Clone Sequence Records
BS07668.3prime Sequence
908 bp (857 high quality bases) assembled on 2006-01-06
> BS07668.3prime
ATGGTCTAGAAAGCTTTTATTTTGCTGAACTTTTGGCCTCCAAGAAAAAT
GCTTTGTTTGCCATGCGGTTGGTTTTGCCATTGGGACTGCGCACCAGATC
CTCCACGATGATGGCACCTCCGTTCAACTGCTTGTACTTGGCATCGATAT
GGGTCTCCACATAGTCCACAATGTCCTGGGCCGTGAGAGCACTACCCCGC
TTCTTGACCACGGCCGCGGTGGCCTCATCACCGTTGATCTCATTCCACAC
CCCGAATACACAGACTTCAACCACGTCTGGCATCTTTGAGATGACACTCT
CGATTTCGTTGGGATAGTACATGATGTTCTGGAACTTAAGCATGTCCTTC
TTGCGCTCCACAATGTATATAAAGCCATCGTCATCCACGTATCCGAGGTC
CCCTGTGTGGAACCAGTTATGGTGGTCTCTCATTTTGTGTGTTTCCTCTG
GATTGCCATAGTACCCGGCCCAATATTGACCATTCCAAAGGCACAGCTCA
CCCACCTCATCGGGCCCAAGGGATTCACCCTTTTCACAGATCACTTTAAG
CTTAAGTCCCGCCACCAAACGACCCACCGAATTCGGCTTCTCATCGAAGT
GTAAGTTCAAGGCGGCCATGCTGCCCAGTTCTGTAAAGCCGTAGGCAAAG
TGTAGGCAGTCCTTGCTTAGGCGACTCCTGATCCGATGCTGTGTCTCTAC
CGAAGCCCGTGATCCTCCAAAAAGGTAGTACCTTAAGCTCGACAAGTCGG
AGGTGGTGAACGAGGGAGAGTTGACCATCATGGCCATGTGCGCGGGCGCT
TGAATTATCCAAGTGATCTGGTGCTCTTCTACGAGTCGCATGAAGAACTC
CGGATCGAAGATATTATCTGCTATAATACGCTTGGTGCTGAATACCCCGG
ATGTACAG
BS07668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-PA | 1617 | CG11407-RA | 730..1617 | 904..17 | 4440 | 100 | Minus |
CG6300-PA | 1614 | CG6300-RA | 1282..1355 | 352..279 | 145 | 87.8 | Minus |
CG11659-PA | 1641 | CG11659-RA | 1282..1355 | 352..279 | 145 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1789 | CG11407-RA | 792..1682 | 904..14 | 4455 | 100 | Minus |
CG6300-RA | 1724 | CG6300-RA | 940..1630 | 744..54 | 605 | 73.1 | Minus |
CG11659-RA | 1705 | CG11659-RA | 940..1630 | 744..54 | 575 | 72.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19782148..19783038 | 904..14 | 4455 | 100 | Minus |
3R | 32079331 | 3R | 19771476..19772166 | 54..744 | 575 | 72.2 | Plus |
3R | 32079331 | 3R | 19775534..19776224 | 54..744 | 545 | 71.9 | Plus |
3L | 28110227 | 3L | 5872944..5873104 | 418..258 | 235 | 76.4 | Minus |
3L | 28110227 | 3L | 5874981..5875206 | 418..193 | 200 | 72.6 | Minus |
3R | 32079331 | 3R | 19780226..19780341 | 366..251 | 190 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:55:10 has no hits.
BS07668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:52 Download gff for
BS07668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 725..1617 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:27 Download gff for
BS07668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 725..1617 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:18:48 Download gff for
BS07668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 787..1682 | 14..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:23 Download gff for
BS07668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 787..1682 | 14..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:23 Download gff for
BS07668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19782143..19783038 | 14..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:18:48 Download gff for
BS07668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15607865..15608760 | 14..908 | 99 | | Minus |
BS07668.5prime Sequence
913 bp (818 high quality bases) assembled on 2006-01-06
> BS07668.5prime
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTCAA
GCGCCCGCGCACATGGGCATGATGGTCAACTCTCCCCTCGTCACCACCTC
CGACTTGTCGAGC
BS07668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-PA | 1617 | CG11407-RA | 1..870 | 17..886 | 4325 | 99.8 | Plus |
CG6300-PA | 1614 | CG6300-RA | 548..587 | 564..603 | 175 | 97.5 | Plus |
CG11659-PA | 1641 | CG11659-RA | 548..587 | 564..603 | 175 | 97.5 | Plus |
CG6300-PA | 1614 | CG6300-RA | 403..479 | 419..495 | 160 | 88.3 | Plus |
CG11659-PA | 1641 | CG11659-RA | 403..479 | 419..495 | 160 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1789 | CG11407-RA | 63..959 | 17..913 | 4425 | 99.7 | Plus |
CG11659-RA | 1705 | CG11659-RA | 51..832 | 17..798 | 1180 | 77.4 | Plus |
CG6300-RA | 1724 | CG6300-RA | 51..799 | 17..765 | 1165 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19781507..19782022 | 157..672 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 19782075..19782315 | 673..913 | 1130 | 97.9 | Plus |
3R | 32079331 | 3R | 19772486..19772948 | 648..186 | 935 | 80.1 | Minus |
3R | 32079331 | 3R | 19776544..19777033 | 648..159 | 935 | 79.4 | Minus |
3R | 32079331 | 3R | 19781308..19781451 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 19773042..19773175 | 150..17 | 220 | 77.6 | Minus |
3R | 32079331 | 3R | 19777097..19777230 | 150..17 | 220 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:12:30 has no hits.
BS07668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:53 Download gff for
BS07668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:28 Download gff for
BS07668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:30:41 Download gff for
BS07668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 61..959 | 14..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:30 Download gff for
BS07668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 61..959 | 14..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:30 Download gff for
BS07668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19781306..19781451 | 14..160 | 99 | -> | Plus |
3R | 19781511..19782022 | 161..672 | 100 | -> | Plus |
3R | 19782075..19782315 | 673..913 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:30:41 Download gff for
BS07668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15607028..15607173 | 14..160 | 99 | -> | Plus |
arm_3R | 15607233..15607744 | 161..672 | 100 | -> | Plus |
arm_3R | 15607797..15608037 | 673..913 | 98 | | Plus |
BS07668.complete Sequence
1649 bp (1649 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635945
> BS07668.complete
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTCAA
GCGCCCGCGCACATGGCCATGATGGTCAACTCTCCCTCGTTCACCACCTC
CGACTTGTCGAGCTTAAGGTACTACCTTTTTGGAGGATCACGGGCTTCGG
TAGAGACACAGCATCGGATCAGGAGTCGCCTAAGCAAGGACTGCCTACAC
TTTGCCTACGGCTTTACAGAACTGGGCAGCATGGCCGCCTTGAACTTACA
CTTCGATGAGAAGCCGAATTCGGTGGGTCGTTTGGTGGCGGGACTTAAGC
TTAAAGTGATCTGTGAAAAGGGTGAATCCCTTGGGCCCGATGAGGTGGGT
GAGCTGTGCCTTTGGAATGGTCAATATTGGGCCGGGTACTATGGCAATCC
AGAGGAAACACACAAAATGAGAGACCACCATAACTGGTTCCACACAGGGG
ACCTCGGATACGTGGATGACGATGGCTTTATATACATTGTGGAGCGCAAG
AAGGACATGCTTAAGTTCCAGAACATCATGTACTATCCCAACGAAATCGA
GAGTGTCATCTCAAAGATGCCAGACGTGGTTGAAGTCTGTGTATTCGGGG
TGTGGAATGAGATCAACGGTGATGAGGCCACCGCGGCCGTGGTCAAGAAG
CGGGGTAGTGCTCTCACGGCCCAGGACATTGTGGACTATGTGGAGACCCA
TATCGATGCCAAGTACAAGCAGTTGAACGGAGGTGCCATCATCGTGGAGG
ATCTGGTGCGCAGTCCCAATGGCAAAACCAACCGCATGGCAAACAAAGCA
TTTTTCTTGGAGGCCAAAAGTTCAGCAAAATAAAAGCTTTCTAGACCAT
BS07668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1617 | CG11407-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
CG6300-RA | 1614 | CG6300-PA | 1..1580 | 17..1596 | 1585 | 73.4 | Plus |
CG11659-RA | 1641 | CG11659-PA | 1..1580 | 17..1596 | 1570 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1789 | CG11407-RA | 63..1682 | 17..1636 | 8100 | 100 | Plus |
CG6300-RA | 1724 | CG6300-RA | 51..1630 | 17..1596 | 1585 | 73.4 | Plus |
CG11659-RA | 1705 | CG11659-RA | 51..1630 | 17..1596 | 1570 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19782075..19783038 | 673..1636 | 4820 | 100 | Plus |
3R | 32079331 | 3R | 19781507..19782022 | 157..672 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 19772486..19772948 | 648..186 | 935 | 80.1 | Minus |
3R | 32079331 | 3R | 19776544..19777033 | 648..159 | 935 | 79.4 | Minus |
3R | 32079331 | 3R | 19781308..19781451 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 19771476..19772166 | 1596..906 | 575 | 72.2 | Minus |
3R | 32079331 | 3R | 19775534..19776450 | 1596..680 | 550 | 70.7 | Minus |
3L | 28110227 | 3L | 5872944..5873104 | 1232..1392 | 235 | 76.4 | Plus |
3R | 32079331 | 3R | 19773042..19773175 | 150..17 | 220 | 77.6 | Minus |
3R | 32079331 | 3R | 19777097..19777230 | 150..17 | 220 | 77.6 | Minus |
3L | 28110227 | 3L | 5874981..5875206 | 1232..1457 | 200 | 72.6 | Plus |
3R | 32079331 | 3R | 19780226..19780341 | 1284..1399 | 190 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:19:51 has no hits.
BS07668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:53 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 1..1617 | 17..1633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:45 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 55..1676 | 14..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:16 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 63..1677 | 17..1631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:54 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 55..1676 | 14..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:59 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 63..1677 | 17..1631 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:59 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19781308..19781451 | 17..160 | 100 | -> | Plus |
3R | 19781511..19782022 | 161..672 | 100 | -> | Plus |
3R | 19782075..19783033 | 673..1631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:16 Download gff for
BS07668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15607030..15607173 | 17..160 | 100 | -> | Plus |
arm_3R | 15607233..15607744 | 161..672 | 100 | -> | Plus |
arm_3R | 15607797..15608755 | 673..1631 | 100 | | Plus |
BS07668.pep Sequence
Translation from 16 to 1632
> BS07668.pep
MPYRPASYYDADRKIWSGDQLEYYFDPHLSIGEIIFNEMRRHPQLIAQIS
ATENTILTRAELQANAMHIASYMRSLGLLQMDIVGIIARNTTHISAVAYA
CFFNGIAFHSLNISYEQSTIEKLFSITRPNIIFCDGDEFEKVRSATAQLD
VKIITMRNHPSGSIRIDQVLSTPIEKNFQPVRLEQGNDQTLAILCSSGTT
GIPKAVTITNSRQILNSSHSLTTNDVQYSHSTLDWITGLLTTVTSGVFST
KRIIADNIFDPEFFMRLVEEHQITWIIQAPAHMAMMVNSPSFTTSDLSSL
RYYLFGGSRASVETQHRIRSRLSKDCLHFAYGFTELGSMAALNLHFDEKP
NSVGRLVAGLKLKVICEKGESLGPDEVGELCLWNGQYWAGYYGNPEETHK
MRDHHNWFHTGDLGYVDDDGFIYIVERKKDMLKFQNIMYYPNEIESVISK
MPDVVEVCVFGVWNEINGDEATAAVVKKRGSALTAQDIVDYVETHIDAKY
KQLNGGAIIVEDLVRSPNGKTNRMANKAFFLEAKSSAK*
BS07668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-PA | 538 | CG11407-PA | 1..538 | 1..538 | 2808 | 100 | Plus |
CG6300-PA | 537 | CG6300-PA | 1..535 | 1..535 | 2099 | 72.3 | Plus |
CG11659-PA | 546 | CG11659-PA | 1..535 | 1..535 | 2083 | 72 | Plus |
CG18586-PB | 545 | CG18586-PB | 17..540 | 9..532 | 1665 | 58.2 | Plus |
CG5568-PA | 545 | CG5568-PA | 10..539 | 2..531 | 1636 | 56.4 | Plus |