Clone BS07681 Report

Search the DGRC for BS07681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG31743-RA
Protein status:BS07681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07681.3prime Sequence

942 bp (840 high quality bases) assembled on 2006-01-06

> BS07681.3prime
ATGGTCTAGAAAGCTTTTAGCCAAACTCAAAGCCGAGTACCTCGTCCAGT
GCGTAGTCAAAGAGTCGAAAGTCATCCTCATATATATCGTACAACTTGCG
TATGGCACCGATGGGCAGGGGATCGAAATAGTTGCGCAGATTGGCTCGAG
TGCTCGACGGTTTGTGGCCAGTGGGGAATGTTAGATTGTCGGCTCCAGCC
AGGTAGAGAGCCAACGCGGAGTCATCCAAGAGAGTGTCGTATTTGCCCAC
TACGTTGTACTTCATTACACAGGGATTGCACAGCTTGGCTATAACCTCCC
AGTGCTCGTTGTAGTCCGACTGATTGGCTCGACTCAGCTCCGGGGTGACC
AGATATTGAATGAACTCCCCAAAGCTGACGTCATCGCCGCGTTCCAACGA
ATTGTTGCTGGCTCCCGGGCGCAGCTCTTTCACGATTTGGCGCCCAACGC
GCGACTGGAAGTAGCGGGCACTGGGGGAATCCCCCTCCAACTTATTTCGA
TAGGCGGAGAGAAGACGCTCGAGCGGATGTCGCACCAGGATAAATCGCGT
ATACTCGTCGCTGAGAACCTGTTGCTGTTCCGCTTCGGATAGATCGTAGA
GCTTAGTGAACATGCCCACGGAGTGGGCCAGGGATCCGGGAATCTGGAGG
GGATCGGTTCCGTTGTGCCACTTATTTGTGAGCATCATTAGCACACGCTT
CCAGTTTGTGCAGGCAACCTTAGGCACATAGCAGTATAACAGCTTGTGCT
CTTTGTCCACGATCATGTGGTCCATCTGCAGCTCGCTGAGATCCTCCAAA
GTTTGTGTGTGGTCGCCGAGCAGCTCGCATTGGCGCTGCATGAACTCCTG
GCGTTGTATATTAATGGTTTGCGTAAGCTCCAAGCTCCGGCGGGTAATTT
TAACGTTATTATTATTGCCATCCTCGAACGGCAGGCCAGTGG

BS07681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31743-PA 990 CG31743-RA 65..990 942..17 4630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG34313-RA 2239 CG34313-RA 1020..1945 942..17 4630 100 Minus
CG31743-RB 1586 CG31743-RB 367..1292 942..17 4630 100 Minus
CG31743-RA 2239 CG31743-RA 1020..1945 942..17 4630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16885262..16885736 720..246 2375 100 Minus
2L 23513712 2L 16885795..16886025 247..17 1155 100 Minus
2L 23513712 2L 16881578..16881803 942..717 1130 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:19:06 has no hits.

BS07681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:22 Download gff for BS07681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31743-PA 65..990 17..942 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:05 Download gff for BS07681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31743-PA 65..990 17..942 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:28:42 Download gff for BS07681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34313-RA 1020..1945 17..942 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:59 Download gff for BS07681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31743-RA 1020..1945 17..942 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:59 Download gff for BS07681.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16881578..16881801 719..942 100 -> Minus
2L 16885264..16885735 247..718 100 -> Minus
2L 16885796..16886027 17..246 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:28:42 Download gff for BS07681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16881578..16881801 719..942 100 -> Minus
arm_2L 16885264..16885735 247..718 100 -> Minus
arm_2L 16885796..16886027 17..246 99 -> Minus

BS07681.5prime Sequence

973 bp (771 high quality bases) assembled on 2006-01-06

> BS07681.5prime
GAAGTTATCAGTCGACATGGATCAACTGGTTTGGCTTTCGTTTTGCATTT
CAATAGGCTTTTCGCTCCTGGGAAATTTCTCCACTGGCCTGCCGTTCGAG
GATGGCAATAATAATAACGTTAAAATTACCCGCCGGAGCTTGGAGCTTAC
GCAAACCATTAATATACAACGCCAGGAGTTCATGCAGCGCCAATGCGAGC
TGCTCGGCGACCACACACAAACTTTGGAGGATCTCAGCGAGCTGCAGATG
GACCACATGATCGTGGACAAAGAGCACAAGCTGTTATACTGCTATGTGCC
TAAGGTTGCCTGCACAAACTGGAAGCGTGTGCTAATGATGCTCACAAATA
AGTGGCACAACGGAACCGATCCCCTCCAGATTCCCGGATCCCTGGCCCAC
TCCGTGGGCATGTTCACTAAGCTCTACGATCTATCCGAAGCGGAACAGCA
ACAGGTTCTCAGCGACGAGTATACGCGATTTATCCTGGTGCGACATCCGC
TCGAGCGTCTTCTCTCCGCCTATCGAAATAAGTTGGAGGGGGATTCCCCC
AGTGCCCGCTACTTCCAGTCGCGCGTTGGGCGCCAAATCGTGAAAGAGCT
GCGCCCGGGAGCCAGCAACAATTCGTTGGAACGCGGCGATGACGTCAGCT
TTGGGGAGTTCATTCAATATCTGGTCACCCCGGAGCTGAGTCGAGCCAAT
CAGTCGGACTACAACGAGCACTGGGAGGTTATAGCCAAGCTGTGCAATCC
CTGTGTAATGAAGTACAACGTAGTGGGCAAATACGACACTCTCTTGGATG
ACTCCGCGTTGGCTCTCTACCTGGCTGGAGCCGACAATCTAACATTCCCC
ACTGGCCACAAACCGTCGAGCACTCGAGCCAATCTGCGCAACTATTTCGA
TCCCCCTGCCATCGGTGCCATACGCAAGTTGTACGATATATATGAGGATG
ACTTTCGACTCTTTGACTAAGCA

BS07681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31743-PA 990 CG31743-RA 1..889 17..905 4445 100 Plus
CG31743-PA 990 CG31743-RA 893..953 909..969 305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34313-RA 2239 CG34313-RA 956..1912 17..973 4725 99.7 Plus
CG31743-RB 1586 CG31743-RB 303..1259 17..973 4725 99.7 Plus
CG31743-RA 2239 CG31743-RA 956..1912 17..973 4725 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16885262..16885736 303..777 2375 100 Plus
2L 23513712 2L 16881514..16881803 17..306 1450 100 Plus
2L 23513712 2L 16885795..16885992 776..973 930 98 Plus
Blast to na_te.dros performed on 2015-02-11 13:12:14 has no hits.

BS07681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:23 Download gff for BS07681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31743-PA 1..956 17..972 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:07 Download gff for BS07681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31743-PA 1..956 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:30:32 Download gff for BS07681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34313-RA 950..1911 11..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:12 Download gff for BS07681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31743-RA 950..1911 11..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:12 Download gff for BS07681.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16881508..16881801 11..304 98 -> Plus
2L 16885264..16885735 305..776 100 -> Plus
2L 16885796..16885991 777..972 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:30:32 Download gff for BS07681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16881508..16881801 11..304 98 -> Plus
arm_2L 16885264..16885735 305..776 100 -> Plus
arm_2L 16885796..16885991 777..972 98   Plus

BS07681.complete Sequence

1022 bp (1022 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635950

> BS07681.complete
GAAGTTATCAGTCGACATGGATCAACTGGTTTGGCTTTCGTTTTGCATTT
CAATAGGCTTTTCGCTCCTGGGAAATTTCTCCACTGGCCTGCCGTTCGAG
GATGGCAATAATAATAACGTTAAAATTACCCGCCGGAGCTTGGAGCTTAC
GCAAACCATTAATATACAACGCCAGGAGTTCATGCAGCGCCAATGCGAGC
TGCTCGGCGACCACACACAAACTTTGGAGGATCTCAGCGAGCTGCAGATG
GACCACATGATCGTGGACAAAGAGCACAAGCTGTTATACTGCTATGTGCC
TAAGGTTGCCTGCACAAACTGGAAGCGTGTGCTAATGATGCTCACAAATA
AGTGGCACAACGGAACCGATCCCCTCCAGATTCCCGGATCCCTGGCCCAC
TCCGTGGGCATGTTCACTAAGCTCTACGATCTATCCGAAGCGGAACAGCA
ACAGGTTCTCAGCGACGAGTATACGCGATTTATCCTGGTGCGACATCCGC
TCGAGCGTCTTCTCTCCGCCTATCGAAATAAGTTGGAGGGGGATTCCCCC
AGTGCCCGCTACTTCCAGTCGCGCGTTGGGCGCCAAATCGTGAAAGAGCT
GCGCCCGGGAGCCAGCAACAATTCGTTGGAACGCGGCGATGACGTCAGCT
TTGGGGAGTTCATTCAATATCTGGTCACCCCGGAGCTGAGTCGAGCCAAT
CAGTCGGACTACAACGAGCACTGGGAGGTTATAGCCAAGCTGTGCAATCC
CTGTGTAATGAAGTACAACGTAGTGGGCAAATACGACACTCTCTTGGATG
ACTCCGCGTTGGCTCTCTACCTGGCTGGAGCCGACAATCTAACATTCCCC
ACTGGCCACAAACCGTCGAGCACTCGAGCCAATCTGCGCAACTATTTCGA
TCCCCTGCCCATCGGTGCCATACGCAAGTTGTACGATATATATGAGGATG
ACTTTCGACTCTTTGACTACGCACTGGACGAGGTACTCGGCTTTGAGTTT
GGCTAAAAGCTTTCTAGACCAT

BS07681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31743-RB 990 CG31743-PB 1..990 17..1006 4950 100 Plus
CG31743-RA 990 CG31743-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG34313-RA 2239 CG34313-RA 956..1945 17..1006 4950 100 Plus
CG31743-RB 1586 CG31743-RB 303..1292 17..1006 4950 100 Plus
CG31743-RA 2239 CG31743-RA 956..1945 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16885262..16885736 303..777 2375 100 Plus
2L 23513712 2L 16881514..16881803 17..306 1450 100 Plus
2L 23513712 2L 16885795..16886025 776..1006 1155 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:07:53 has no hits.

BS07681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:42 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
CG31743-RA 1..990 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:35 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
CG34313-RA 950..1945 11..1006 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:47 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
CG34313-RA 956..1943 17..1004 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:42 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
CG34313-RA 950..1945 11..1006 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:08 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
CG31743-RA 956..1943 17..1004 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:08 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16881514..16881801 17..304 100 -> Plus
2L 16885264..16885735 305..776 100 -> Plus
2L 16885796..16886023 777..1004 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:47 Download gff for BS07681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16881514..16881801 17..304 100 -> Plus
arm_2L 16885264..16885735 305..776 100 -> Plus
arm_2L 16885796..16886023 777..1004 100   Plus

BS07681.pep Sequence

Translation from 16 to 1005

> BS07681.pep
MDQLVWLSFCISIGFSLLGNFSTGLPFEDGNNNNVKITRRSLELTQTINI
QRQEFMQRQCELLGDHTQTLEDLSELQMDHMIVDKEHKLLYCYVPKVACT
NWKRVLMMLTNKWHNGTDPLQIPGSLAHSVGMFTKLYDLSEAEQQQVLSD
EYTRFILVRHPLERLLSAYRNKLEGDSPSARYFQSRVGRQIVKELRPGAS
NNSLERGDDVSFGEFIQYLVTPELSRANQSDYNEHWEVIAKLCNPCVMKY
NVVGKYDTLLDDSALALYLAGADNLTFPTGHKPSSTRANLRNYFDPLPIG
AIRKLYDIYEDDFRLFDYALDEVLGFEFG*

BS07681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31743-PB 329 CG31743-PB 1..329 1..329 1738 100 Plus
CG31743-PA 329 CG31743-PA 1..329 1..329 1738 100 Plus
CG14024-PB 444 CG14024-PB 115..395 43..318 242 25.6 Plus
CG14024-PA 444 CG14024-PA 115..395 43..318 242 25.6 Plus
CG13937-PI 363 CG13937-PI 80..347 51..324 214 26 Plus