Clone BS07679 Report

Search the DGRC for BS07679

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptOrct-RA
Protein status:BS07679.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07679.3prime Sequence

925 bp (859 high quality bases) assembled on 2006-01-06

> BS07679.3prime
ATGGTCTAGAAAGCTTTTAGCCGGACTTTCCGTTCAGCATTCCGGACAGC
TCCTGGGTGCCACCCTCCTCGGCGGTTTCTTGCGGCGCCGGCTTCTTGCC
GAAGTTCTCCCCATCCTCGATGGTCTCCGGCATGGGTTTGTTAAGGGTCT
CCGGCAAGAGCAGGGACAGCAGGCCAGCGGTGAGAGACAGTGCTCCGCAG
ATGATCAGCGGCAGCGGTCGCCAGATCTCGCCCAGCAGTTTTAGGTAGGG
TGCCAGAATGCCACCCACGCGAGCCACCATGGAGGAGGCTCCCAGACCCA
CATTCCGCACCACAGTCGGGAACTGTTCCGCTGAGAATATGTAGATGGTT
CCATACGACGAGGTAATAGCCAGCTTTCCTATCATGGCGCAGGCAACGAT
CAGCCAATTCATGTCGCTCGGCACGAAGATGGTGGCCAGCAGACTAATTC
CGGCCACCATCATGGTACCGCACAGGATGGAGCGACGACCCCAACGGTTC
AAAGTGAAGAGGAGCAGCGTATAGCCGGGAATTTCCACGGCACCAGAGAT
CATAAAGTTAACCAATTGGTTTCCACCCAGATTGTTGGTGTTCCACGACA
GGCCGTAGTAAACGCCACTGTTCACAAACCAATCGAAGAAGATGAGCAGG
GTTTTCCGTCGAAGATTCGGATAGCGCAGGAGATCGAACACAGTGGCCGC
TGGTTGGGAGGCGGCCATCTCGTCCTGCTTCTTCTTTTCGGCCACCTCGT
CCACCAGCTGCTCGTAGATTTCATTGGGCACCTCCACCTTGTTCTCCTTG
GCCGCCTTCTCGATGATCACAAAGGCCTCATCCTTGCGACCCTTCATCAA
GAGCCAACGGGCAGACTCCGGAATGATCCAGTAGTAGCAAAGGAGGAGCA
GTCCCGGCAAGGTTATAGCAATCTG

BS07679.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6331-PA 1647 Orct-RA 739..1647 925..17 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 2154 CG6331-RB 1045..1953 925..17 4530 99.9 Minus
Orct-RA 2533 CG6331-RA 1424..2332 925..17 4530 99.9 Minus
Orct2-RB 2700 CG13610-RB 1379..1991 704..92 620 74.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24277683..24278591 925..17 4530 99.9 Minus
3R 32079331 3R 24274407..24275019 704..92 560 72.8 Minus
Blast to na_te.dros performed on 2015-02-10 20:48:56 has no hits.

BS07679.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:18 Download gff for BS07679.3prime
Subject Subject Range Query Range Percent Splice Strand
Orct-PA 739..1647 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:00 Download gff for BS07679.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6331-PA 739..1647 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:34 Download gff for BS07679.3prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 1424..2332 17..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:30 Download gff for BS07679.3prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 1424..2332 17..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:30 Download gff for BS07679.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24277683..24278591 17..925 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:34 Download gff for BS07679.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20103405..20104313 17..925 99   Minus

BS07679.5prime Sequence

884 bp (834 high quality bases) assembled on 2006-01-06

> BS07679.5prime
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAGGCGGCCAAGG

BS07679.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6331-PA 1647 Orct-RA 1..868 17..884 4340 100 Plus
CG13610-PA 1704 Orct2-RA 188..368 204..384 880 99.4 Plus
CG13610-PA 1704 Orct2-RA 94..155 110..171 210 93.5 Plus
CG13610-PA 1704 Orct2-RA 669..747 685..763 170 88.6 Plus
CG13610-PA 1704 Orct2-RA 394..435 410..451 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 2154 CG6331-RB 307..1174 17..884 4340 100 Plus
Orct-RA 2533 CG6331-RA 686..1553 17..884 4340 100 Plus
Orct2-RB 2700 CG13610-RB 401..1264 16..879 1740 80.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24276945..24277812 17..884 4340 100 Plus
3R 32079331 3R 24273429..24274292 16..879 1740 80.1 Plus
Blast to na_te.dros performed on 2015-02-10 03:58:57 has no hits.

BS07679.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:19 Download gff for BS07679.5prime
Subject Subject Range Query Range Percent Splice Strand
Orct-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:01 Download gff for BS07679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6331-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:41 Download gff for BS07679.5prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..1553 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:50 Download gff for BS07679.5prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..1553 9..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:50 Download gff for BS07679.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24276940..24277812 9..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:41 Download gff for BS07679.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20102662..20103534 9..884 99   Plus

BS07679.complete Sequence

1679 bp (1679 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635949

> BS07679.complete
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAGGCGGCCAAGGAGAACAAGGTGGAGGT
GCCCAATGAAATCTACGAGCAGCTGGTGGACGAGGTGGCCGAAAAGAAGA
AGCAGGACGAGATGGCCGCCTCCCAACCAGCGGCCACTGTGTTCGATCTC
CTGCGCTATCCGAATCTTCGACGGAAAACCCTGCTCATCTTCTTCGATTG
GTTTGTGAACAGTGGCGTTTACTACGGCCTGTCGTGGAACACCAACAATC
TGGGTGGAAACCAATTGGTTAACTTTATGATCTCTGGTGCCGTGGAAATT
CCCGGCTATACGCTGCTCCTCTTCACTTTGAACCGTTGGGGTCGTCGCTC
CATCCTGTGCGGTACCATGATGGTGGCCGGAATTAGTCTGCTGGCCACCA
TCTTCGTGCCGAGCGACATGAATTGGCTGATCGTTGCCTGCGCCATGATA
GGAAAGCTGGCTATTACCTCGTCGTATGGAACCATCTACATATTCTCAGC
GGAACAGTTCCCGACTGTGGTGCGGAATGTGGGTCTGGGAGCCTCCTCCA
TGGTGGCTCGCGTGGGTGGCATTCTGGCACCCTACCTAAAACTGCTGGGC
GAGATCTGGCGACCGCTGCCGCTGATCATCTGCGGAGCACTGTCTCTCAC
CGCTGGCCTGCTGTCCCTGCTCTTGCCGGAGACCCTTAACAAACCCATGC
CGGAGACCATCGAGGATGGGGAGAACTTCGGCAAGAAGCCGGCGCCGCAA
GAAACCGCCGAGGAGGGTGGCACCCAGGAGCTGTCCGGAATGCTGAACGG
AAAGTCCGGCTAAAAGCTTTCTAGACCAT

BS07679.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 1647 CG6331-PB 1..1647 17..1663 8235 100 Plus
Orct-RA 1647 CG6331-PA 1..1647 17..1663 8235 100 Plus
Orct2-RB 1704 CG13610-PB 1..863 17..879 1735 80.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 2154 CG6331-RB 307..1953 17..1663 8235 100 Plus
Orct-RA 2533 CG6331-RA 686..2332 17..1663 8235 100 Plus
Orct2-RB 2700 CG13610-RB 401..1264 16..879 1740 80.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24276945..24278591 17..1663 8235 100 Plus
3R 32079331 3R 24273429..24274292 16..879 1740 80.1 Plus
3R 32079331 3R 24274407..24275019 976..1588 560 72.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:40:57 has no hits.

BS07679.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:40 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 1..1647 17..1663 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:32 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..2332 9..1663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:23 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 686..2330 17..1661 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:40 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..2332 9..1663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:44 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 686..2330 17..1661 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:44 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24276945..24278589 17..1661 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:23 Download gff for BS07679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20102667..20104311 17..1661 100   Plus

BS07679.pep Sequence

Translation from 16 to 1662

> BS07679.pep
MGYDDVITHLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCA
LPYENGSIYELSPHLWNLSYPENERCSYYDVDYTEEYLNGSIPRSSNETK
TCSSYVYDRSKYLNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQ
MSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFL
VAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAI
TLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIY
EQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSG
VYYGLSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGT
MMVAGISLLATIFVPSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPT
VVRNVGLGASSMVARVGGILAPYLKLLGEIWRPLPLIICGALSLTAGLLS
LLLPETLNKPMPETIEDGENFGKKPAPQETAEEGGTQELSGMLNGKSG*

BS07679.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-PB 548 CG6331-PB 1..548 1..548 2851 100 Plus
Orct-PA 548 CG6331-PA 1..548 1..548 2851 100 Plus
Orct2-PB 567 CG13610-PB 1..543 1..539 2103 72.7 Plus
Orct2-PA 567 CG13610-PA 1..543 1..539 2103 72.7 Plus
CG6126-PA 555 CG6126-PA 8..520 4..523 907 39 Plus