Clone Sequence Records
BS07672.3prime Sequence
834 bp (778 high quality bases) assembled on 2006-01-06
> BS07672.3prime
ATGGTCTAGAAAGCTTTTAACCGAATTTGGTGAAGTGTCGCAGGATGTGC
GACATGGCCGCGGGATTATCGGCAGGAACCATGTGACCAGCCCGGTTGAC
CCAAAACATGCTGAAGTTGCCATAGGTCTTCTCGTAACCCTCGAGAACTC
GATCTACGGTGATTCCCACGCGCGGAGAGACCTGGTAAGATGGCTTGGCG
GACCATTCCATTGCTTCGATCCAGTTGACGGCTCCCGGAGTGGCGCAAAT
CAGGTCCAGTCCTCCGGAGAACACGCCCACTTTTACGGTGGTGTTGTTCA
GCAGTTCACCCACAACATCCACAGCTGGCTTCATGAAATCGCCCATCAGC
TTGGTGAAGGTGGTGCCGCTCTGGGCGCCCCATTTCACTCCGGTGTTGAT
TCCGAGGGCCTCGGTCACGGGTCCAAGCATTAGATCCTCCAGCAATTTGT
CGCGGTCCTCATCCACATCGAATTTCACGAGGGTGCGATACATGACCTCC
TCCGGAGTCATGGCAGCTCTGGACATCAACCTGTACTGATCACCCAATGT
TGGGGTCTCCACGTTATAGAAGTCCACTCCCTTGGACTCGCGCAGCACCA
CTGACTGGGTGGAGCTCCACTGCAAAGTGGCCTGTGTCCACTTCTCGCGG
TCAACATAGTCCTTAGTCTTCAGGGCCGAAGCTTCAATCTTGTCATGGCC
ATCCTGATCCACGATTCCCAACTGCAGCAGGAAGGGAGCCCACGAGAGCA
CAGAGTCTATGGGTGAGGTCCAGGGATCTCCCCAGGCCACCGAAACAAAG
TTGCTCTCGATCTCACCGCGCTTGATGGCGTAAT
BS07672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-PA | 1341 | CG3344-RA | 524..1341 | 834..17 | 4065 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1480 | CG3344-RA | 614..1432 | 834..16 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 686581..686916 | 499..834 | 1665 | 99.7 | Plus |
3L | 28110227 | 3L | 685990..686287 | 16..313 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 686342..686528 | 313..499 | 935 | 100 | Plus |
3L | 28110227 | 3L | 689408..689501 | 739..832 | 200 | 80.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:25:36 has no hits.
BS07672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:02 Download gff for
BS07672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 524..1341 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:39 Download gff for
BS07672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 524..1341 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:59 Download gff for
BS07672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 614..1432 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:24 Download gff for
BS07672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 614..1432 | 16..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:24 Download gff for
BS07672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 686342..686527 | 313..498 | 100 | <- | Plus |
3L | 685990..686286 | 16..312 | 100 | <- | Plus |
3L | 686581..686916 | 499..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:59 Download gff for
BS07672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 685990..686286 | 16..312 | 100 | <- | Plus |
arm_3L | 686342..686527 | 313..498 | 100 | <- | Plus |
arm_3L | 686581..686916 | 499..834 | 99 | | Plus |
BS07672.5prime Sequence
869 bp (812 high quality bases) assembled on 2006-01-06
> BS07672.5prime
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGTGGAGACCCAACATTGGGTGATCAGTACAGGTTGATGT
CCAGAGCTGCCATGACTCC
BS07672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-PA | 1341 | CG3344-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
CG3344-PA | 1341 | CG3344-RA | 804..854 | 819..869 | 255 | 100 | Plus |
CG32483-PA | 1320 | CG32483-RA | 112..152 | 143..183 | 205 | 100 | Plus |
CG32483-PA | 1320 | CG32483-RA | 178..233 | 209..264 | 155 | 91 | Plus |
CG32483-PA | 1320 | CG32483-RA | 442..494 | 473..525 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1480 | CG3344-RA | 89..944 | 15..869 | 4255 | 99.9 | Plus |
CG32483-RA | 1382 | CG32483-RA | 70..604 | 101..635 | 890 | 78.2 | Plus |
CG31821-RB | 1423 | CG31821-RB | 94..251 | 86..243 | 235 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 686586..687373 | 869..83 | 3890 | 99.9 | Minus |
3L | 28110227 | 3L | 689408..689942 | 635..101 | 890 | 77.8 | Minus |
3L | 28110227 | 3L | 687802..687870 | 83..15 | 345 | 100 | Minus |
2L | 23513712 | 2L | 15902160..15902317 | 243..86 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:13:25 has no hits.
BS07672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:03 Download gff for
BS07672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 1..854 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:40 Download gff for
BS07672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 1..854 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:58 Download gff for
BS07672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 89..944 | 15..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:56 Download gff for
BS07672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 89..944 | 15..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:56 Download gff for
BS07672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 686586..687372 | 84..869 | 99 | <- | Minus |
3L | 687802..687870 | 15..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:58 Download gff for
BS07672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 686586..687372 | 84..869 | 99 | <- | Minus |
arm_3L | 687802..687870 | 15..83 | 100 | | Minus |
BS07672.complete Sequence
1373 bp (1373 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635946
> BS07672.complete
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGTGGAGACCCCAACATTGGGTGATCAGTACAGGTTGATG
TCCAGAGCTGCCATGACTCCGGAGGAGGTCATGTATCGCACCCTCGTGAA
ATTCGATGTGGATGAGGACCGCGACAAATTGCTGGAGGATCTAATGCTTG
GACCCGTGACCGAGGCCCTCGGAATCAACACCGGAGTGAAATGGGGCGCC
CAGAGCGGCACCACCTTCACCAAGCTGATGGGCGATTTCATGAAGCCAGC
TGTGGATGTTGTGGGTGAACTGCTGAACAACACCACCGTAAAAGTGGGCG
TGTTCTCCGGAGGACTGGACCTGATTTGCGCCACTCCGGGAGCCGTCAAC
TGGATCGAAGCAATGGAATGGTCCGCCAAGCCATCTTACCAGGTCTCTCC
GCGCGTGGGAATCACCGTAGATCGAGTTCTCGAGGGTTACGAGAAGACCT
ATGGCAACTTCAGCATGTTTTGGGTCAACCGGGCTGGTCACATGGTTCCT
GCCGATAATCCCGCGGCCATGTCGCACATCCTGCGACACTTCACCAAATT
CGGTTAAAAGCTTTCTAGACCAT
BS07672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1341 | CG3344-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
CG32483-RA | 1320 | CG32483-PA | 70..604 | 101..635 | 890 | 77.8 | Plus |
CG31821-RB | 1284 | CG31821-PB | 61..218 | 86..243 | 235 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1480 | CG3344-RA | 89..1432 | 15..1358 | 6720 | 100 | Plus |
CG32483-RA | 1382 | CG32483-RA | 70..604 | 101..635 | 890 | 77.8 | Plus |
CG31821-RB | 1423 | CG31821-RB | 94..251 | 86..243 | 235 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 686581..687373 | 875..83 | 3965 | 100 | Minus |
3L | 28110227 | 3L | 685990..686287 | 1358..1061 | 1490 | 100 | Minus |
3L | 28110227 | 3L | 686342..686528 | 1061..875 | 935 | 100 | Minus |
3L | 28110227 | 3L | 689408..689942 | 635..101 | 890 | 77.8 | Minus |
3L | 28110227 | 3L | 687802..687870 | 83..15 | 345 | 100 | Minus |
2L | 23513712 | 2L | 15902160..15902317 | 243..86 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:23:49 has no hits.
BS07672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:55 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:47 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 79..1422 | 15..1358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:19 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 91..1429 | 17..1355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:55 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 79..1422 | 15..1358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:35 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 91..1429 | 17..1355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:35 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 686342..686527 | 876..1061 | 100 | <- | Minus |
3L | 685993..686286 | 1062..1355 | 100 | <- | Minus |
3L | 686581..687372 | 84..875 | 100 | <- | Minus |
3L | 687802..687868 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:19 Download gff for
BS07672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 686342..686527 | 876..1061 | 100 | <- | Minus |
arm_3L | 685993..686286 | 1062..1355 | 100 | <- | Minus |
arm_3L | 686581..687372 | 84..875 | 100 | <- | Minus |
arm_3L | 687802..687868 | 17..83 | 100 | | Minus |
BS07672.pep Sequence
Translation from 16 to 1356
> BS07672.pep
MAGRAIIALLALLGFAGLASVDARKGYGPGDQDWGFVDVRTGAHMFYWLY
YTTANVSSYTERPLAIWLQGGPGASSTGYGNFEELGPLKLDGSYRDWTWV
KDMNVMFIDNPVGSGFSYVDGSSYYTTNNKQIALDLVELMKGFYTNHPEF
KTVPLHIFCESYGGKMAPEFALELDYAIKRGEIESNFVSVALGDPWTSPI
DSVLSWAPFLLQLGIVDQDGHDKIEASALKTKDYVDREKWTQATLQWSST
QSVVLRESKGVDFYNVETPTLGDQYRLMSRAAMTPEEVMYRTLVKFDVDE
DRDKLLEDLMLGPVTEALGINTGVKWGAQSGTTFTKLMGDFMKPAVDVVG
ELLNNTTVKVGVFSGGLDLICATPGAVNWIEAMEWSAKPSYQVSPRVGIT
VDRVLEGYEKTYGNFSMFWVNRAGHMVPADNPAAMSHILRHFTKFG*
BS07672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-PA | 446 | CG3344-PA | 1..446 | 1..446 | 2372 | 100 | Plus |
CG32483-PA | 439 | CG32483-PA | 5..439 | 6..446 | 1663 | 70.3 | Plus |
CG31823-PA | 427 | CG31823-PA | 14..427 | 11..446 | 1112 | 49.8 | Plus |
CG31821-PB | 427 | CG31821-PB | 7..421 | 5..445 | 909 | 42.8 | Plus |
CG31821-PA | 427 | CG31821-PA | 7..421 | 5..445 | 909 | 42.8 | Plus |