Clone Sequence Records
BS07679.3prime Sequence
925 bp (859 high quality bases) assembled on 2006-01-06
> BS07679.3prime
ATGGTCTAGAAAGCTTTTAGCCGGACTTTCCGTTCAGCATTCCGGACAGC
TCCTGGGTGCCACCCTCCTCGGCGGTTTCTTGCGGCGCCGGCTTCTTGCC
GAAGTTCTCCCCATCCTCGATGGTCTCCGGCATGGGTTTGTTAAGGGTCT
CCGGCAAGAGCAGGGACAGCAGGCCAGCGGTGAGAGACAGTGCTCCGCAG
ATGATCAGCGGCAGCGGTCGCCAGATCTCGCCCAGCAGTTTTAGGTAGGG
TGCCAGAATGCCACCCACGCGAGCCACCATGGAGGAGGCTCCCAGACCCA
CATTCCGCACCACAGTCGGGAACTGTTCCGCTGAGAATATGTAGATGGTT
CCATACGACGAGGTAATAGCCAGCTTTCCTATCATGGCGCAGGCAACGAT
CAGCCAATTCATGTCGCTCGGCACGAAGATGGTGGCCAGCAGACTAATTC
CGGCCACCATCATGGTACCGCACAGGATGGAGCGACGACCCCAACGGTTC
AAAGTGAAGAGGAGCAGCGTATAGCCGGGAATTTCCACGGCACCAGAGAT
CATAAAGTTAACCAATTGGTTTCCACCCAGATTGTTGGTGTTCCACGACA
GGCCGTAGTAAACGCCACTGTTCACAAACCAATCGAAGAAGATGAGCAGG
GTTTTCCGTCGAAGATTCGGATAGCGCAGGAGATCGAACACAGTGGCCGC
TGGTTGGGAGGCGGCCATCTCGTCCTGCTTCTTCTTTTCGGCCACCTCGT
CCACCAGCTGCTCGTAGATTTCATTGGGCACCTCCACCTTGTTCTCCTTG
GCCGCCTTCTCGATGATCACAAAGGCCTCATCCTTGCGACCCTTCATCAA
GAGCCAACGGGCAGACTCCGGAATGATCCAGTAGTAGCAAAGGAGGAGCA
GTCCCGGCAAGGTTATAGCAATCTG
BS07679.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6331-PA | 1647 | Orct-RA | 739..1647 | 925..17 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 2154 | CG6331-RB | 1045..1953 | 925..17 | 4530 | 99.9 | Minus |
Orct-RA | 2533 | CG6331-RA | 1424..2332 | 925..17 | 4530 | 99.9 | Minus |
Orct2-RB | 2700 | CG13610-RB | 1379..1991 | 704..92 | 620 | 74.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24277683..24278591 | 925..17 | 4530 | 99.9 | Minus |
3R | 32079331 | 3R | 24274407..24275019 | 704..92 | 560 | 72.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:48:56 has no hits.
BS07679.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:18 Download gff for
BS07679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-PA | 739..1647 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:00 Download gff for
BS07679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6331-PA | 739..1647 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:34 Download gff for
BS07679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 1424..2332 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:30 Download gff for
BS07679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 1424..2332 | 17..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:30 Download gff for
BS07679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24277683..24278591 | 17..925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:34 Download gff for
BS07679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20103405..20104313 | 17..925 | 99 | | Minus |
BS07679.5prime Sequence
884 bp (834 high quality bases) assembled on 2006-01-06
> BS07679.5prime
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAGGCGGCCAAGG
BS07679.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6331-PA | 1647 | Orct-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
CG13610-PA | 1704 | Orct2-RA | 188..368 | 204..384 | 880 | 99.4 | Plus |
CG13610-PA | 1704 | Orct2-RA | 94..155 | 110..171 | 210 | 93.5 | Plus |
CG13610-PA | 1704 | Orct2-RA | 669..747 | 685..763 | 170 | 88.6 | Plus |
CG13610-PA | 1704 | Orct2-RA | 394..435 | 410..451 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 2154 | CG6331-RB | 307..1174 | 17..884 | 4340 | 100 | Plus |
Orct-RA | 2533 | CG6331-RA | 686..1553 | 17..884 | 4340 | 100 | Plus |
Orct2-RB | 2700 | CG13610-RB | 401..1264 | 16..879 | 1740 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24276945..24277812 | 17..884 | 4340 | 100 | Plus |
3R | 32079331 | 3R | 24273429..24274292 | 16..879 | 1740 | 80.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:58:57 has no hits.
BS07679.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:19 Download gff for
BS07679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:01 Download gff for
BS07679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6331-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:41 Download gff for
BS07679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..1553 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:50 Download gff for
BS07679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..1553 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:50 Download gff for
BS07679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24276940..24277812 | 9..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:41 Download gff for
BS07679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20102662..20103534 | 9..884 | 99 | | Plus |
BS07679.complete Sequence
1679 bp (1679 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635949
> BS07679.complete
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAGGCGGCCAAGGAGAACAAGGTGGAGGT
GCCCAATGAAATCTACGAGCAGCTGGTGGACGAGGTGGCCGAAAAGAAGA
AGCAGGACGAGATGGCCGCCTCCCAACCAGCGGCCACTGTGTTCGATCTC
CTGCGCTATCCGAATCTTCGACGGAAAACCCTGCTCATCTTCTTCGATTG
GTTTGTGAACAGTGGCGTTTACTACGGCCTGTCGTGGAACACCAACAATC
TGGGTGGAAACCAATTGGTTAACTTTATGATCTCTGGTGCCGTGGAAATT
CCCGGCTATACGCTGCTCCTCTTCACTTTGAACCGTTGGGGTCGTCGCTC
CATCCTGTGCGGTACCATGATGGTGGCCGGAATTAGTCTGCTGGCCACCA
TCTTCGTGCCGAGCGACATGAATTGGCTGATCGTTGCCTGCGCCATGATA
GGAAAGCTGGCTATTACCTCGTCGTATGGAACCATCTACATATTCTCAGC
GGAACAGTTCCCGACTGTGGTGCGGAATGTGGGTCTGGGAGCCTCCTCCA
TGGTGGCTCGCGTGGGTGGCATTCTGGCACCCTACCTAAAACTGCTGGGC
GAGATCTGGCGACCGCTGCCGCTGATCATCTGCGGAGCACTGTCTCTCAC
CGCTGGCCTGCTGTCCCTGCTCTTGCCGGAGACCCTTAACAAACCCATGC
CGGAGACCATCGAGGATGGGGAGAACTTCGGCAAGAAGCCGGCGCCGCAA
GAAACCGCCGAGGAGGGTGGCACCCAGGAGCTGTCCGGAATGCTGAACGG
AAAGTCCGGCTAAAAGCTTTCTAGACCAT
BS07679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 1647 | CG6331-PB | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Orct-RA | 1647 | CG6331-PA | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Orct2-RB | 1704 | CG13610-PB | 1..863 | 17..879 | 1735 | 80.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 2154 | CG6331-RB | 307..1953 | 17..1663 | 8235 | 100 | Plus |
Orct-RA | 2533 | CG6331-RA | 686..2332 | 17..1663 | 8235 | 100 | Plus |
Orct2-RB | 2700 | CG13610-RB | 401..1264 | 16..879 | 1740 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24276945..24278591 | 17..1663 | 8235 | 100 | Plus |
3R | 32079331 | 3R | 24273429..24274292 | 16..879 | 1740 | 80.1 | Plus |
3R | 32079331 | 3R | 24274407..24275019 | 976..1588 | 560 | 72.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:40:57 has no hits.
BS07679.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:40 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 1..1647 | 17..1663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:32 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..2332 | 9..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:23 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 686..2330 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:40 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..2332 | 9..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:44 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 686..2330 | 17..1661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:44 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24276945..24278589 | 17..1661 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:23 Download gff for
BS07679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20102667..20104311 | 17..1661 | 100 | | Plus |
BS07679.pep Sequence
Translation from 16 to 1662
> BS07679.pep
MGYDDVITHLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCA
LPYENGSIYELSPHLWNLSYPENERCSYYDVDYTEEYLNGSIPRSSNETK
TCSSYVYDRSKYLNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQ
MSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFL
VAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAI
TLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIY
EQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSG
VYYGLSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGT
MMVAGISLLATIFVPSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPT
VVRNVGLGASSMVARVGGILAPYLKLLGEIWRPLPLIICGALSLTAGLLS
LLLPETLNKPMPETIEDGENFGKKPAPQETAEEGGTQELSGMLNGKSG*
BS07679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-PB | 548 | CG6331-PB | 1..548 | 1..548 | 2851 | 100 | Plus |
Orct-PA | 548 | CG6331-PA | 1..548 | 1..548 | 2851 | 100 | Plus |
Orct2-PB | 567 | CG13610-PB | 1..543 | 1..539 | 2103 | 72.7 | Plus |
Orct2-PA | 567 | CG13610-PA | 1..543 | 1..539 | 2103 | 72.7 | Plus |
CG6126-PA | 555 | CG6126-PA | 8..520 | 4..523 | 907 | 39 | Plus |