Clone Sequence Records
BS07663.3prime Sequence
809 bp (760 high quality bases) assembled on 2006-01-06
> BS07663.3prime
ATGGTCTAGAAAGCTTCTAAAGTGTGCGCATTTCATTTTTACAAATGCTG
CAAACGATCTTGCAAGGGACTCTATCTGAAACCGGAGTATCTACACGATG
GAAAACCGGTGTTCCGGCCTCAGGAAGAATCCTTTTCTTCGGACTCGCAC
GGATATTGTTCGGCTTTCGCTCGCTTTCCACACAGCAGCAGAGGAGGAAG
CTCAGTGGCACTGCCTCGCCCTCCTCCAAAGTCTGTGGAAGATTTCGGTT
ACGGGTCTCTGGCAGCAAAAGACTAGCAAATCCTCCCAAGATTAGCAGGG
CTCCCATTACAATTAGCGGAAGTACGAGCATTTGCTGACCCATATGATTG
ATCATGGGAATCACTATAGGTCCCACCATGGATATTACCGAGCTAAAGCT
CATGCCCAGTCCTCGCACCACCGTGGGATACAGTTCAGATGCCATGAGCG
GCAAGACTACAAAGGACGAGCTTATGCCCATCTTGCCCACGCAGTAGAGC
AGCAGTGTGATGTCTGGGTACAGAAATGTGGCCACGCAGGCGACTCCGCC
CACCAGCATCGATATGAACAGGATCCAGCGCCTTCCGAAATAACTCAATC
CCGGCCAGAGTAGCAAATATGTTGGCAGTTCCACCGCCCCAGCCAGGAAG
AAGTTCCAGATCTCATCGCCTCCTAGCGCAGGAGCATAATAACTCAGTCC
CACGTAGACACTGGTGTTGGCAAACCAAATAAGGGTTATGATCAGGGTCT
TCCGACGCATATTGGGTCCCCGAAACAAGTCCAATATCCCATAGTGGGTG
GTCATTGAA
BS07663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-PA | 1815 | CG3790-RA | 1023..1815 | 809..17 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-RA | 1947 | CG3790-RA | 1105..1897 | 809..17 | 3965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12873218..12873687 | 340..809 | 2350 | 100 | Plus |
2R | 25286936 | 2R | 12872837..12873161 | 17..341 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:23:53 has no hits.
BS07663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:43 Download gff for
BS07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-PA | 1025..1815 | 17..807 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:15 Download gff for
BS07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-PA | 1025..1815 | 17..807 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:39 Download gff for
BS07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 1105..1908 | 6..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:51 Download gff for
BS07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 1105..1908 | 6..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:51 Download gff for
BS07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12872826..12873160 | 6..340 | 98 | <- | Plus |
2R | 12873219..12873687 | 341..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:39 Download gff for
BS07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8760331..8760665 | 6..340 | 98 | <- | Plus |
arm_2R | 8760724..8761192 | 341..809 | 100 | | Plus |
BS07663.5prime Sequence
917 bp (876 high quality bases) assembled on 2006-01-06
> BS07663.5prime
GAAGTTATCAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCT
CCTTTGGTCTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCC
GCGCTGCCCTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCAC
ACCTCAGCACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACT
ATGTGCAGCTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCC
TATGCCGAGTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTA
TCTTGAGTATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATT
TGCTCAAGTTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGC
TGGCACTACGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAA
CCTGGTGTGCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCG
GTGTTGGCGGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTG
TGGGGCAGGCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGC
CTGTGCGGCCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGC
GCTTTGTGGTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTA
CTGGCCATTGAGCTGGTGGGACCGGAGAGGAGAGTTTTTTGCACCATCGT
CTCGAATATCGCCTACTCCTTGGGCTTGGTGGTATTAGCCGGAGTTATCT
ATATCGTACGTGATTGGCGGGAACTCAGTTTGGCAGTGTCCATGCCTTTG
CTGATGCTTTTCTCCTGCTTCTTCGTGCTCCCGGAATCACCACGATGGTT
AATGGCCGTGGGAAAAA
BS07663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-PA | 1815 | CG3790-RA | 1..901 | 17..917 | 4480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-RA | 1947 | CG3790-RA | 80..983 | 14..917 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12873809..12874282 | 917..444 | 2355 | 99.8 | Minus |
2R | 25286936 | 2R | 12874339..12874657 | 445..127 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 12874818..12874933 | 129..14 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:13:50 has no hits.
BS07663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:44 Download gff for
BS07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:17 Download gff for
BS07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:46 Download gff for
BS07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 71..978 | 6..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:54 Download gff for
BS07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 71..978 | 6..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:54 Download gff for
BS07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12873814..12874280 | 446..912 | 99 | <- | Minus |
2R | 12874339..12874654 | 130..445 | 100 | <- | Minus |
2R | 12874818..12874942 | 6..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:46 Download gff for
BS07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8761319..8761785 | 446..912 | 99 | <- | Minus |
arm_2R | 8761844..8762159 | 130..445 | 100 | <- | Minus |
arm_2R | 8762323..8762447 | 6..129 | 96 | | Minus |
BS07663.complete Sequence
1847 bp assembled on 2008-01-03
GenBank Submission: FJ635943
> BS07663.complete
GAAGTTATCAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCT
CCTTTGGTCTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCC
GCGCTGCCCTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCAC
ACCTCAGCACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACT
ATGTGCAGCTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCC
TATGCCGAGTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTA
TCTTGAGTATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATT
TGCTCAAGTTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGC
TGGCACTACGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAA
CCTGGTGTGCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCG
GTGTTGGCGGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTG
TGGGGCAGGCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGC
CTGTGCGGCCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGC
GCTTTGTGGTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTA
CTGGCCATTGAGCTGGTGGGACCGGAGAGGAGAGTTTTTTGCACCATCGT
CTCGAATATCGCCTACTCCTTGGGCTTGGTGGTATTAGCCGGAGTTATCT
ATATCGTACGTGATTGGCGGGAACTCAGTTTGGCAGTGTCCATGCCTTTG
CTGATGCTTTTCTCCTGCTTCTTCGTGCTTCCGGAATCACCACGATGGTT
AATGGCCGTGGGAAAAACCAGGAGGGCCATTAAAATTCTCAAAGTAATGG
CCAGAGTGAATGGTGTGCGCGTAAATCGGGATTTTGTGGAACGGTTGCAG
CGAAAACTTGTCATCACAAGGGCTGCGGAAACCAAATCTTCAATGACCAC
CCACTATGGGATATTGGACTTGTTTCGGGGACCCAATATGCGTCGGAAGA
CCCTGATCATAACCCTTATTTGGTTTGCCAACACCAGTGTCTACGTGGGA
CTGAGTTATTATGCTCCTGCGCTAGGAGGCGATGAGATCTGGAACTTCTT
CCTGGCTGGGGCGGTGGAACTGCCAACATATTTGCTACTCTGGCCGGGAT
TGAGTTATTTCGGAAGGCGCTGGATCCTGTTCATATCGATGCTGGTGGGC
GGAGTCGCCTGCGTGGCCACATTTCTGTACCCAGACATCACACTGCTGCT
CTACTGCGTGGGCAAGATGGGCATAAGCTCGTCCTTTGTAGTCTTGCCGC
TCATGGCATCTGAACTGTATCCCACGGTGGTGCGAGGACTGGGCATGAGC
TTTAGCTCGGTAATATCCATGGTGGGACCTATAGTGATTCCCATGATCAA
TCATATGGGTCAGCAAATGCTCGTACTTCCGCTAATTGTAATGGGAGCCC
TGCTAATCTTGGGAGGATTTGCTAGTCTTTTGCTGCCAGAGACCCGTAAC
CGAAATCTTCCACAGACTTTGGAGGAGGGCGAGGCAGTGCCACTGAGCTT
CCTCCTCTGCTGCTGTGTGGAAAGCGAGCGAAAGCCGAACAATATCCGTG
CGAGTCCGAAGAAAAGGATTCTTCCTGAGGCCGGAACACCGGTTTTCCAT
CGTGTAGATACTCCGGTTTCAGATAGAGTCCCTTGCAAGATCGTTTGCAG
CATTTGTAAAAATGAAATGCGCACACTTTAGAAGCTTTCTAGACCAT
BS07663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-RA | 1815 | CG3790-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-RA | 1947 | CG3790-RA | 80..1897 | 14..1831 | 9090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12873218..12874282 | 1508..444 | 5325 | 100 | Minus |
2R | 25286936 | 2R | 12872837..12873161 | 1831..1507 | 1625 | 100 | Minus |
2R | 25286936 | 2R | 12874339..12874657 | 445..127 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 12874818..12874933 | 129..14 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:02:17 has no hits.
BS07663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:59 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 1..1815 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:07 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 84..1898 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:23 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 83..1897 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:59 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 72..1909 | 6..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:16 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3790-RA | 83..1897 | 17..1831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:16 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12872837..12873160 | 1508..1831 | 100 | <- | Minus |
2R | 12874339..12874654 | 130..445 | 100 | <- | Minus |
2R | 12874818..12874930 | 17..129 | 100 | | Minus |
2R | 12873219..12874280 | 446..1507 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:23 Download gff for
BS07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8760342..8760665 | 1508..1831 | 100 | <- | Minus |
arm_2R | 8760724..8761785 | 446..1507 | 100 | <- | Minus |
arm_2R | 8761844..8762159 | 130..445 | 100 | <- | Minus |
arm_2R | 8762323..8762435 | 17..129 | 100 | | Minus |
BS07663.pep Sequence
Translation from 16 to 1830
> BS07663.pep
MDFDEVLREVGSFGLYQKVIICSVLLPAALPCAFHAYSQLFIAATPQHFC
RVPELEPWTQDYVQLVKNLSIPRNRNGAYAECSMYSRNYTDIVRYLEYRP
PPDLLRQQAEDLLKLQPDTTQVVPCQHGWHYDKSIYSSTVVQEWNLVCDR
SFLVTLALVVFGVGGLLGNYVFGYLVDLWGRRPSFYAYLLLEIIACAASA
FAWNYYTWLGLRFVVGLTVPAILASPYVLAIELVGPERRVFCTIVSNIAY
SLGLVVLAGVIYIVRDWRELSLAVSMPLLMLFSCFFVLPESPRWLMAVGK
TRRAIKILKVMARVNGVRVNRDFVERLQRKLVITRAAETKSSMTTHYGIL
DLFRGPNMRRKTLIITLIWFANTSVYVGLSYYAPALGGDEIWNFFLAGAV
ELPTYLLLWPGLSYFGRRWILFISMLVGGVACVATFLYPDITLLLYCVGK
MGISSSFVVLPLMASELYPTVVRGLGMSFSSVISMVGPIVIPMINHMGQQ
MLVLPLIVMGALLILGGFASLLLPETRNRNLPQTLEEGEAVPLSFLLCCC
VESERKPNNIRASPKKRILPEAGTPVFHRVDTPVSDRVPCKIVCSICKNE
MRTL*
BS07663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3790-PA | 604 | CG3790-PA | 1..604 | 1..604 | 3153 | 100 | Plus |
CG9317-PC | 674 | CG9317-PC | 35..584 | 2..557 | 1108 | 40.8 | Plus |
CG9317-PA | 674 | CG9317-PA | 35..584 | 2..557 | 1108 | 40.8 | Plus |
Orct-PB | 548 | CG6331-PB | 1..519 | 1..539 | 876 | 35.7 | Plus |
Orct-PA | 548 | CG6331-PA | 1..519 | 1..539 | 876 | 35.7 | Plus |