Clone BS07668 Report

Search the DGRC for BS07668

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG11407-RA
Protein status:BS07668.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07668.3prime Sequence

908 bp (857 high quality bases) assembled on 2006-01-06

> BS07668.3prime
ATGGTCTAGAAAGCTTTTATTTTGCTGAACTTTTGGCCTCCAAGAAAAAT
GCTTTGTTTGCCATGCGGTTGGTTTTGCCATTGGGACTGCGCACCAGATC
CTCCACGATGATGGCACCTCCGTTCAACTGCTTGTACTTGGCATCGATAT
GGGTCTCCACATAGTCCACAATGTCCTGGGCCGTGAGAGCACTACCCCGC
TTCTTGACCACGGCCGCGGTGGCCTCATCACCGTTGATCTCATTCCACAC
CCCGAATACACAGACTTCAACCACGTCTGGCATCTTTGAGATGACACTCT
CGATTTCGTTGGGATAGTACATGATGTTCTGGAACTTAAGCATGTCCTTC
TTGCGCTCCACAATGTATATAAAGCCATCGTCATCCACGTATCCGAGGTC
CCCTGTGTGGAACCAGTTATGGTGGTCTCTCATTTTGTGTGTTTCCTCTG
GATTGCCATAGTACCCGGCCCAATATTGACCATTCCAAAGGCACAGCTCA
CCCACCTCATCGGGCCCAAGGGATTCACCCTTTTCACAGATCACTTTAAG
CTTAAGTCCCGCCACCAAACGACCCACCGAATTCGGCTTCTCATCGAAGT
GTAAGTTCAAGGCGGCCATGCTGCCCAGTTCTGTAAAGCCGTAGGCAAAG
TGTAGGCAGTCCTTGCTTAGGCGACTCCTGATCCGATGCTGTGTCTCTAC
CGAAGCCCGTGATCCTCCAAAAAGGTAGTACCTTAAGCTCGACAAGTCGG
AGGTGGTGAACGAGGGAGAGTTGACCATCATGGCCATGTGCGCGGGCGCT
TGAATTATCCAAGTGATCTGGTGCTCTTCTACGAGTCGCATGAAGAACTC
CGGATCGAAGATATTATCTGCTATAATACGCTTGGTGCTGAATACCCCGG
ATGTACAG

BS07668.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-PA 1617 CG11407-RA 730..1617 904..17 4440 100 Minus
CG6300-PA 1614 CG6300-RA 1282..1355 352..279 145 87.8 Minus
CG11659-PA 1641 CG11659-RA 1282..1355 352..279 145 87.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1789 CG11407-RA 792..1682 904..14 4455 100 Minus
CG6300-RA 1724 CG6300-RA 940..1630 744..54 605 73.1 Minus
CG11659-RA 1705 CG11659-RA 940..1630 744..54 575 72.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19782148..19783038 904..14 4455 100 Minus
3R 32079331 3R 19771476..19772166 54..744 575 72.2 Plus
3R 32079331 3R 19775534..19776224 54..744 545 71.9 Plus
3L 28110227 3L 5872944..5873104 418..258 235 76.4 Minus
3L 28110227 3L 5874981..5875206 418..193 200 72.6 Minus
3R 32079331 3R 19780226..19780341 366..251 190 77.6 Minus
Blast to na_te.dros performed on 2015-02-01 07:55:10 has no hits.

BS07668.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:52 Download gff for BS07668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 725..1617 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:27 Download gff for BS07668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 725..1617 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:18:48 Download gff for BS07668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 787..1682 14..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:23 Download gff for BS07668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 787..1682 14..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:23 Download gff for BS07668.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19782143..19783038 14..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:18:48 Download gff for BS07668.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15607865..15608760 14..908 99   Minus

BS07668.5prime Sequence

913 bp (818 high quality bases) assembled on 2006-01-06

> BS07668.5prime
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTCAA
GCGCCCGCGCACATGGGCATGATGGTCAACTCTCCCCTCGTCACCACCTC
CGACTTGTCGAGC

BS07668.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-PA 1617 CG11407-RA 1..870 17..886 4325 99.8 Plus
CG6300-PA 1614 CG6300-RA 548..587 564..603 175 97.5 Plus
CG11659-PA 1641 CG11659-RA 548..587 564..603 175 97.5 Plus
CG6300-PA 1614 CG6300-RA 403..479 419..495 160 88.3 Plus
CG11659-PA 1641 CG11659-RA 403..479 419..495 160 88.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1789 CG11407-RA 63..959 17..913 4425 99.7 Plus
CG11659-RA 1705 CG11659-RA 51..832 17..798 1180 77.4 Plus
CG6300-RA 1724 CG6300-RA 51..799 17..765 1165 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19781507..19782022 157..672 2580 100 Plus
3R 32079331 3R 19782075..19782315 673..913 1130 97.9 Plus
3R 32079331 3R 19772486..19772948 648..186 935 80.1 Minus
3R 32079331 3R 19776544..19777033 648..159 935 79.4 Minus
3R 32079331 3R 19781308..19781451 17..160 720 100 Plus
3R 32079331 3R 19773042..19773175 150..17 220 77.6 Minus
3R 32079331 3R 19777097..19777230 150..17 220 77.6 Minus
Blast to na_te.dros performed on 2015-02-11 13:12:30 has no hits.

BS07668.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:19:53 Download gff for BS07668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:28 Download gff for BS07668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:30:41 Download gff for BS07668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 61..959 14..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:30 Download gff for BS07668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 61..959 14..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:30 Download gff for BS07668.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19781306..19781451 14..160 99 -> Plus
3R 19781511..19782022 161..672 100 -> Plus
3R 19782075..19782315 673..913 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:30:41 Download gff for BS07668.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15607028..15607173 14..160 99 -> Plus
arm_3R 15607233..15607744 161..672 100 -> Plus
arm_3R 15607797..15608037 673..913 98   Plus

BS07668.complete Sequence

1649 bp (1649 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635945

> BS07668.complete
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTCAA
GCGCCCGCGCACATGGCCATGATGGTCAACTCTCCCTCGTTCACCACCTC
CGACTTGTCGAGCTTAAGGTACTACCTTTTTGGAGGATCACGGGCTTCGG
TAGAGACACAGCATCGGATCAGGAGTCGCCTAAGCAAGGACTGCCTACAC
TTTGCCTACGGCTTTACAGAACTGGGCAGCATGGCCGCCTTGAACTTACA
CTTCGATGAGAAGCCGAATTCGGTGGGTCGTTTGGTGGCGGGACTTAAGC
TTAAAGTGATCTGTGAAAAGGGTGAATCCCTTGGGCCCGATGAGGTGGGT
GAGCTGTGCCTTTGGAATGGTCAATATTGGGCCGGGTACTATGGCAATCC
AGAGGAAACACACAAAATGAGAGACCACCATAACTGGTTCCACACAGGGG
ACCTCGGATACGTGGATGACGATGGCTTTATATACATTGTGGAGCGCAAG
AAGGACATGCTTAAGTTCCAGAACATCATGTACTATCCCAACGAAATCGA
GAGTGTCATCTCAAAGATGCCAGACGTGGTTGAAGTCTGTGTATTCGGGG
TGTGGAATGAGATCAACGGTGATGAGGCCACCGCGGCCGTGGTCAAGAAG
CGGGGTAGTGCTCTCACGGCCCAGGACATTGTGGACTATGTGGAGACCCA
TATCGATGCCAAGTACAAGCAGTTGAACGGAGGTGCCATCATCGTGGAGG
ATCTGGTGCGCAGTCCCAATGGCAAAACCAACCGCATGGCAAACAAAGCA
TTTTTCTTGGAGGCCAAAAGTTCAGCAAAATAAAAGCTTTCTAGACCAT

BS07668.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1617 CG11407-PA 1..1617 17..1633 8085 100 Plus
CG6300-RA 1614 CG6300-PA 1..1580 17..1596 1585 73.4 Plus
CG11659-RA 1641 CG11659-PA 1..1580 17..1596 1570 73.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1789 CG11407-RA 63..1682 17..1636 8100 100 Plus
CG6300-RA 1724 CG6300-RA 51..1630 17..1596 1585 73.4 Plus
CG11659-RA 1705 CG11659-RA 51..1630 17..1596 1570 73.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19782075..19783038 673..1636 4820 100 Plus
3R 32079331 3R 19781507..19782022 157..672 2580 100 Plus
3R 32079331 3R 19772486..19772948 648..186 935 80.1 Minus
3R 32079331 3R 19776544..19777033 648..159 935 79.4 Minus
3R 32079331 3R 19781308..19781451 17..160 720 100 Plus
3R 32079331 3R 19771476..19772166 1596..906 575 72.2 Minus
3R 32079331 3R 19775534..19776450 1596..680 550 70.7 Minus
3L 28110227 3L 5872944..5873104 1232..1392 235 76.4 Plus
3R 32079331 3R 19773042..19773175 150..17 220 77.6 Minus
3R 32079331 3R 19777097..19777230 150..17 220 77.6 Minus
3L 28110227 3L 5874981..5875206 1232..1457 200 72.6 Plus
3R 32079331 3R 19780226..19780341 1284..1399 190 77.6 Plus
Blast to na_te.dros performed on 2014-11-27 10:19:51 has no hits.

BS07668.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:53 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 1..1617 17..1633 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:45 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 55..1676 14..1636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:16 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 63..1677 17..1631 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:54 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 55..1676 14..1636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:59 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 63..1677 17..1631 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:59 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19781308..19781451 17..160 100 -> Plus
3R 19781511..19782022 161..672 100 -> Plus
3R 19782075..19783033 673..1631 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:16 Download gff for BS07668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15607030..15607173 17..160 100 -> Plus
arm_3R 15607233..15607744 161..672 100 -> Plus
arm_3R 15607797..15608755 673..1631 100   Plus

BS07668.pep Sequence

Translation from 16 to 1632

> BS07668.pep
MPYRPASYYDADRKIWSGDQLEYYFDPHLSIGEIIFNEMRRHPQLIAQIS
ATENTILTRAELQANAMHIASYMRSLGLLQMDIVGIIARNTTHISAVAYA
CFFNGIAFHSLNISYEQSTIEKLFSITRPNIIFCDGDEFEKVRSATAQLD
VKIITMRNHPSGSIRIDQVLSTPIEKNFQPVRLEQGNDQTLAILCSSGTT
GIPKAVTITNSRQILNSSHSLTTNDVQYSHSTLDWITGLLTTVTSGVFST
KRIIADNIFDPEFFMRLVEEHQITWIIQAPAHMAMMVNSPSFTTSDLSSL
RYYLFGGSRASVETQHRIRSRLSKDCLHFAYGFTELGSMAALNLHFDEKP
NSVGRLVAGLKLKVICEKGESLGPDEVGELCLWNGQYWAGYYGNPEETHK
MRDHHNWFHTGDLGYVDDDGFIYIVERKKDMLKFQNIMYYPNEIESVISK
MPDVVEVCVFGVWNEINGDEATAAVVKKRGSALTAQDIVDYVETHIDAKY
KQLNGGAIIVEDLVRSPNGKTNRMANKAFFLEAKSSAK*

BS07668.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-PA 538 CG11407-PA 1..538 1..538 2808 100 Plus
CG6300-PA 537 CG6300-PA 1..535 1..535 2099 72.3 Plus
CG11659-PA 546 CG11659-PA 1..535 1..535 2083 72 Plus
CG18586-PB 545 CG18586-PB 17..540 9..532 1665 58.2 Plus
CG5568-PA 545 CG5568-PA 10..539 2..531 1636 56.4 Plus