Clone BS07662 Report

Search the DGRC for BS07662

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG42322-RD
Protein status:BS07662.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07662.3prime Sequence

944 bp (836 high quality bases) assembled on 2006-01-06

> BS07662.3prime
ATGGTCTAGAAAGCTTTTAGCTTATATGGTGCGTGCGCGTGATGTGCCGC
TGCGCATATCTGGTGGACGGTCCCGTGACTATAGCATCTCGTTTACAAAG
CGCTGGCCTACCGCTCGCATTGTGACCCAGCATTATGATGCTTCGCAACA
ATCGCGTTATATAGTCTGGCCAGTTGGCGGGAAACATGACGAGGAAAAAT
CCGATGCCAATCAGGATAACTCCGGCCAGTTTCATGCCAGCAAAGTTCGC
ACTGTATAGTATGACATCGAGGGCGCCAGAAACGGGCACAGCCGTAATCA
GACCCAATGTCACAAACATGTTGTACGTAACGGCGGCACTGAACTGCATC
AGAACGTGGAAAACGAGGAGCAGGAGGCTCGCCGCGAACAGCAGGTTCCA
GGGTATGCTCTCCGAGGTGAGGCTTTCCGTGCCAGTCAGGTAGAGTCCCA
GCACTACGGGCCACAGCAGCAGGGCGTTGAGGAAGCCGAGGGCGGTGAAT
ATGAAGGCGATTTGGCTCACCGGCGGATCGCCCATCACCTTGCGGAACAT
AACCCTAAACACGGCATAGCCAGCTCCAGCCAATGTGGCCAAGACCACGC
CGCTCAGGGTTCGGCTTTCCGTAATTCCATCCATATAGGCTAGCAACGCT
ATTCCTGTGTCGCAAAGTATAATGGCCACGATTCTAACGCCCACGAACTG
CTCGTGCAGGATCACCCAGGATAGCAGGTACACGCATGCCACGTTGGTGG
CGAACAGGGCCAGGGCATCCGTGGCGTAGAGGACGTGCAGGGACAGGGTG
TACAGGTAGGTGGTGACCAGCCACAAAATGCAGAAGCAGAGGCAGCGATT
GAGGAAGCGACCCACTGTGAAGCCGCGCTCCCGGAATCCTCGCAGCACGT
CGCCCAGGATGTCGCTCAGCTTCTCGCACTTGCGGTTGGAGACC

BS07662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31203-PA 1737 CG31203-RA 810..1737 944..17 4590 99.7 Minus
CG31203-PD 1737 CG31203-RD 810..1737 944..17 4590 99.7 Minus
CG31203-PE 1737 CG31203-RE 810..1737 944..17 4590 99.7 Minus
CG31203-PB 1737 CG31203-RB 810..1737 944..17 4590 99.7 Minus
CG31203-PC 1095 CG31203-RC 168..1095 944..17 4590 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RD 2049 CG42322-RD 1086..2020 944..10 4615 99.6 Minus
CG42322-RM 3269 CG42322-RM 1114..2048 944..10 4615 99.6 Minus
CG42322-RL 3534 CG42322-RL 1086..2020 944..10 4615 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20749468..20749658 554..364 955 100 Minus
3R 32079331 3R 20747836..20748015 862..683 900 100 Minus
3R 32079331 3R 20749248..20749378 682..552 655 100 Minus
3R 32079331 3R 20750224..20750354 274..144 655 100 Minus
3R 32079331 3R 20753507..20753612 115..10 500 98.1 Minus
3R 32079331 3R 20749740..20749830 364..274 455 100 Minus
3R 32079331 3R 20747690..20747774 944..860 395 97.6 Minus
Blast to na_te.dros performed on 2015-02-12 18:59:38 has no hits.

BS07662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:41 Download gff for BS07662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PD 810..1737 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:12 Download gff for BS07662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PC 168..1095 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:51:09 Download gff for BS07662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 1086..2024 4..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:20 Download gff for BS07662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 1086..2024 4..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:20 Download gff for BS07662.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20749469..20749658 364..553 100 -> Minus
3R 20749741..20749830 274..363 100 -> Minus
3R 20750225..20750354 144..273 100 -> Minus
3R 20752346..20752375 114..143 100 -> Minus
3R 20747690..20747772 862..944 97 -> Minus
3R 20753509..20753616 4..113 96   Minus
3R 20747837..20748015 683..861 100 -> Minus
3R 20749248..20749376 554..682 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:51:09 Download gff for BS07662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16573412..16573494 862..944 97 -> Minus
arm_3R 16573559..16573737 683..861 100 -> Minus
arm_3R 16574970..16575098 554..682 100 -> Minus
arm_3R 16575191..16575380 364..553 100 -> Minus
arm_3R 16575463..16575552 274..363 100 -> Minus
arm_3R 16575947..16576076 144..273 100 -> Minus
arm_3R 16578068..16578097 114..143 100 -> Minus
arm_3R 16579231..16579338 4..113 96   Minus

BS07662.5prime Sequence

952 bp (882 high quality bases) assembled on 2006-01-06

> BS07662.5prime
GAAGTTATCAGTCGACATGACGCGCGACGGCGAAATTCCAGCTATTTTCA
ATCCGAAAAGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGACTCCTCG
ACGAATGGACCGTACAGCAACAATAGCACCGGCGGGGCGGGAGCCAGCAG
CAGCACGGCAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGCAGTGGCA
GCGGAGCAGCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTCGAGCAAT
CCGCAAATAACCCACCAAGACTCGATATCGTCGAGCCAACAGGACCCCAA
TGAGGTGGTCATCATCCCGGCGGACACACCAACGAGCGCACCGGGCAGCC
ACAATGCGGCGCACCACTTCGGAGGCGGCGACTCCAGCGACACCCAGACG
GAGCAGCAGCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTCGCTTCCG
AAAGTTGCAGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCCCGGAAGA
TGTACTTCGGAGTGTGCGTGACCATCCTGATGACCGCGTCGTGGGTGGGG
GCCACCCACTGCATTAAGTACATGTACAAGTACCGTGCTCCGTACGACGA
CTTGCTGAACGACGACCAGGACACGTCCTCGAGCCGCGCGGACCTGAGCA
CGGAGCTGGAGGATATACTGGCCATCAGCGACTCGTCGCTGCACCACGTC
GAGGACGCCACCGAGATGTTCAACATACCACCGCGCCAGCCGGTCTACTT
CAGCGCCCCCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCGCTGCTCT
TCTTCCCCATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTGCGAGAAG
CTGAGCGACATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGCGCGGCTT
CACAGTGGGTCGCTTCCTCAATCGCTGCCTCTGCTTCTGCATTTTGTGGC
TG

BS07662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31203-PA 1737 CG31203-RA 1..936 17..952 4680 100 Plus
CG31203-PD 1737 CG31203-RD 1..936 17..952 4680 100 Plus
CG31203-PE 1737 CG31203-RE 1..936 17..952 4680 100 Plus
CG31203-PB 1737 CG31203-RB 1..936 17..952 4680 100 Plus
CG31203-PC 1095 CG31203-RC 46..294 704..952 1245 100 Plus
CG31203-PC 1095 CG31203-RC 1..46 17..62 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RN 3657 CG42322-RN 276..1212 16..952 4685 100 Plus
CG42322-RJ 3627 CG42322-RJ 276..1212 16..952 4685 100 Plus
CG42322-RI 3614 CG42322-RI 263..1199 16..952 4685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20746820..20747303 16..499 2420 100 Plus
3R 32079331 3R 20747362..20747774 498..910 2065 100 Plus
3R 32079331 3R 20747836..20747880 908..952 225 100 Plus
Blast to na_te.dros performed 2015-02-13 00:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 155..200 115..160 122 73.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9185..9230 115..160 122 73.9 Plus

BS07662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:42 Download gff for BS07662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PD 1..936 17..952 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:13 Download gff for BS07662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PB 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:59 Download gff for BS07662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 269..1212 7..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:46 Download gff for BS07662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RI 256..1199 7..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:46 Download gff for BS07662.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20747837..20747880 909..952 100   Plus
3R 20746813..20747303 7..499 99 -> Plus
3R 20747364..20747772 500..908 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:59 Download gff for BS07662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16572535..16573025 7..499 99 -> Plus
arm_3R 16573086..16573494 500..908 100 -> Plus
arm_3R 16573559..16573602 909..952 100   Plus

BS07662.complete Sequence

1769 bp (1769 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635942

> BS07662.complete
GAAGTTATCAGTCGACATGACGCGCGACGGCGAAATTCCAGCTATTTTCA
ATCCGAAAAGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGACTCCTCG
ACGAATGGACCGTACAGCAACAATAGCACCGGCGGGGCGGGAGCCAGCAG
CAGCACGGCAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGCAGTGGCA
GCGGAGCAGCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTCGAGCAAT
CCGCAAATAACCCACCAAGACTCGATATCGTCGAGCCAACAGGACCCCAA
TGAGGTGGTCATCATCCCGGCGGACACACCAACGAGCGCACCGGGCAGCC
ACAATGCGGCGCACCACTTCGGAGGCGGCGACTCCAGCGACACCCAGACG
GAGCAGCAGCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTCGCTTCCG
AAAGTTGCAGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCCCGGAAGA
TGTACTTCGGAGTGTGCGTGACCATCCTGATGACCGCGTCGTGGGTGGGG
GCCACCCACTGCATTAAGTACATGTACAAGTACCGTGCTCCGTACGACGA
CTTGCTGAACGACGACCAGGACACGTCCTCGAGCCGCGCGGACCTGAGCA
CGGAGCTGGAGGATATACTGGCCATCAGCGACTCGTCGCTGCACCACGTC
GAGGACGCCACCGAGATGTTCAACATACCACCGCGCCAGCCGGTCTACTT
CAGCGCCCCCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCGCTGCTCT
TCTTCCCCATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTGCGAGAAG
CTGAGCGACATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGCGCGGCTT
CACAGTGGGTCGCTTCCTCAATCGCTGCCTCTGCTTCTGCATTTTGTGGC
TGGTCACCACCTACCTGTACACCCTGTCCCTGCACGTCCTCTACGCCACG
GATGCCCTGGCCCTGTTCGCCACCAACGTGGCATGCGTGTACCTGCTATC
CTGGGTGATCCTGCACGAGCAGTTCGTGGGCGTTAGAATCGTGGCCATTA
TACTTTGCGACACAGGAATAGCGTTGCTAGCCTATATGGATGGAATTACG
GAAAGCCGAACCCTGAGCGGCGTGGTCTTGGCCACATTGGCTGGAGCTGG
CTATGCCGTGTTTAGGGTTATGTTCCGCAAGGTGATGGGCGATCCGCCGG
TGAGCCAAATCGCCTTCATATTCACCGCCCTCGGCTTCCTCAACGCCCTG
CTGCTGTGGCCCGTAGTGCTGGGACTCTACCTGACTGGCACGGAAAGCCT
CACCTCGGAGAGCATACCCTGGAACCTGCTGTTCGCGGCGAGCCTCCTGC
TCCTCGTTTTCCACGTTCTGATGCAGTTCAGTGCCGCCGTTACGTACAAC
ATGTTTGTGACATTGGGTCTGATTACGGCTGTGCCCGTTTCTGGCGCCCT
CGATGTCATACTATACAGTGCGAACTTTGCTGGCATGAAACTGGCCGGAG
TTATCCTGATTGGCATCGGATTTTTCCTCGTCATGTTTCCCGCCAACTGG
CCAGACTATATAACGCGATTGTTGCGAAGCATCATAATGCTGGGTCACAA
TGCGAGCGGTAGGCCAGCGCTTTGTAAACGAGATGCTATAGTCACGGGAC
CGTCCACCAGATATGCGCAGCGGCACATCACGCGCACGCACCATATAAGC
TAAAAGCTTTCTAGACCAT

BS07662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RD 1737 CG42322-PD 1..1737 17..1753 8685 100 Plus
CG42322-RM 1737 CG42322-PM 1..1737 17..1753 8685 100 Plus
CG42322-RL 1737 CG42322-PL 1..1737 17..1753 8685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RD 2049 CG42322-RD 276..2020 16..1760 8695 99.9 Plus
CG42322-RM 3269 CG42322-RM 304..2048 16..1760 8695 99.9 Plus
CG42322-RL 3534 CG42322-RL 276..2020 16..1760 8695 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20746820..20747303 16..499 2420 100 Plus
3R 32079331 3R 20747362..20747774 498..910 2065 100 Plus
3R 32079331 3R 20749468..20749658 1216..1406 955 100 Plus
3R 32079331 3R 20747836..20748015 908..1087 900 100 Plus
3R 32079331 3R 20749248..20749378 1088..1218 655 100 Plus
3R 32079331 3R 20750224..20750354 1496..1626 655 100 Plus
3R 32079331 3R 20753507..20753612 1655..1760 500 98.1 Plus
3R 32079331 3R 20749740..20749830 1406..1496 455 100 Plus
Blast to na_te.dros performed 2014-11-27 13:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 155..200 115..160 122 73.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9185..9230 115..160 122 73.9 Plus

BS07662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:51 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 1..1737 17..1753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:42 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 263..2018 7..1766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:55:16 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 277..2011 17..1751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:51 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 263..2018 7..1766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:22 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 277..2011 17..1751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:22 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20746821..20747303 17..499 100 -> Plus
3R 20747364..20747772 500..908 100 -> Plus
3R 20747837..20748015 909..1087 100 -> Plus
3R 20749248..20749376 1088..1216 100 -> Plus
3R 20749469..20749658 1217..1406 100 -> Plus
3R 20749741..20749830 1407..1496 100 -> Plus
3R 20750225..20750354 1497..1626 100 -> Plus
3R 20752346..20752375 1627..1656 100 -> Plus
3R 20753509..20753603 1657..1751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:55:16 Download gff for BS07662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16574970..16575098 1088..1216 100 -> Plus
arm_3R 16572543..16573025 17..499 100 -> Plus
arm_3R 16573086..16573494 500..908 100 -> Plus
arm_3R 16573559..16573737 909..1087 100 -> Plus
arm_3R 16575191..16575380 1217..1406 100 -> Plus
arm_3R 16575463..16575552 1407..1496 100 -> Plus
arm_3R 16575947..16576076 1497..1626 100 -> Plus
arm_3R 16578068..16578097 1627..1656 100 -> Plus
arm_3R 16579231..16579325 1657..1751 100   Plus

BS07662.pep Sequence

Translation from 16 to 1752

> BS07662.pep
MTRDGEIPAIFNPKRVRTPSVVVTGDSSTNGPYSNNSTGGAGASSSTAVA
PGSSAQNGGSGSGAAGSCGFSNVLTSSNPQITHQDSISSSQQDPNEVVII
PADTPTSAPGSHNAAHHFGGGDSSDTQTEQQQANGHGEESELRFRKLQAC
KESCCSELARKMYFGVCVTILMTASWVGATHCIKYMYKYRAPYDDLLNDD
QDTSSSRADLSTELEDILAISDSSLHHVEDATEMFNIPPRQPVYFSAPFF
AAWFFTNFSLLFFPIYLLGLVSTRKCEKLSDILGDVLRGFRERGFTVGRF
LNRCLCFCILWLVTTYLYTLSLHVLYATDALALFATNVACVYLLSWVILH
EQFVGVRIVAIILCDTGIALLAYMDGITESRTLSGVVLATLAGAGYAVFR
VMFRKVMGDPPVSQIAFIFTALGFLNALLLWPVVLGLYLTGTESLTSESI
PWNLLFAASLLLLVFHVLMQFSAAVTYNMFVTLGLITAVPVSGALDVILY
SANFAGMKLAGVILIGIGFFLVMFPANWPDYITRLLRSIIMLGHNASGRP
ALCKRDAIVTGPSTRYAQRHITRTHHIS*

BS07662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-PD 578 CG31203-PE 1..578 1..578 2992 100 Plus
CG42322-PM 578 CG42322-PM 1..578 1..578 2992 100 Plus
CG42322-PL 578 CG42322-PL 1..578 1..578 2992 100 Plus
CG42322-PJ 733 CG42322-PJ 1..581 1..578 2778 93.8 Plus
CG42322-PI 733 CG42322-PI 1..581 1..578 2778 93.8 Plus