGTATGT
GCTAGTCCTGGTACTCCGTGCGTTCATCTCCATGAAGAACATGTGCCATA
TAAAAACAGAATACGAAAGCCTGGAGAGTGGTTGCCATAGCGGAGAGGCG
AGGAAACTATTGGCCAGTCCTCCGTATCCCTGAACGCAGGCAAAGATCAC
CCAGCAAAGGGCCAAAGCCCAGCCCACTCTGGTTAAAGTGTAGTAAAAAG
ACTCCGCCAAGGTGGACGCGTCAGGATCAGACCACTTGGACGGCGGATAC
AGGGCAAAGATCGATGTAAAGATCATGGCCAGGCAGAGGATCCATCCTGA
CCACACGGACACCCAGCTAAGCTGGAACTTCTTCCCTCTGTTCAGATGCA
GGAAGTATCCGAAGAGGAATCCTATAAGCCAGGGTGTAGCATGTGTATGG
GTTGCATAGTACCCATCTCGCATGGCTTCTGGAGAGGCAGCCGTGATCAT
CATTGAATATCCGTTCACCATCATGGTGGCAAATAGACAGGCGGAAAGTA
AAATTATGAGAATGAAGATACCAGCAGCTGCTTTCTTGCCCCATTTGTAG
AGGGAGATCAACAGGATCGGCGAGATGATGTACAGCTGCATGTCCAGCGA
CAGATACCAGGATTGAGCTAGGCACTTGGCATCTGTGTAG

BS07661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-PA 2094 CG13325-RA 1221..2094 890..17 4370 100 Minus
CG10182-PA 2100 CG10182-RA 1560..1613 554..501 195 94.4 Minus
CG10182-PA 2100 CG10182-RA 1735..1790 379..324 155 91 Minus
CG14204-PA 2232 CG14204-RA 1307..1370 846..783 145 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2415 CG13325-RD 1244..2117 890..17 4370 100 Minus
CG13325-RC 2181 CG13325-RC 1244..2117 890..17 4370 100 Minus
CG13325-RB 3610 CG13325-RB 2673..3546 890..17 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13124987..13125452 692..227 2330 100 Minus
2R 25286936 2R 13125506..13125716 227..17 1055 100 Minus
2R 25286936 2R 13124745..13124929 876..692 925 100 Minus
3R 32079331 3R 23587545..23587917 284..656 725 79.6 Plus
3R 32079331 3R 23596858..23597242 272..656 500 75.3 Plus
3R 32079331 3R 23593982..23594325 288..631 385 74.1 Plus
3R 32079331 3R 23588033..23588179 713..859 375 83.7 Plus
X 23542271 X 19585478..19585625 861..714 290 79.7 Minus
3R 32079331 3R 23590995..23591158 713..876 280 78 Plus
3R 32079331 3R 23590519..23590673 292..446 220 76.1 Plus
3R 32079331 3R 23594532..23594611 767..846 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-11 16:07:46 has no hits.

BS07661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:38 Download gff for BS07661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1221..2094 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:09 Download gff for BS07661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1221..2094 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:48 Download gff for BS07661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 1995..2868 17..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:25 Download gff for BS07661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RB 2673..3546 17..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:25 Download gff for BS07661.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13125507..13125716 17..226 100   Minus
2R 13124665..13124680 875..890 100 -> Minus
2R 13124747..13124928 693..874 100 -> Minus
2R 13124987..13125452 227..692 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:48 Download gff for BS07661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9012170..9012185 875..890 100 -> Minus
arm_2R 9012252..9012433 693..874 100 -> Minus
arm_2R 9012492..9012957 227..692 100 -> Minus
arm_2R 9013012..9013221 17..226 100   Minus

BS07661.5prime Sequence

914 bp (808 high quality bases) assembled on 2006-01-06

> BS07661.5prime
GAAGTTATCAGTCGACATGACGAACCAAGTGATAGTATTTCTACTGTGCG
GTTTTGTGATCATCAGTGCCGGGAATCCAAATAGTGACGATGTGTTACCG
CAGTTTCGGAATGTCAGGCAACTTAGGTCCTTGGGCATCGAATTTACCGA
ATACTTTCGAAATATTTCCACGCAAGATTTAGGCGGCTTGGAGTCCCAGT
TTTCGAGTGAAGATGATCTGCTGTGCCTCAACGATATGAAGGCGCTGATG
ACAGGACTTGGAAGTGCTGAGTACTGGGCGTTGAAAATGATCGATGCCTG
GGGGTCCATTCCATCGGGACTACTCGCCGGTAATTCGTATGACCTGGGCA
ACTTTGACGAGTGTCTGAACATCAGAAAGGAGATCGGCCAGGAGAGAACT
ATTCAAGGAAAGTACTGCTTCCTCTCGGTATCCCCTGCCAAAATCCTGGG
GATCGAAACAAGCATAGGTAGCTTCAGAACTGCCACTTGCTTTCCTGCAT
CCTGCTCGGCGATCAACATGAATGCGTTTGTGGATCAATTGATGATGAAG
TTACTCAATGTCAGTGTTCCAAGTTCAGCCATGAGAATCAGTGAAGGCAG
CTGTCAGACCAGTGATAGTGAGCCCTGGGATGCCCTCACCATTTTTATGA
TAGTTATTTTATCCTTAATGAGTTTCATAGTGGCATTATCTACTCTGTGG
GACTACTTTCTAGTCAAAGATCAGGATCAGCTTCCGGCCATTGTGAAGAT
CTGTTCAGCCCGGTCCAATTCTCGAGCCCTATTTCGCGTTGTAGAAAGCC
ATTCGAATCCGAATGTAATCGACTGCCTTCATGGAATTCGCTGCATGTCC
CTGATTTGGGTGAATACATGCCATCAGTACTCAGTCACTCTTTATTTCGC
ACACATCATTTTGT

BS07661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-PA 2094 CG13325-RA 1..876 17..892 4355 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2415 CG13325-RD 23..921 16..914 4420 99.6 Plus
CG13325-RC 2181 CG13325-RC 23..921 16..914 4420 99.6 Plus
CG13325-RB 3610 CG13325-RB 1452..2350 16..914 4420 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13123495..13123858 288..651 1820 100 Plus
2R 25286936 2R 13123160..13123431 16..287 1360 100 Plus
2R 25286936 2R 13124042..13124231 725..914 845 96.3 Plus
2R 25286936 2R 13123910..13123983 652..725 370 100 Plus
3R 32079331 3R 23591754..23591862 862..754 215 79.8 Minus
3R 32079331 3R 23588771..23588904 861..728 205 76.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:15:24 has no hits.

BS07661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:39 Download gff for BS07661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:10 Download gff for BS07661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:04:46 Download gff for BS07661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 771..1672 9..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:28 Download gff for BS07661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RB 1449..2350 9..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:28 Download gff for BS07661.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13123157..13123431 9..287 98 -> Plus
2R 13123495..13123858 288..651 100 -> Plus
2R 13123910..13123983 652..725 100 -> Plus
2R 13124043..13124231 726..914 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:04:46 Download gff for BS07661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9010662..9010936 9..287 98 -> Plus
arm_2R 9011000..9011363 288..651 100 -> Plus
arm_2R 9011415..9011488 652..725 100 -> Plus
arm_2R 9011548..9011736 726..914 97   Plus

BS07661.complete Sequence

2126 bp assembled on 2008-01-03

GenBank Submission: FJ635941

> BS07661.complete
GAAGTTATCAGTCGACATGACGAACCAAGTGATAGTATTTCTACTGTGCG
GTTTTGTGATCATCAGTGCCGGGAATCCAAATAGTGACGATGTGTTACCG
CAGTTTCGGAATGTCAGGCAACTTAGGTCCTTGGGCATCGAATTTACCGA
ATACTTTCGAAATATTTCCACGCAAGATTTAGGCGGCTTGGAGTCCCAGT
TTTCGAGTGAAGATGATCTGCTGTGCCTCAACGATATGAAGGCGCTGATG
ACAGGACTTGGAAGTGCTGAGTACTGGGCGTTGAAAATGATCGATGCCTG
GGGGTCCATTCCATCGGGACTACTCGCCGGTAATTCGTATGACCTGGGCA
ACTTTGACGAGTGTCTGAACATCAGAAAGGAGATCGGCCAGGAGAGAACT
ATTCAAGGAAAGTACTGCTTCCTCTCGGTATCCCCTGCCAAAATCCTGGG
GATCGAAACAAGCATAGGTAGCTTCAGAACTGCCACTTGCTTTCCTGCAT
CCTGCTCGGCGATCAACATGAATGCGTTTGTGGATCAATTGATGATGAAG
TTACTCAATGTCAGTGTTCCAAGTTCAGCCATGAGAATCAGTGAAGGCAG
CTGTCAGACCAGTGATAGTGAGCCCTGGGATGCCCTCACCATTTTTATGA
TAGTTATTTTATCCTTAATGAGTTTCATAGTGGCATTATCTACTCTGTGG
GACTACTTTCTAGTCAAAGATCAGGATCAGCTTCCGGCCATTGTGAAGAT
CTGTTCAGCCCGGTCCAATTCTCGAGCCCTATTTCGCGTTGTAGAAAGCC
ATTCGAATCCGAATGTAATCGACTGCCTTCATGGAATTCGCTGCATGTCC
CTGATTTGGGTGATTACATGCCATCAGTACTCAGTCACTCTTATTTCGCC
ACACATCAATTTGTTCCGTGCCGCAACGTGGGTGGAAAAACCATTTGCCA
GTTTTATTCTGCATGGCTTCATATCCGTGGACTCGTTTCTAGTGATTGGC
GGCTTGTTAGTGGCACTGATTCCATTGCGATTAATGGATAAGACCAAAGG
CAAACTTAATGTGCCAATGATGTATTTACATCGCTTAATACGCATCGCTC
CACTTCTGGCAATGGCCATAGTGGTCCACATGAAGCTGATGCCCTTGATA
TCAAGTGGGCCACTCTTTGTAGGTGGTTATATAGGTAATTCGGCTTGCAA
GGCTGGTTGGTATTGGACTTTGCTCTTCGTGAATAACTACACAGATGCCA
AGTGCCTAGCTCAATCCTGGTATCTGTCGCTGGACATGCAGCTGTACATC
ATCTCGCCGATCCTGTTGATCTCCCTCTACAAATGGGGCAAGAAAGCAGC
TGCTGGTATCTTCATTCTCATAATTTTACTTTCCGCCTGTCTATTTGCCA
CCATGATGGTGAACGGATATTCAATGATGATCACGGCTGCCTCTCCAGAA
GCCATGCGAGATGGGTACTATGCAACCCATACACATGCTACACCCTGGCT
TATAGGATTCCTCTTCGGATACTTCCTGCATCTGAACAGAGGGAAGAAGT
TCCAGCTTAGCTGGGTGTCCGTGTGGTCAGGATGGATCCTCTGCCTGGCC
ATGATCTTTACATCGATCTTTGCCCTGTATCCGCCGTCCAAGTGGTCTGA
TCCTGACGCGTCCACCTTGGCGGAGTCTTTTTACTACACTTTAACCAGAG
TGGGCTGGGCTTTGGCCCTTTGCTGGGTGATCTTTGCCTGCGTTCAGGGA
TACGGAGGACTGGCCAATAGTTTCCTCGCCTCTCCGCTATGGCAACCACT
CTCCAGGCTTTCGTATTCTGTTTTTATATGGCACATGTTCTTCATGGAGA
TGAACGCACGGAGTACCAGGACTAGCACATACTTCTCGGATTACGGAATG
ATGCTTAACTTCTGGTCGACCCTAGGGTTCACCTTGCTGTTTTCCTATGC
AATGCATCTGCTCATTGAGGCACCAATTGGCGGACTTGACATTTTCCTAA
GGCCAAAGGGAAAGATCTCTCCTACCGAAAAACAGACATCTCATATTGAT
GATAAGGAGCCTAGGGACCCAGAAAATCTGCTGGAACCTACAACTTCAAC
TGTAGATTAGAAGCTTTCTAGACCAT

BS07661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2094 CG13325-PD 1..2094 17..2110 10470 100 Plus
CG13325-RC 2094 CG13325-PC 1..2094 17..2110 10470 100 Plus
CG13325-RB 2094 CG13325-PB 1..2094 17..2110 10470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2415 CG13325-RD 23..2117 16..2110 10475 100 Plus
CG13325-RC 2181 CG13325-RC 23..2117 16..2110 10475 100 Plus
CG13325-RB 3610 CG13325-RB 1452..3546 16..2110 10475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13124987..13125452 1435..1900 2330 100 Plus
2R 25286936 2R 13123495..13123858 288..651 1820 100 Plus
2R 25286936 2R 13123160..13123431 16..287 1360 100 Plus
2R 25286936 2R 13125506..13125716 1900..2110 1055 100 Plus
2R 25286936 2R 13124470..13124680 1042..1252 1055 100 Plus
2R 25286936 2R 13124042..13124245 725..928 1020 100 Plus
2R 25286936 2R 13124745..13124929 1251..1435 925 100 Plus
3R 32079331 3R 23587545..23587917 1843..1471 725 79.6 Minus
2R 25286936 2R 13124301..13124415 928..1042 575 100 Plus
3R 32079331 3R 23596858..23597242 1855..1471 500 75.3 Minus
3R 32079331 3R 23593982..23594325 1839..1496 385 74.1 Minus
3R 32079331 3R 23588033..23588179 1414..1268 375 83.7 Minus
2R 25286936 2R 13123910..13123983 652..725 370 100 Plus
X 23542271 X 19585478..19585625 1266..1413 290 79.7 Plus
3R 32079331 3R 23590995..23591158 1414..1251 280 78 Minus
X 23542271 X 19588286..19588397 1362..1251 245 81.2 Minus
3R 32079331 3R 23590519..23590673 1835..1681 220 76.1 Minus
3R 32079331 3R 23591754..23591862 862..754 215 79.8 Minus
3R 32079331 3R 23588263..23588462 1242..1043 205 73.5 Minus
3R 32079331 3R 23588526..23588638 1040..928 205 78.8 Minus
3R 32079331 3R 23588771..23588904 861..728 205 76.9 Minus
3R 32079331 3R 23594532..23594611 1360..1281 205 83.8 Minus
X 23542271 X 19587794..19587891 1818..1721 205 80.6 Minus
X 23542271 X 19594927..19595015 1721..1809 190 80.9 Plus
X 23542271 X 19594363..19594456 1251..1344 185 79.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:49:15 has no hits.

BS07661.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:58 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 1..2094 17..2110 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:39 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 775..2868 17..2110 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:48 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 775..2868 17..2110 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:58 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 771..2868 9..2110 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:56 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RB 1453..3546 17..2110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:56 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13124470..13124680 1042..1252 100 -> Plus
2R 13124747..13124928 1253..1434 100 -> Plus
2R 13123161..13123431 17..287 100 -> Plus
2R 13123495..13123858 288..651 100 -> Plus
2R 13123910..13123983 652..725 100 -> Plus
2R 13124043..13124245 726..928 100 -> Plus
2R 13124302..13124414 929..1041 100 -> Plus
2R 13124987..13125452 1435..1900 100 -> Plus
2R 13125507..13125716 1901..2110 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:48 Download gff for BS07661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9011807..9011919 929..1041 100 -> Plus
arm_2R 9010666..9010936 17..287 100 -> Plus
arm_2R 9011000..9011363 288..651 100 -> Plus
arm_2R 9011415..9011488 652..725 100 -> Plus
arm_2R 9011548..9011750 726..928 100 -> Plus
arm_2R 9011975..9012185 1042..1252 100 -> Plus
arm_2R 9012252..9012433 1253..1434 100 -> Plus
arm_2R 9012492..9012957 1435..1900 100 -> Plus
arm_2R 9013012..9013221 1901..2110 100   Plus

BS07661.pep Sequence

Translation from 16 to 2109

> BS07661.pep
MTNQVIVFLLCGFVIISAGNPNSDDVLPQFRNVRQLRSLGIEFTEYFRNI
STQDLGGLESQFSSEDDLLCLNDMKALMTGLGSAEYWALKMIDAWGSIPS
GLLAGNSYDLGNFDECLNIRKEIGQERTIQGKYCFLSVSPAKILGIETSI
GSFRTATCFPASCSAINMNAFVDQLMMKLLNVSVPSSAMRISEGSCQTSD
SEPWDALTIFMIVILSLMSFIVALSTLWDYFLVKDQDQLPAIVKICSARS
NSRALFRVVESHSNPNVIDCLHGIRCMSLIWVITCHQYSVTLISPHINLF
RAATWVEKPFASFILHGFISVDSFLVIGGLLVALIPLRLMDKTKGKLNVP
MMYLHRLIRIAPLLAMAIVVHMKLMPLISSGPLFVGGYIGNSACKAGWYW
TLLFVNNYTDAKCLAQSWYLSLDMQLYIISPILLISLYKWGKKAAAGIFI
LIILLSACLFATMMVNGYSMMITAASPEAMRDGYYATHTHATPWLIGFLF
GYFLHLNRGKKFQLSWVSVWSGWILCLAMIFTSIFALYPPSKWSDPDAST
LAESFYYTLTRVGWALALCWVIFACVQGYGGLANSFLASPLWQPLSRLSY
SVFIWHMFFMEMNARSTRTSTYFSDYGMMLNFWSTLGFTLLFSYAMHLLI
EAPIGGLDIFLRPKGKISPTEKQTSHIDDKEPRDPENLLEPTTSTVD*

BS07661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-PD 697 CG13325-PD 1..697 1..697 3662 100 Plus
CG13325-PC 697 CG13325-PC 1..697 1..697 3662 100 Plus
CG13325-PB 697 CG13325-PB 1..697 1..697 3662 100 Plus
CG13325-PA 697 CG13325-PA 1..697 1..697 3662 100 Plus
CG10182-PA 699 CG10182-PA 1..695 1..695 2518 67.1 Plus