Clone BS07665 Report

Search the DGRC for BS07665

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptABCB7-RC
Protein status:BS07665.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07665.3prime Sequence

929 bp (857 high quality bases) assembled on 2006-01-06

> BS07665.3prime
ATGGTCTAGAAAGCTTCTACGCCACGCCCCGCGTCTTCTTCGCTGCCACC
TCCTCATTGATCTCCCGGCTCGGGTCGAACTGCTGCGTCTGCGTCTCCCA
GAGGCGGGCATACAGTCCATTCTGCCTCAGCAGCTCCGAATGGGTGCCAC
GTTCACCTACACGTCCGTTCTCGAGCACCAGAATCTCGTCCGCATCCTTG
ACTGTCGAGAGACGGTGGGCAATGCAAATGCTAGTGCGTCCTGAGGTAGC
GCGGGTCAGAGCCTGCAGAATGTTATGCTCGGTGATCGAGTCCAGACTGC
TTGTAGCCTCGTCAAAGATCAGAATGGGGGTGTTCTTCAGTATGGCCCTA
GCGATGGCAACGCGCTGCTTCTCGCCACCGGATAACTTTAATCCACGTTC
GCCTACCTGAGTGGAGTACTGTCCTGGCCAGCTCATGATGGAGTCATGCA
AATCAGCCATGCGGGCAGCATTCTGCACTTCTGCGTGGGACTTGGACAGG
TTGCCATAGTGGATATTGTGCTCGATGGTGTTGTGGAATAGCACCGAATC
CTGCGGCACCACTGCAATAACCTTGCGCAGGCTCTCCAAATCCACGGCGC
TGATATCCTGGCCACCGATCAACACTTTACCAGAGTTTGGCTCAAAGAAG
CGGAAGAGAAGGCGCACCATCGACGATTTTCCTGAGCCAGAGCCGCCCAC
AATGGCGACGTTTTTACCGGCGGGTATGGTGAAACTGAGGTCCCGGAAAA
TGGGCTTGCCAGGTTCGTACTCGAAGCTCACGTTGCGGAACTCAATGGAT
GAGTTAGTGGTGTCCACGAACAGGGGCTGGGCATTGGCGGCTGTCTGAAT
GCTACTGTCCACGTTCATCAACGTGAACATGGCCCGCATGTCCAGCAAAG
CCTGTCGCACCTCACGATAAACACTGCCC

BS07665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7955-PA 2232 CG7955-RA 1320..2232 929..17 4565 100 Minus
CG7955-PB 2130 CG7955-RB 1218..2130 929..17 4565 100 Minus
CG7955-PC 1821 CG7955-RC 909..1821 929..17 4565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
ABCB7-RB 2387 CG7955-RB 1305..2218 929..16 4570 100 Minus
ABCB7-RA 2743 CG7955-RA 1407..2320 929..16 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1622011..1622665 929..275 3275 100 Minus
3L 28110227 3L 1622732..1622990 274..16 1295 100 Minus
Blast to na_te.dros performed 2015-02-02 18:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 427..464 67..30 109 76.3 Minus

BS07665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:48 Download gff for BS07665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7955-PA 1320..2232 17..929 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:21 Download gff for BS07665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7955-PC 909..1821 17..929 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:06 Download gff for BS07665.3prime
Subject Subject Range Query Range Percent Splice Strand
ABCB7-RA 1407..2320 16..929 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:29 Download gff for BS07665.3prime
Subject Subject Range Query Range Percent Splice Strand
ABCB7-RA 1407..2320 16..929 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:29 Download gff for BS07665.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1622011..1622665 275..929 100 -> Minus
3L 1622732..1622990 16..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:06 Download gff for BS07665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1622011..1622665 275..929 100 -> Minus
arm_3L 1622732..1622990 16..274 100   Minus

BS07665.5prime Sequence

846 bp (826 high quality bases) assembled on 2006-01-06

> BS07665.5prime
GAAGTTATCAGTCGACATGCTGCGTGCCATGATGGCCTACATCTGGCCAA
AGGAGGATCCACTGGTGCGAAAGCGGGTGGGTATTTCCCTGGGTCTGTTG
GCTGGCTCCAAGCTGCTGACCGTCTGTGTCCCCTTCTTGTTCAAAGGAGC
TGTGGACACGATGACAACGCTGAACATGGACACTGCCCCGGATGCGGTCC
TCTCCGCAGCCACCGCACTGATGTTGGGATATGGCATTGCTAGAGCCAGT
GCGGCGGGCTTTAATGAGTTGCGGAATGCAGTGTTTGCCAAGGTGGCCCA
CCACTCGATCCGAAAGATCGCCAGCAATGTGTTCCTGCATCTGCACAACC
TGGATCTGGCCTTCCACCTGAACAAACAAACTGGAGCACTGTCAAAGACC
ATCGATCGAGGATCGAGGGGCATTAACTTTGTGCTCTCCGCCATGGTCTT
CAACATTGTGCCCACTATCTTTGAGCTGGCCCTCGTGTCCAGTATCCTGG
GAGTGAAGTGTGGCCTGGCCTTCGCTGGTGTCAGCATGGGCTGCGTTGGC
ATATACGCTGCCTACACTCTGAGTGTGACCCAGTGGCGCACCCAGTTCCG
TGTATTTATGAACCAGGCGGAGAACGAGGCCGGCAACAAGGCCGTAGACT
CGCTGATCAACTACGAGACGGTGAAGTACTTCAACAACGAANAGTACGAG
GCGGGTTGCTACAACGAGGTGCTGAAGAAGTATGAGGCGGCCAGCTTGAA
GACTAGCTCCAGTCTCGCTCTGCTCAACTTTGGCCAGAACGCCATTTTCA
GCAGCGCACTGAGTCTGATTATGGTATTGGCCGCCAAGGAGATTGC

BS07665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7955-PA 2232 CG7955-RA 412..1241 17..846 4131 99.8 Plus
CG7955-PB 2130 CG7955-RB 310..1139 17..846 4131 99.8 Plus
CG7955-PC 1821 CG7955-RC 1..830 17..846 4131 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
ABCB7-RB 2387 CG7955-RB 397..1226 17..846 4139 99.9 Plus
ABCB7-RA 2743 CG7955-RA 499..1328 17..846 4139 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1621317..1621932 231..846 3069 99.8 Plus
3L 28110227 3L 1621102..1621257 75..230 780 100 Plus
3L 28110227 3L 1620984..1621043 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:16:01 has no hits.

BS07665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:49 Download gff for BS07665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7955-PA 407..1241 10..846 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:22 Download gff for BS07665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7955-PC 1..830 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:19 Download gff for BS07665.5prime
Subject Subject Range Query Range Percent Splice Strand
ABCB7-RA 494..1328 10..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:13 Download gff for BS07665.5prime
Subject Subject Range Query Range Percent Splice Strand
ABCB7-RA 494..1328 10..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:13 Download gff for BS07665.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1620979..1621042 10..75 95 -> Plus
3L 1621103..1621257 76..230 100 -> Plus
3L 1621317..1621932 231..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:19 Download gff for BS07665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1620979..1621042 10..75 95 -> Plus
arm_3L 1621103..1621257 76..230 100 -> Plus
arm_3L 1621317..1621932 231..846 99   Plus

BS07665.complete Sequence

1853 bp assembled on 2008-01-03

GenBank Submission: FJ635944

> BS07665.complete
GAAGTTATCAGTCGACATGCTGCGTGCCATGATGGCCTACATCTGGCCAA
AGGAGGATCCACTGGTGCGAAAGCGGGTGGGTATTTCCCTGGGTCTGTTG
GCTGGCTCCAAGCTGCTGACCGTCTGTGTCCCCTTCTTGTTCAAAGGAGC
TGTGGACACGATGACAACGCTGAACATGGACACTGCCCCGGATGCGGTCC
TCTCCGCAGCCACCGCACTGATGTTGGGATATGGCATTGCTAGAGCCAGT
GCGGCGGGCTTTAATGAGTTGCGGAATGCAGTGTTTGCCAAGGTGGCCCA
CCACTCGATCCGAAAGATCGCCAGCAATGTGTTCCTGCATCTGCACAACC
TGGATCTGGCCTTCCACCTGAACAAACAAACTGGAGCACTGTCAAAGACC
ATCGATCGAGGATCGAGGGGCATTAACTTTGTGCTCTCCGCCATGGTCTT
CAACATTGTGCCCACTATCTTTGAGCTGGCCCTCGTGTCCAGTATCCTGG
GAGTGAAGTGTGGCCTGGCCTTCGCTGGTGTCAGCATGGGCTGCGTTGGC
ATATACGCTGCCTACACTCTGAGTGTGACCCAGTGGCGCACCCAGTTCCG
TGTATTTATGAACCAGGCGGAGAACGAGGCCGGCAACAAGGCCGTAGACT
CGCTGATCAACTACGAGACGGTGAAGTACTTCAACAACGAAAAGTACGAG
GCGGGTTGCTACAACGAGGTGCTGAAGAAGTATGAGGCGGCCAGCTTGAA
GACTAGCTCCAGTCTCGCTCTGCTCAACTTTGGCCAGAACGCCATTTTCA
GCAGCGCACTGAGTCTGATTATGGTATTGGCCGCCAAGGAGATTGCCCAA
GGCAACATGACGGTTGGAGATTTGGTGATGGTCAACGCCCTGCTCTTCCA
GCTCTCGATCCCCCTCGGTTTTCTGGGCAGTGTTTATCGTGAGGTGCGAC
AGGCTTTGCTGGACATGCGGGCCATGTTCACGTTGATGAACGTGGACAGT
AGCATTCAGACAGCCGCCAATGCCCAGCCCCTGTTCGTGGACACCACTAA
CTCATCCATTGAGTTCCGCAACGTGAGCTTCGAGTACGAACCTGGCAAGC
CCATTTTCCGGGACCTCAGTTTCACCATACCCGCCGGTAAAAACGTCGCC
ATTGTGGGCGGCTCTGGCTCAGGAAAATCGTCGATGGTGCGCCTTCTCTT
CCGCTTCTTTGAGCCAAACTCTGGTAAAGTGTTGATCGGTGGCCAGGATA
TCAGCGCCGTGGATTTGGAGAGCCTGCGCAAGGTTATTGCAGTGGTGCCG
CAGGATTCGGTGCTATTCCACAACACCATCGAGCACAATATCCACTATGG
CAACCTGTCCAAGTCCCACGCAGAAGTGCAGAATGCTGCCCGCATGGCTG
ATTTGCATGACTCCATCATGAGCTGGCCAGGACAGTACTCCACTCAGGTA
GGCGAACGTGGATTAAAGTTATCCGGTGGCGAGAAGCAGCGCGTTGCCAT
CGCTAGGGCCATACTGAAGAACACCCCCATTCTGATCTTTGACGAGGCTA
CAAGCAGTCTGGACTCGATCACCGAGCATAACATTCTGCAGGCTCTGACC
CGCGCTACCTCAGGACGCACTAGCATTTGCATTGCCCACCGTCTCTCGAC
AGTCAAGGATGCGGACGAGATTCTGGTGCTCGAGAACGGACGTGTAGGTG
AACGTGGCACCCATTCGGAGCTGCTGAGGCAGAATGGACTGTATGCCCGC
CTCTGGGAGACGCAGACGCAGCAGTTCGACCCGAGCCGGGAGATCAATGA
GGAGGTGGCAGCGAAGAAGACGCGGGGCGTGGCGTAGAAGCTTTCTAGAC
CAT

BS07665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
ABCB7-RB 2130 CG7955-PB 310..2130 17..1837 9105 100 Plus
ABCB7-RA 2232 CG7955-PA 412..2232 17..1837 9105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
ABCB7-RB 2387 CG7955-RB 397..2218 17..1838 9110 100 Plus
ABCB7-RA 2743 CG7955-RA 499..2320 17..1838 9110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1621317..1622665 231..1579 6745 100 Plus
3L 28110227 3L 1622732..1622990 1580..1838 1295 100 Plus
3L 28110227 3L 1621102..1621257 75..230 780 100 Plus
3L 28110227 3L 1620984..1621043 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:44:16 has no hits.

BS07665.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:00 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
CG7955-RC 1..1821 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:48 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
CG7955-RC 783..2603 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:31 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
ABCB7-RA 499..2319 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:00 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
CG7955-RC 778..2604 10..1838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:15 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
ABCB7-RA 499..2319 17..1837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:15 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1620984..1621042 17..75 100 -> Plus
3L 1621103..1621257 76..230 100 -> Plus
3L 1621317..1622665 231..1579 100 -> Plus
3L 1622732..1622989 1580..1837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:31 Download gff for BS07665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1620984..1621042 17..75 100 -> Plus
arm_3L 1621103..1621257 76..230 100 -> Plus
arm_3L 1621317..1622665 231..1579 100 -> Plus
arm_3L 1622732..1622989 1580..1837 100   Plus

BS07665.pep Sequence

Translation from 16 to 1836

> BS07665.pep
MLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMT
TLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRK
IASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPT
IFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQ
AENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSL
ALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPL
GFLGSVYREVRQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEF
RNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEP
NSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKS
HAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAIL
KNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDAD
EILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEVAAK
KTRGVA*

BS07665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
ABCB7-PB 709 CG7955-PB 104..709 1..606 3034 100 Plus
ABCB7-PA 743 CG7955-PA 138..743 1..606 3034 100 Plus
Hmt-1-PA 866 CG4225-PA 232..817 2..588 1183 42.8 Plus
Mdr49-PA 1302 CG3879-PA 94..635 44..579 564 28.8 Plus
CG1824-PA 761 CG1824-PA 196..711 80..599 556 30.8 Plus