Clone BS07674 Report

Search the DGRC for BS07674

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptPde8-RC
Protein status:BS07674.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07674.3prime Sequence

915 bp (795 high quality bases) assembled on 2006-01-06

> BS07674.3prime
ATGGTCTAGAAAGCTTCTATTTGGAGTTGGCCATCTTGCCCACCGGTGGC
TGCTTGGCCATGATCTCCGCCAGCGTGTTGACGCCCTGCTCGTCGTACTT
CTTCCATTGCGAGTAGTTGATCTGCATGTAGGTGATCAGCTGTGGCATGT
CGATGAAGCTCTCCCAGGCGTGCATCATGTCCTGTATGATGTATTCGATG
AAGCCGATCTGGCTCTTTGGTATGCTGCAGGTGGCCCGATCGAACATCGG
CATCACGATGGGCAGGTGGCGCTGCTTCTCCTCGTCCGTCTGCATGAAGT
ACTCCTCGGCTATCCGGCGGGCCCACTCGATGCAGAATTGCATCGGCCTG
GCGGGATTGCTCACATCGGCCACTTTGATCAGCATGCGACGCATGAGTAT
GGACGTCTCCTCATCCGTTTGGGGATTGTGATCACGCGGCTCCTCGCCGC
CAAAAACGCTCACGAACTTGGCCAGGTGCTCAAAGTGGCGGGTCATCTCG
GTGGCCAGGATCATGTCAATGATGGTGCTGCGTGCCGACTTGTATGTCTC
CTTGTCCAGGTTCTTGAAAATGTTGATCTTGTCGTCGCCCAGTGTCAGCT
TAAAGGTGATTGCCGCGTGATGGTTCTCCAGCACAGTCAGATCATTGTAT
AGAACGGCCAGGGCGTCGTTGGAGTTGCACAAGAAGGCGGATGAGCGACC
AGGATGATCCACATCGTGGGCGGCGGCGGCGATCAAGGCAGTCGCCTCCT
CCATGCGATCCATCACCAGCATATCCTTGTTGGTTAGTTGGGTGATGAAA
GCGCCAGTGGCCTGCATCACATCCGCGGCATGGGTGCTGTTGTGATATGT
GTTGCTCTTTGCGTAGTGGGCTTCAATCACTGCCAACCACGCCTTGCACA
CGTTCTCATCGATGT

BS07674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5411-PC 1203 Pde8-RC 361..1203 859..17 4215 100 Minus
CG5411-PD 2418 Pde8-RD 1576..2418 859..17 4215 100 Minus
CG5411-PE 2718 Pde8-RE 1876..2718 859..17 4215 100 Minus
CG5411-PB 2715 Pde8-RB 1873..2715 859..17 4215 100 Minus
CG5411-PA 2745 Pde8-RA 1903..2745 859..17 4215 100 Minus
CG5411-PC 1203 Pde8-RC 305..357 915..863 265 100 Minus
CG5411-PD 2418 Pde8-RD 1520..1572 915..863 265 100 Minus
CG5411-PE 2718 Pde8-RE 1820..1872 915..863 265 100 Minus
CG5411-PB 2715 Pde8-RB 1817..1869 915..863 265 100 Minus
CG5411-PA 2745 Pde8-RA 1847..1899 915..863 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 4895 CG45019-RO 2669..3567 915..17 4450 99.8 Minus
Pde8-RK 5389 CG45019-RK 2336..3234 915..17 4450 99.8 Minus
Pde8-RI 5562 CG45019-RI 2509..3407 915..17 4450 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23678218..23678489 430..159 1360 100 Minus
2R 25286936 2R 23677713..23677938 813..588 1130 100 Minus
2R 25286936 2R 23678001..23678159 589..431 795 100 Minus
2R 25286936 2R 23678547..23678689 159..17 715 100 Minus
2R 25286936 2R 23677550..23677654 915..811 480 97.1 Minus
Blast to na_te.dros performed on 2015-02-12 00:23:36 has no hits.

BS07674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:06 Download gff for BS07674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PB 1817..2715 17..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:45 Download gff for BS07674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PD 1520..2418 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:34 Download gff for BS07674.3prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 2622..3520 17..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:55 Download gff for BS07674.3prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 2509..3407 17..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:55 Download gff for BS07674.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23678218..23678488 160..430 100 -> Minus
2R 23678547..23678689 17..159 100   Minus
2R 23677550..23677653 812..915 98 -> Minus
2R 23677715..23677937 589..811 100 -> Minus
2R 23678002..23678159 431..588 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:34 Download gff for BS07674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19565073..19565176 812..915 98 -> Minus
arm_2R 19565238..19565460 589..811 100 -> Minus
arm_2R 19565525..19565682 431..588 100 -> Minus
arm_2R 19565741..19566011 160..430 100 -> Minus
arm_2R 19566070..19566212 17..159 100   Minus

BS07674.5prime Sequence

856 bp (822 high quality bases) assembled on 2006-01-06

> BS07674.5prime
GAAGTTATCAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCA
CCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGC
CGCAGCTCGAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGC
CGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTAC
TTGACGAATCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATC
ACCGACTACCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTT
CGACGTCTTTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGT
TGGCAGTGATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGC
ACCCATGCCGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACT
AACCAACAAGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCT
TGATCGCCGCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCC
TTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGAC
TGTGCTGGAGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCG
ACGACAAGATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCG
GCACGCAGCACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCA
CTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGC
GTGATCACAATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGC
ATGCTG

BS07674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5411-PC 1203 Pde8-RC 1..840 17..856 4200 100 Plus
CG5411-PD 2418 Pde8-RD 1216..2055 17..856 4200 100 Plus
CG5411-PE 2718 Pde8-RE 1516..2355 17..856 4200 100 Plus
CG5411-PB 2715 Pde8-RB 1513..2352 17..856 4200 100 Plus
CG5411-PA 2745 Pde8-RA 1543..2382 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 4895 CG45019-RO 2365..3204 17..856 4200 100 Plus
Pde8-RK 5389 CG45019-RK 2032..2871 17..856 4200 100 Plus
Pde8-RI 5562 CG45019-RI 2205..3044 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23677403..23677654 174..425 1260 100 Plus
2R 25286936 2R 23677713..23677938 423..648 1130 100 Plus
2R 25286936 2R 23678001..23678159 647..805 795 100 Plus
2R 25286936 2R 23677248..23677347 76..175 500 100 Plus
2R 25286936 2R 23677129..23677189 17..77 305 100 Plus
2R 25286936 2R 23678218..23678268 806..856 255 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:25:31 has no hits.

BS07674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:07 Download gff for BS07674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PA 1531..2382 6..856 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:47 Download gff for BS07674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PA 1531..2382 6..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:40 Download gff for BS07674.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 2306..3157 6..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:39:40 Download gff for BS07674.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 2193..3044 6..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:39:40 Download gff for BS07674.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23678002..23678159 648..805 100 -> Plus
2R 23678218..23678268 806..856 100   Plus
2R 23677117..23677188 6..76 94 -> Plus
2R 23677249..23677347 77..175 100 -> Plus
2R 23677405..23677653 176..424 100 -> Plus
2R 23677715..23677937 425..647 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:40 Download gff for BS07674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19564640..19564711 6..76 94 -> Plus
arm_2R 19564772..19564870 77..175 100 -> Plus
arm_2R 19564928..19565176 176..424 100 -> Plus
arm_2R 19565238..19565460 425..647 100 -> Plus
arm_2R 19565525..19565682 648..805 100 -> Plus
arm_2R 19565741..19565791 806..856 100   Plus

BS07674.complete Sequence

1235 bp (1235 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635947

> BS07674.complete
GAAGTTATCAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCA
CCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGC
CGCAGCTCGAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGC
CGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTAC
TTGACGAATCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATC
ACCGACTACCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTT
CGACGTCTTTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGT
TGGCAGTGATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGC
ACCCATGCCGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACT
AACCAACAAGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCT
TGATCGCCGCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCC
TTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGAC
TGTGCTGGAGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCG
ACGACAAGATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCG
GCACGCAGCACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCA
CTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGC
GTGATCACAATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGC
ATGCTGATCAAAGTGGCCGATGTGAGCAATCCCGCCAGGCCGATGCAATT
CTGCATCGAGTGGGCCCGCCGGATAGCCGAGGAGTACTTCATGCAGACGG
ACGAGGAGAAGCAGCGCCACCTGCCCATCGTGATGCCGATGTTCGATCGG
GCCACCTGCAGCATACCAAAGAGCCAGATCGGCTTCATCGAATACATCAT
ACAGGACATGATGCACGCCTGGGAGAGCTTCATCGACATGCCACAGCTGA
TCACCTACATGCAGATCAACTACTCGCAATGGAAGAAGTACGACGAGCAG
GGCGTCAACACGCTGGCGGAGATCATGGCCAAGCAGCCACCGGTGGGCAA
GATGGCCAACTCCAAATAGAAGCTTTCTAGACCAT

BS07674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 3153 CG45019-PO 1951..3153 17..1219 6015 100 Plus
Pde8-RK 2745 CG45019-PK 1543..2745 17..1219 6015 100 Plus
Pde8-RI 2745 CG45019-PI 1543..2745 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 4895 CG45019-RO 2365..3567 17..1219 6015 100 Plus
Pde8-RK 5389 CG45019-RK 2032..3234 17..1219 6015 100 Plus
Pde8-RI 5562 CG45019-RI 2205..3407 17..1219 6015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23678218..23678489 806..1077 1360 100 Plus
2R 25286936 2R 23677403..23677654 174..425 1260 100 Plus
2R 25286936 2R 23677713..23677938 423..648 1130 100 Plus
2R 25286936 2R 23678001..23678159 647..805 795 100 Plus
2R 25286936 2R 23678547..23678689 1077..1219 715 100 Plus
2R 25286936 2R 23677248..23677347 76..175 500 100 Plus
2R 25286936 2R 23677129..23677189 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:04:46 has no hits.

BS07674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:56 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1504..2718 6..1219 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:49 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 2020..3234 6..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:24 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 2318..3514 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:56 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 2020..3234 6..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:03 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 2205..3401 17..1213 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:03 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23678218..23678488 806..1076 100 -> Plus
2R 23677405..23677653 176..424 100 -> Plus
2R 23677715..23677937 425..647 100 -> Plus
2R 23678002..23678159 648..805 100 -> Plus
2R 23678547..23678683 1077..1213 100   Plus
2R 23677129..23677188 17..76 100 -> Plus
2R 23677249..23677347 77..175 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:24 Download gff for BS07674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19564652..19564711 17..76 100 -> Plus
arm_2R 19564772..19564870 77..175 100 -> Plus
arm_2R 19564928..19565176 176..424 100 -> Plus
arm_2R 19565238..19565460 425..647 100 -> Plus
arm_2R 19565525..19565682 648..805 100 -> Plus
arm_2R 19565741..19566011 806..1076 100 -> Plus
arm_2R 19566070..19566206 1077..1213 100   Plus

BS07674.pep Sequence

Translation from 16 to 1218

> BS07674.pep
MKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTAAIVPA
KMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRFDVFAT
LNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDM
LVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENH
HAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHFEHLA
KFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQFCIEWA
RRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYIIQDMMH
AWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEIMAKQPPVGKMANSK
*

BS07674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-PC 400 CG45019-PC 1..400 1..400 2074 100 Plus
Pde8-PD 805 CG45019-PD 406..805 1..400 2074 100 Plus
Pde8-PB 904 CG45019-PB 505..904 1..400 2074 100 Plus
Pde8-PE 905 CG45019-PE 506..905 1..400 2074 100 Plus
Pde8-PK 914 CG45019-PK 515..914 1..400 2074 100 Plus