Clone BS07672 Report

Search the DGRC for BS07672

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG3344-RA
Protein status:BS07672.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07672.3prime Sequence

834 bp (778 high quality bases) assembled on 2006-01-06

> BS07672.3prime
ATGGTCTAGAAAGCTTTTAACCGAATTTGGTGAAGTGTCGCAGGATGTGC
GACATGGCCGCGGGATTATCGGCAGGAACCATGTGACCAGCCCGGTTGAC
CCAAAACATGCTGAAGTTGCCATAGGTCTTCTCGTAACCCTCGAGAACTC
GATCTACGGTGATTCCCACGCGCGGAGAGACCTGGTAAGATGGCTTGGCG
GACCATTCCATTGCTTCGATCCAGTTGACGGCTCCCGGAGTGGCGCAAAT
CAGGTCCAGTCCTCCGGAGAACACGCCCACTTTTACGGTGGTGTTGTTCA
GCAGTTCACCCACAACATCCACAGCTGGCTTCATGAAATCGCCCATCAGC
TTGGTGAAGGTGGTGCCGCTCTGGGCGCCCCATTTCACTCCGGTGTTGAT
TCCGAGGGCCTCGGTCACGGGTCCAAGCATTAGATCCTCCAGCAATTTGT
CGCGGTCCTCATCCACATCGAATTTCACGAGGGTGCGATACATGACCTCC
TCCGGAGTCATGGCAGCTCTGGACATCAACCTGTACTGATCACCCAATGT
TGGGGTCTCCACGTTATAGAAGTCCACTCCCTTGGACTCGCGCAGCACCA
CTGACTGGGTGGAGCTCCACTGCAAAGTGGCCTGTGTCCACTTCTCGCGG
TCAACATAGTCCTTAGTCTTCAGGGCCGAAGCTTCAATCTTGTCATGGCC
ATCCTGATCCACGATTCCCAACTGCAGCAGGAAGGGAGCCCACGAGAGCA
CAGAGTCTATGGGTGAGGTCCAGGGATCTCCCCAGGCCACCGAAACAAAG
TTGCTCTCGATCTCACCGCGCTTGATGGCGTAAT

BS07672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 1341 CG3344-RA 524..1341 834..17 4065 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1480 CG3344-RA 614..1432 834..16 4080 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686581..686916 499..834 1665 99.7 Plus
3L 28110227 3L 685990..686287 16..313 1490 100 Plus
3L 28110227 3L 686342..686528 313..499 935 100 Plus
3L 28110227 3L 689408..689501 739..832 200 80.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:25:36 has no hits.

BS07672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:02 Download gff for BS07672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 524..1341 17..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:39 Download gff for BS07672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 524..1341 17..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:59 Download gff for BS07672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 614..1432 16..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:24 Download gff for BS07672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 614..1432 16..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:24 Download gff for BS07672.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 686342..686527 313..498 100 <- Plus
3L 685990..686286 16..312 100 <- Plus
3L 686581..686916 499..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:59 Download gff for BS07672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 685990..686286 16..312 100 <- Plus
arm_3L 686342..686527 313..498 100 <- Plus
arm_3L 686581..686916 499..834 99   Plus

BS07672.5prime Sequence

869 bp (812 high quality bases) assembled on 2006-01-06

> BS07672.5prime
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGTGGAGACCCAACATTGGGTGATCAGTACAGGTTGATGT
CCAGAGCTGCCATGACTCC

BS07672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 1341 CG3344-RA 1..805 17..821 4025 100 Plus
CG3344-PA 1341 CG3344-RA 804..854 819..869 255 100 Plus
CG32483-PA 1320 CG32483-RA 112..152 143..183 205 100 Plus
CG32483-PA 1320 CG32483-RA 178..233 209..264 155 91 Plus
CG32483-PA 1320 CG32483-RA 442..494 473..525 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1480 CG3344-RA 89..944 15..869 4255 99.9 Plus
CG32483-RA 1382 CG32483-RA 70..604 101..635 890 78.2 Plus
CG31821-RB 1423 CG31821-RB 94..251 86..243 235 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686586..687373 869..83 3890 99.9 Minus
3L 28110227 3L 689408..689942 635..101 890 77.8 Minus
3L 28110227 3L 687802..687870 83..15 345 100 Minus
2L 23513712 2L 15902160..15902317 243..86 235 76.6 Minus
Blast to na_te.dros performed on 2015-02-12 12:13:25 has no hits.

BS07672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:03 Download gff for BS07672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 1..854 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:40 Download gff for BS07672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 1..854 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:58 Download gff for BS07672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 89..944 15..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:56 Download gff for BS07672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 89..944 15..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:56 Download gff for BS07672.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 686586..687372 84..869 99 <- Minus
3L 687802..687870 15..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:58 Download gff for BS07672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 686586..687372 84..869 99 <- Minus
arm_3L 687802..687870 15..83 100   Minus

BS07672.complete Sequence

1373 bp (1373 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635946

> BS07672.complete
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGTGGAGACCCCAACATTGGGTGATCAGTACAGGTTGATG
TCCAGAGCTGCCATGACTCCGGAGGAGGTCATGTATCGCACCCTCGTGAA
ATTCGATGTGGATGAGGACCGCGACAAATTGCTGGAGGATCTAATGCTTG
GACCCGTGACCGAGGCCCTCGGAATCAACACCGGAGTGAAATGGGGCGCC
CAGAGCGGCACCACCTTCACCAAGCTGATGGGCGATTTCATGAAGCCAGC
TGTGGATGTTGTGGGTGAACTGCTGAACAACACCACCGTAAAAGTGGGCG
TGTTCTCCGGAGGACTGGACCTGATTTGCGCCACTCCGGGAGCCGTCAAC
TGGATCGAAGCAATGGAATGGTCCGCCAAGCCATCTTACCAGGTCTCTCC
GCGCGTGGGAATCACCGTAGATCGAGTTCTCGAGGGTTACGAGAAGACCT
ATGGCAACTTCAGCATGTTTTGGGTCAACCGGGCTGGTCACATGGTTCCT
GCCGATAATCCCGCGGCCATGTCGCACATCCTGCGACACTTCACCAAATT
CGGTTAAAAGCTTTCTAGACCAT

BS07672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1341 CG3344-PA 1..1341 17..1357 6705 100 Plus
CG32483-RA 1320 CG32483-PA 70..604 101..635 890 77.8 Plus
CG31821-RB 1284 CG31821-PB 61..218 86..243 235 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1480 CG3344-RA 89..1432 15..1358 6720 100 Plus
CG32483-RA 1382 CG32483-RA 70..604 101..635 890 77.8 Plus
CG31821-RB 1423 CG31821-RB 94..251 86..243 235 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686581..687373 875..83 3965 100 Minus
3L 28110227 3L 685990..686287 1358..1061 1490 100 Minus
3L 28110227 3L 686342..686528 1061..875 935 100 Minus
3L 28110227 3L 689408..689942 635..101 890 77.8 Minus
3L 28110227 3L 687802..687870 83..15 345 100 Minus
2L 23513712 2L 15902160..15902317 243..86 235 76.6 Minus
Blast to na_te.dros performed on 2014-11-27 08:23:49 has no hits.

BS07672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:55 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:47 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 79..1422 15..1358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:19 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 91..1429 17..1355 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:55 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 79..1422 15..1358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:35 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 91..1429 17..1355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:35 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
3L 686342..686527 876..1061 100 <- Minus
3L 685993..686286 1062..1355 100 <- Minus
3L 686581..687372 84..875 100 <- Minus
3L 687802..687868 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:19 Download gff for BS07672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 686342..686527 876..1061 100 <- Minus
arm_3L 685993..686286 1062..1355 100 <- Minus
arm_3L 686581..687372 84..875 100 <- Minus
arm_3L 687802..687868 17..83 100   Minus

BS07672.pep Sequence

Translation from 16 to 1356

> BS07672.pep
MAGRAIIALLALLGFAGLASVDARKGYGPGDQDWGFVDVRTGAHMFYWLY
YTTANVSSYTERPLAIWLQGGPGASSTGYGNFEELGPLKLDGSYRDWTWV
KDMNVMFIDNPVGSGFSYVDGSSYYTTNNKQIALDLVELMKGFYTNHPEF
KTVPLHIFCESYGGKMAPEFALELDYAIKRGEIESNFVSVALGDPWTSPI
DSVLSWAPFLLQLGIVDQDGHDKIEASALKTKDYVDREKWTQATLQWSST
QSVVLRESKGVDFYNVETPTLGDQYRLMSRAAMTPEEVMYRTLVKFDVDE
DRDKLLEDLMLGPVTEALGINTGVKWGAQSGTTFTKLMGDFMKPAVDVVG
ELLNNTTVKVGVFSGGLDLICATPGAVNWIEAMEWSAKPSYQVSPRVGIT
VDRVLEGYEKTYGNFSMFWVNRAGHMVPADNPAAMSHILRHFTKFG*

BS07672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 446 CG3344-PA 1..446 1..446 2372 100 Plus
CG32483-PA 439 CG32483-PA 5..439 6..446 1663 70.3 Plus
CG31823-PA 427 CG31823-PA 14..427 11..446 1112 49.8 Plus
CG31821-PB 427 CG31821-PB 7..421 5..445 909 42.8 Plus
CG31821-PA 427 CG31821-PA 7..421 5..445 909 42.8 Plus