Clone BS07663 Report

Search the DGRC for BS07663

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG3790-RA
Protein status:BS07663.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07663.3prime Sequence

809 bp (760 high quality bases) assembled on 2006-01-06

> BS07663.3prime
ATGGTCTAGAAAGCTTCTAAAGTGTGCGCATTTCATTTTTACAAATGCTG
CAAACGATCTTGCAAGGGACTCTATCTGAAACCGGAGTATCTACACGATG
GAAAACCGGTGTTCCGGCCTCAGGAAGAATCCTTTTCTTCGGACTCGCAC
GGATATTGTTCGGCTTTCGCTCGCTTTCCACACAGCAGCAGAGGAGGAAG
CTCAGTGGCACTGCCTCGCCCTCCTCCAAAGTCTGTGGAAGATTTCGGTT
ACGGGTCTCTGGCAGCAAAAGACTAGCAAATCCTCCCAAGATTAGCAGGG
CTCCCATTACAATTAGCGGAAGTACGAGCATTTGCTGACCCATATGATTG
ATCATGGGAATCACTATAGGTCCCACCATGGATATTACCGAGCTAAAGCT
CATGCCCAGTCCTCGCACCACCGTGGGATACAGTTCAGATGCCATGAGCG
GCAAGACTACAAAGGACGAGCTTATGCCCATCTTGCCCACGCAGTAGAGC
AGCAGTGTGATGTCTGGGTACAGAAATGTGGCCACGCAGGCGACTCCGCC
CACCAGCATCGATATGAACAGGATCCAGCGCCTTCCGAAATAACTCAATC
CCGGCCAGAGTAGCAAATATGTTGGCAGTTCCACCGCCCCAGCCAGGAAG
AAGTTCCAGATCTCATCGCCTCCTAGCGCAGGAGCATAATAACTCAGTCC
CACGTAGACACTGGTGTTGGCAAACCAAATAAGGGTTATGATCAGGGTCT
TCCGACGCATATTGGGTCCCCGAAACAAGTCCAATATCCCATAGTGGGTG
GTCATTGAA

BS07663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-PA 1815 CG3790-RA 1023..1815 809..17 3965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-RA 1947 CG3790-RA 1105..1897 809..17 3965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12873218..12873687 340..809 2350 100 Plus
2R 25286936 2R 12872837..12873161 17..341 1625 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:23:53 has no hits.

BS07663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:43 Download gff for BS07663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-PA 1025..1815 17..807 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:15 Download gff for BS07663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-PA 1025..1815 17..807 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:39 Download gff for BS07663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 1105..1908 6..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:51 Download gff for BS07663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 1105..1908 6..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:51 Download gff for BS07663.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12872826..12873160 6..340 98 <- Plus
2R 12873219..12873687 341..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:39 Download gff for BS07663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8760331..8760665 6..340 98 <- Plus
arm_2R 8760724..8761192 341..809 100   Plus

BS07663.5prime Sequence

917 bp (876 high quality bases) assembled on 2006-01-06

> BS07663.5prime
GAAGTTATCAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCT
CCTTTGGTCTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCC
GCGCTGCCCTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCAC
ACCTCAGCACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACT
ATGTGCAGCTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCC
TATGCCGAGTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTA
TCTTGAGTATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATT
TGCTCAAGTTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGC
TGGCACTACGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAA
CCTGGTGTGCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCG
GTGTTGGCGGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTG
TGGGGCAGGCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGC
CTGTGCGGCCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGC
GCTTTGTGGTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTA
CTGGCCATTGAGCTGGTGGGACCGGAGAGGAGAGTTTTTTGCACCATCGT
CTCGAATATCGCCTACTCCTTGGGCTTGGTGGTATTAGCCGGAGTTATCT
ATATCGTACGTGATTGGCGGGAACTCAGTTTGGCAGTGTCCATGCCTTTG
CTGATGCTTTTCTCCTGCTTCTTCGTGCTCCCGGAATCACCACGATGGTT
AATGGCCGTGGGAAAAA

BS07663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-PA 1815 CG3790-RA 1..901 17..917 4480 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-RA 1947 CG3790-RA 80..983 14..917 4505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12873809..12874282 917..444 2355 99.8 Minus
2R 25286936 2R 12874339..12874657 445..127 1595 100 Minus
2R 25286936 2R 12874818..12874933 129..14 580 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:13:50 has no hits.

BS07663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:44 Download gff for BS07663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:17 Download gff for BS07663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:46 Download gff for BS07663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 71..978 6..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:54 Download gff for BS07663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 71..978 6..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:54 Download gff for BS07663.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12873814..12874280 446..912 99 <- Minus
2R 12874339..12874654 130..445 100 <- Minus
2R 12874818..12874942 6..129 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:46 Download gff for BS07663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8761319..8761785 446..912 99 <- Minus
arm_2R 8761844..8762159 130..445 100 <- Minus
arm_2R 8762323..8762447 6..129 96   Minus

BS07663.complete Sequence

1847 bp assembled on 2008-01-03

GenBank Submission: FJ635943

> BS07663.complete
GAAGTTATCAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCT
CCTTTGGTCTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCC
GCGCTGCCCTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCAC
ACCTCAGCACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACT
ATGTGCAGCTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCC
TATGCCGAGTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTA
TCTTGAGTATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATT
TGCTCAAGTTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGC
TGGCACTACGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAA
CCTGGTGTGCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCG
GTGTTGGCGGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTG
TGGGGCAGGCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGC
CTGTGCGGCCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGC
GCTTTGTGGTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTA
CTGGCCATTGAGCTGGTGGGACCGGAGAGGAGAGTTTTTTGCACCATCGT
CTCGAATATCGCCTACTCCTTGGGCTTGGTGGTATTAGCCGGAGTTATCT
ATATCGTACGTGATTGGCGGGAACTCAGTTTGGCAGTGTCCATGCCTTTG
CTGATGCTTTTCTCCTGCTTCTTCGTGCTTCCGGAATCACCACGATGGTT
AATGGCCGTGGGAAAAACCAGGAGGGCCATTAAAATTCTCAAAGTAATGG
CCAGAGTGAATGGTGTGCGCGTAAATCGGGATTTTGTGGAACGGTTGCAG
CGAAAACTTGTCATCACAAGGGCTGCGGAAACCAAATCTTCAATGACCAC
CCACTATGGGATATTGGACTTGTTTCGGGGACCCAATATGCGTCGGAAGA
CCCTGATCATAACCCTTATTTGGTTTGCCAACACCAGTGTCTACGTGGGA
CTGAGTTATTATGCTCCTGCGCTAGGAGGCGATGAGATCTGGAACTTCTT
CCTGGCTGGGGCGGTGGAACTGCCAACATATTTGCTACTCTGGCCGGGAT
TGAGTTATTTCGGAAGGCGCTGGATCCTGTTCATATCGATGCTGGTGGGC
GGAGTCGCCTGCGTGGCCACATTTCTGTACCCAGACATCACACTGCTGCT
CTACTGCGTGGGCAAGATGGGCATAAGCTCGTCCTTTGTAGTCTTGCCGC
TCATGGCATCTGAACTGTATCCCACGGTGGTGCGAGGACTGGGCATGAGC
TTTAGCTCGGTAATATCCATGGTGGGACCTATAGTGATTCCCATGATCAA
TCATATGGGTCAGCAAATGCTCGTACTTCCGCTAATTGTAATGGGAGCCC
TGCTAATCTTGGGAGGATTTGCTAGTCTTTTGCTGCCAGAGACCCGTAAC
CGAAATCTTCCACAGACTTTGGAGGAGGGCGAGGCAGTGCCACTGAGCTT
CCTCCTCTGCTGCTGTGTGGAAAGCGAGCGAAAGCCGAACAATATCCGTG
CGAGTCCGAAGAAAAGGATTCTTCCTGAGGCCGGAACACCGGTTTTCCAT
CGTGTAGATACTCCGGTTTCAGATAGAGTCCCTTGCAAGATCGTTTGCAG
CATTTGTAAAAATGAAATGCGCACACTTTAGAAGCTTTCTAGACCAT

BS07663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-RA 1815 CG3790-PA 1..1815 17..1831 9075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-RA 1947 CG3790-RA 80..1897 14..1831 9090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12873218..12874282 1508..444 5325 100 Minus
2R 25286936 2R 12872837..12873161 1831..1507 1625 100 Minus
2R 25286936 2R 12874339..12874657 445..127 1595 100 Minus
2R 25286936 2R 12874818..12874933 129..14 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:02:17 has no hits.

BS07663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:59 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 1..1815 17..1831 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:07 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 84..1898 17..1831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:23 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 83..1897 17..1831 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:59 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 72..1909 6..1842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:16 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3790-RA 83..1897 17..1831 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:16 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12872837..12873160 1508..1831 100 <- Minus
2R 12874339..12874654 130..445 100 <- Minus
2R 12874818..12874930 17..129 100   Minus
2R 12873219..12874280 446..1507 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:23 Download gff for BS07663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8760342..8760665 1508..1831 100 <- Minus
arm_2R 8760724..8761785 446..1507 100 <- Minus
arm_2R 8761844..8762159 130..445 100 <- Minus
arm_2R 8762323..8762435 17..129 100   Minus

BS07663.pep Sequence

Translation from 16 to 1830

> BS07663.pep
MDFDEVLREVGSFGLYQKVIICSVLLPAALPCAFHAYSQLFIAATPQHFC
RVPELEPWTQDYVQLVKNLSIPRNRNGAYAECSMYSRNYTDIVRYLEYRP
PPDLLRQQAEDLLKLQPDTTQVVPCQHGWHYDKSIYSSTVVQEWNLVCDR
SFLVTLALVVFGVGGLLGNYVFGYLVDLWGRRPSFYAYLLLEIIACAASA
FAWNYYTWLGLRFVVGLTVPAILASPYVLAIELVGPERRVFCTIVSNIAY
SLGLVVLAGVIYIVRDWRELSLAVSMPLLMLFSCFFVLPESPRWLMAVGK
TRRAIKILKVMARVNGVRVNRDFVERLQRKLVITRAAETKSSMTTHYGIL
DLFRGPNMRRKTLIITLIWFANTSVYVGLSYYAPALGGDEIWNFFLAGAV
ELPTYLLLWPGLSYFGRRWILFISMLVGGVACVATFLYPDITLLLYCVGK
MGISSSFVVLPLMASELYPTVVRGLGMSFSSVISMVGPIVIPMINHMGQQ
MLVLPLIVMGALLILGGFASLLLPETRNRNLPQTLEEGEAVPLSFLLCCC
VESERKPNNIRASPKKRILPEAGTPVFHRVDTPVSDRVPCKIVCSICKNE
MRTL*

BS07663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3790-PA 604 CG3790-PA 1..604 1..604 3153 100 Plus
CG9317-PC 674 CG9317-PC 35..584 2..557 1108 40.8 Plus
CG9317-PA 674 CG9317-PA 35..584 2..557 1108 40.8 Plus
Orct-PB 548 CG6331-PB 1..519 1..539 876 35.7 Plus
Orct-PA 548 CG6331-PA 1..519 1..539 876 35.7 Plus