Clone Sequence Records
BS07675.3prime Sequence
903 bp (818 high quality bases) assembled on 2006-01-06
> BS07675.3prime
ATGGTCTAGAAAGCTTTCAGTCGTACTTGAGGTTGCCCATGCAAATGTAC
TTGATGTCCACATAGTCGTCGATACCGTGTTTGGAACCCTCCCGTCCGAC
ACCGGACTCCTTGACGCCACCAAACGGAGCCTCTGCTGCGGAGATGATGC
CTTCGTTGACGCCGACCATGCCAACCTCCAGTCGCTTGGCCACCCGGAAC
ACCTGCTGCAGATTCTCGCTGTAGAAGTAACCGGCCAGGCCTCTCCTGGT
GTCGTTTGCCTTCTTTACCGCTTCTTCTTCGTCTCGGAACCGTATGATGG
AGACCACTGGACCAAAGACCTCCTCCGAGTAGAGTTGCGCCGAGGGTGGC
ACATCTGTGACAATTGTGGGTGCGTAGAAAAGGGATCCCTTGTCGGGCAA
CGGCTGTCCGCCCAGAATAATGTTCGCCTTCTTCGACCTGGCGTCCTCCA
CAAAGCCACTGACTTTGTTGAACTGCATCTCGTTGATCAGTGGTCCGATT
TGCACATCGCAACCCTGACCATCTCCGATCTTCAAAGCTTCCACGCGTTT
TTTCAGCTGCCCAACAAACTTATCGTAGACGCTGTCCTGGACAAAGAATC
TATTGGCGGAGACGCAGGTCTGTCCGCAATTCCTAAACTTCGAGGCCATG
GCGCCATCCACTGCTTTTTCAATGTCCGCCGAATCGAAGACAATGAACGG
AGCATTGCCGCCGAGCTCGAGACAAATCCTTTTGATGCCATCAGCAGAGT
TCCGGAACAGCAGTTTGCCCACCTCAGTGGAGCCCGTGAAGGATATACCC
CTAACATCGGGACTCTTGCAGAAGAGATCGCCAATGGGAGCCGCTTTGTT
TGTGGTGACACATTTATCACACCCTTTGGATGCCAGCGTCCACTGCCAAT
TTG
BS07675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4685-PA | 1530 | CG4685-RA | 688..1530 | 859..17 | 4215 | 100 | Minus |
| CG4685-PB | 1530 | CG4685-RB | 688..1530 | 859..17 | 4215 | 100 | Minus |
| CG4685-PC | 1530 | CG4685-RC | 688..1530 | 859..17 | 4215 | 100 | Minus |
| CG4685-PD | 1530 | CG4685-RD | 688..1530 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 832..1721 | 903..16 | 4400 | 99.8 | Minus |
| Ssadh-RD | 1865 | CG4685-RD | 850..1739 | 903..16 | 4400 | 99.8 | Minus |
| Ssadh-RC | 1858 | CG4685-RC | 843..1732 | 903..16 | 4400 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25624931..25625820 | 16..903 | 4350 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:27:55 has no hits.
BS07675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:08 Download gff for
BS07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PB | 642..1530 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:48 Download gff for
BS07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PD | 642..1530 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:51:38 Download gff for
BS07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 843..1732 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:18 Download gff for
BS07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 843..1732 | 16..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:18 Download gff for
BS07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25624931..25625820 | 16..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:51:38 Download gff for
BS07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21450653..21451542 | 16..903 | 99 | | Plus |
BS07675.5prime Sequence
902 bp (807 high quality bases) assembled on 2006-01-06
> BS07675.5prime
GAAGTTATCAGTCGACATGTGGCGACAGCTCAGCGGAGTCGCACGAACAG
GAAGCAGCCTAAGCCTCTGCAGAATGCGAGGATTCTCGGCACTGGTGCAG
GATAAGGCCCTGGTGGATGGCGCCTGGGTGGATTCCAGCAATGCAAAGGC
GACCTTCGAGGTGCGGAATCCTGCCAATGGTGCTGTCATCGGCAAAGTGC
CCAACATGACGGTGGCGGATGCCCAGAAGGCCATAGACGCCGCTAAGCAG
GCGTACGAGTCCAAGGAGTGGCGATCCCTGACCGCCAAGGATCGGTCCAA
CCTGCTCAAGAAGTGGCACAAACTGATCGAGCAGCACTCGCAGGAGATAG
CCGAGATAATGACGGCCGAGTCGGGCAAGCCGATCAACGAGTCGAAGGGG
GAGGTGGCCTACGGAAACGCCTTCGTCGAGTGGTTTGCAGAGGAGGCCCG
TCGCATCTACGGCGAAATTGTGCCCAGTGCATCGCCCAATCGCGAAATCA
TAGTAATGAAGCAGCCCATTGGGGTGGCGGCGCTGATTACGCCCTGGAAC
TTCCCGATGGCTATGATTACGAGGAAAGCAGGAGCCGCCCTGGCCGCAGG
ATGTACGGTCGTGGTGAAACCTTCAGAAGACACTCCTCTTACTGCCCTGG
CTGTGGCCAAATTGGCAGTGGACGCTGGCATTCCAAAGGGTGTGATAAAT
GTGGTCACCACAAACAAAGCGGCTCCCATTGGCGATCTCTTCTGCAAGAG
TCCCGATGTTAGGGGTATATCCTTCACGGGCTCCACTGAGGTGGGCAAAC
TGCTGTTCCGGAACTCTGCTGATGGCATCAAAAGGATTTGTCTCGAGCTC
GGCGGGCATGCTCCGTTCATTGTCTTCGATTCGGCGGACATTGAAAAAGC
AG
BS07675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4685-PA | 1530 | CG4685-RA | 1..886 | 17..902 | 4380 | 99.7 | Plus |
| CG4685-PB | 1530 | CG4685-RB | 1..886 | 17..902 | 4380 | 99.7 | Plus |
| CG4685-PC | 1530 | CG4685-RC | 1..886 | 17..902 | 4380 | 99.7 | Plus |
| CG4685-PD | 1530 | CG4685-RD | 1..886 | 17..902 | 4380 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 191..1076 | 17..902 | 4400 | 99.8 | Plus |
| Ssadh-RD | 1865 | CG4685-RD | 209..1094 | 17..902 | 4400 | 99.8 | Plus |
| Ssadh-RC | 1858 | CG4685-RC | 202..1087 | 17..902 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25625576..25626169 | 902..309 | 2940 | 99.7 | Minus |
| 3R | 32079331 | 3R | 25626344..25626637 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:18:33 has no hits.
BS07675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:10 Download gff for
BS07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PD | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:12:49 Download gff for
BS07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PD | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:58 Download gff for
BS07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 200..1087 | 14..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:50 Download gff for
BS07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 200..1087 | 14..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:50 Download gff for
BS07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25626344..25626639 | 14..310 | 99 | | Minus |
| 3R | 25625576..25626167 | 311..902 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:58 Download gff for
BS07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21451298..21451889 | 311..902 | 99 | <- | Minus |
| arm_3R | 21452066..21452361 | 14..310 | 99 | | Minus |
BS07675.complete Sequence
1562 bp assembled on 2007-10-17
GenBank Submission: FJ635948
> BS07675.complete
GAAGTTATCAGTCGACATGTGGCGACAGCTCAGCGGAGTCGCACGAACAG
GAAGCAGCCTAAGCCTCTGCAGAATGCGAGGATTCTCGGCACTGGTGCAG
GATAAGGCCCTGGTGGATGGCGCCTGGGTGGATTCCAGCAATGCAAAGGC
GACCTTCGAGGTGCGGAATCCTGCCAATGGTGCTGTCATCGGCAAAGTGC
CCAACATGACGGTGGCGGATGCCCAGAAGGCCATAGACGCCGCTAAGCAG
GCGTACGAGTCCAAGGAGTGGCGATCCCTGACCGCCAAGGATCGGTCCAA
CCTGCTCAAGAAGTGGCACAAACTGATCGAGCAGCACTCGCAGGAGATAG
CCGAGATAATGACGGCCGAGTCGGGCAAGCCGATCAACGAGTCGAAGGGG
GAGGTGGCCTACGGAAACGCCTTCGTCGAGTGGTTTGCAGAGGAGGCCCG
TCGCATCTACGGCGAAATTGTGCCCAGTGCATCGCCCAATCGCGAAATCA
TAGTAATGAAGCAGCCCATTGGGGTGGCGGCGCTGATTACGCCCTGGAAC
TTCCCGATGGCTATGATTACGAGGAAAGCAGGAGCCGCCCTGGCCGCAGG
ATGTACGGTCGTGGTGAAACCTTCAGAAGACACTCCTCTTACTGCCCTGG
CTGTGGCCAAATTGGCAGTGGACGCTGGCATTCCAAAGGGTGTGATAAAT
GTGGTCACCACAAACAAAGCGGCTCCCATTGGCGATCTCTTCTGCAAGAG
TCCCGATGTTAGGGGTATATCCTTCACGGGCTCCACTGAGGTGGGCAAAC
TGCTGTTCCGGAACTCTGCTGATGGCATCAAAAGGATTTGTCTCGAGCTC
GGCGGCAATGCTCCGTTCATTGTCTTCGATTCGGCGGACATTGAAAAAGC
AGTGGATGGCGCCATGGCCTCGAAGTTTAGGAATTGCGGACAGACCTGCG
TCTCCGCCAATAGATTCTTTGTCCAGGACAGCGTCTACGATAAGTTTGTT
GGGCAGCTGAAAAAACGCGTGGAAGCTTTGAAGATCGGAGATGGTCAGGG
TTGCGATGTGCAAATCGGACCACTGATCAACGAGATGCAGTTCAACAAAG
TCAGTGGCTTTGTGGAGGACGCCAGGTCGAAGAAGGCGAACATTATTCTG
GGCGGACAGCCGTTGCCCGACAAGGGATCCCTTTTCTACGCACCCACAAT
TGTCACAGATGTGCCACCCTCGGCGCAACTCTACTCGGAGGAGGTCTTTG
GTCCAGTGGTCTCCATCATACGGTTCCGAGACGAAGAAGAAGCGGTAAAG
AAGGCAAACGACACCAGGAGAGGCCTGGCCGGTTACTTCTACAGCGAGAA
TCTGCAGCAGGTGTTCCGGGTGGCCAAGCGACTGGAGGTTGGCATGGTCG
GCGTCAACGAAGGCATCATCTCCGCAGCAGAGGCTCCGTTTGGTGGCGTC
AAGGAGTCCGGTGTCGGACGGGAGGGTTCCAAACACGGTATCGACGACTA
TGTGGACATCAAGTACATTTGCATGGGCAACCTCAAGTACGACTGAAAGC
TTTCTAGACCAT
BS07675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1530 | CG4685-PE | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| Ssadh-RD | 1530 | CG4685-PD | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| Ssadh-RC | 1530 | CG4685-PC | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 191..1721 | 17..1547 | 7655 | 100 | Plus |
| Ssadh-RD | 1865 | CG4685-RD | 209..1739 | 17..1547 | 7655 | 100 | Plus |
| Ssadh-RC | 1858 | CG4685-RC | 202..1732 | 17..1547 | 7655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25624931..25626169 | 1547..309 | 6195 | 100 | Minus |
| 3R | 32079331 | 3R | 25626344..25626637 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:29:56 has no hits.
BS07675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:02 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 1..1530 | 17..1546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:32 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 174..1702 | 17..1545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:03 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 202..1730 | 17..1545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:03 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 172..1704 | 14..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:19 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 202..1730 | 17..1545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:19 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25624933..25626167 | 311..1545 | 100 | <- | Minus |
| 3R | 25626344..25626637 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:03 Download gff for
BS07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21450655..21451889 | 311..1545 | 100 | <- | Minus |
| arm_3R | 21452066..21452359 | 17..310 | 100 | | Minus |
BS07675.pep Sequence
Translation from 16 to 1545
> BS07675.pep
MWRQLSGVARTGSSLSLCRMRGFSALVQDKALVDGAWVDSSNAKATFEVR
NPANGAVIGKVPNMTVADAQKAIDAAKQAYESKEWRSLTAKDRSNLLKKW
HKLIEQHSQEIAEIMTAESGKPINESKGEVAYGNAFVEWFAEEARRIYGE
IVPSASPNREIIVMKQPIGVAALITPWNFPMAMITRKAGAALAAGCTVVV
KPSEDTPLTALAVAKLAVDAGIPKGVINVVTTNKAAPIGDLFCKSPDVRG
ISFTGSTEVGKLLFRNSADGIKRICLELGGNAPFIVFDSADIEKAVDGAM
ASKFRNCGQTCVSANRFFVQDSVYDKFVGQLKKRVEALKIGDGQGCDVQI
GPLINEMQFNKVSGFVEDARSKKANIILGGQPLPDKGSLFYAPTIVTDVP
PSAQLYSEEVFGPVVSIIRFRDEEEAVKKANDTRRGLAGYFYSENLQQVF
RVAKRLEVGMVGVNEGIISAAEAPFGGVKESGVGREGSKHGIDDYVDIKY
ICMGNLKYD*
BS07675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-PE | 509 | CG4685-PE | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PD | 509 | CG4685-PD | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PC | 509 | CG4685-PC | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PB | 509 | CG4685-PB | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PA | 509 | CG4685-PA | 1..509 | 1..509 | 2604 | 100 | Plus |
