Clone Sequence Records
BS07681.3prime Sequence
942 bp (840 high quality bases) assembled on 2006-01-06
> BS07681.3prime
ATGGTCTAGAAAGCTTTTAGCCAAACTCAAAGCCGAGTACCTCGTCCAGT
GCGTAGTCAAAGAGTCGAAAGTCATCCTCATATATATCGTACAACTTGCG
TATGGCACCGATGGGCAGGGGATCGAAATAGTTGCGCAGATTGGCTCGAG
TGCTCGACGGTTTGTGGCCAGTGGGGAATGTTAGATTGTCGGCTCCAGCC
AGGTAGAGAGCCAACGCGGAGTCATCCAAGAGAGTGTCGTATTTGCCCAC
TACGTTGTACTTCATTACACAGGGATTGCACAGCTTGGCTATAACCTCCC
AGTGCTCGTTGTAGTCCGACTGATTGGCTCGACTCAGCTCCGGGGTGACC
AGATATTGAATGAACTCCCCAAAGCTGACGTCATCGCCGCGTTCCAACGA
ATTGTTGCTGGCTCCCGGGCGCAGCTCTTTCACGATTTGGCGCCCAACGC
GCGACTGGAAGTAGCGGGCACTGGGGGAATCCCCCTCCAACTTATTTCGA
TAGGCGGAGAGAAGACGCTCGAGCGGATGTCGCACCAGGATAAATCGCGT
ATACTCGTCGCTGAGAACCTGTTGCTGTTCCGCTTCGGATAGATCGTAGA
GCTTAGTGAACATGCCCACGGAGTGGGCCAGGGATCCGGGAATCTGGAGG
GGATCGGTTCCGTTGTGCCACTTATTTGTGAGCATCATTAGCACACGCTT
CCAGTTTGTGCAGGCAACCTTAGGCACATAGCAGTATAACAGCTTGTGCT
CTTTGTCCACGATCATGTGGTCCATCTGCAGCTCGCTGAGATCCTCCAAA
GTTTGTGTGTGGTCGCCGAGCAGCTCGCATTGGCGCTGCATGAACTCCTG
GCGTTGTATATTAATGGTTTGCGTAAGCTCCAAGCTCCGGCGGGTAATTT
TAACGTTATTATTATTGCCATCCTCGAACGGCAGGCCAGTGG
BS07681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31743-PA | 990 | CG31743-RA | 65..990 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34313-RA | 2239 | CG34313-RA | 1020..1945 | 942..17 | 4630 | 100 | Minus |
CG31743-RB | 1586 | CG31743-RB | 367..1292 | 942..17 | 4630 | 100 | Minus |
CG31743-RA | 2239 | CG31743-RA | 1020..1945 | 942..17 | 4630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16885262..16885736 | 720..246 | 2375 | 100 | Minus |
2L | 23513712 | 2L | 16885795..16886025 | 247..17 | 1155 | 100 | Minus |
2L | 23513712 | 2L | 16881578..16881803 | 942..717 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:19:06 has no hits.
BS07681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:22 Download gff for
BS07681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-PA | 65..990 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:05 Download gff for
BS07681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-PA | 65..990 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:28:42 Download gff for
BS07681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34313-RA | 1020..1945 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:59 Download gff for
BS07681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-RA | 1020..1945 | 17..942 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:59 Download gff for
BS07681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16881578..16881801 | 719..942 | 100 | -> | Minus |
2L | 16885264..16885735 | 247..718 | 100 | -> | Minus |
2L | 16885796..16886027 | 17..246 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:28:42 Download gff for
BS07681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16881578..16881801 | 719..942 | 100 | -> | Minus |
arm_2L | 16885264..16885735 | 247..718 | 100 | -> | Minus |
arm_2L | 16885796..16886027 | 17..246 | 99 | -> | Minus |
BS07681.5prime Sequence
973 bp (771 high quality bases) assembled on 2006-01-06
> BS07681.5prime
GAAGTTATCAGTCGACATGGATCAACTGGTTTGGCTTTCGTTTTGCATTT
CAATAGGCTTTTCGCTCCTGGGAAATTTCTCCACTGGCCTGCCGTTCGAG
GATGGCAATAATAATAACGTTAAAATTACCCGCCGGAGCTTGGAGCTTAC
GCAAACCATTAATATACAACGCCAGGAGTTCATGCAGCGCCAATGCGAGC
TGCTCGGCGACCACACACAAACTTTGGAGGATCTCAGCGAGCTGCAGATG
GACCACATGATCGTGGACAAAGAGCACAAGCTGTTATACTGCTATGTGCC
TAAGGTTGCCTGCACAAACTGGAAGCGTGTGCTAATGATGCTCACAAATA
AGTGGCACAACGGAACCGATCCCCTCCAGATTCCCGGATCCCTGGCCCAC
TCCGTGGGCATGTTCACTAAGCTCTACGATCTATCCGAAGCGGAACAGCA
ACAGGTTCTCAGCGACGAGTATACGCGATTTATCCTGGTGCGACATCCGC
TCGAGCGTCTTCTCTCCGCCTATCGAAATAAGTTGGAGGGGGATTCCCCC
AGTGCCCGCTACTTCCAGTCGCGCGTTGGGCGCCAAATCGTGAAAGAGCT
GCGCCCGGGAGCCAGCAACAATTCGTTGGAACGCGGCGATGACGTCAGCT
TTGGGGAGTTCATTCAATATCTGGTCACCCCGGAGCTGAGTCGAGCCAAT
CAGTCGGACTACAACGAGCACTGGGAGGTTATAGCCAAGCTGTGCAATCC
CTGTGTAATGAAGTACAACGTAGTGGGCAAATACGACACTCTCTTGGATG
ACTCCGCGTTGGCTCTCTACCTGGCTGGAGCCGACAATCTAACATTCCCC
ACTGGCCACAAACCGTCGAGCACTCGAGCCAATCTGCGCAACTATTTCGA
TCCCCCTGCCATCGGTGCCATACGCAAGTTGTACGATATATATGAGGATG
ACTTTCGACTCTTTGACTAAGCA
BS07681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31743-PA | 990 | CG31743-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
CG31743-PA | 990 | CG31743-RA | 893..953 | 909..969 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34313-RA | 2239 | CG34313-RA | 956..1912 | 17..973 | 4725 | 99.7 | Plus |
CG31743-RB | 1586 | CG31743-RB | 303..1259 | 17..973 | 4725 | 99.7 | Plus |
CG31743-RA | 2239 | CG31743-RA | 956..1912 | 17..973 | 4725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16885262..16885736 | 303..777 | 2375 | 100 | Plus |
2L | 23513712 | 2L | 16881514..16881803 | 17..306 | 1450 | 100 | Plus |
2L | 23513712 | 2L | 16885795..16885992 | 776..973 | 930 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:12:14 has no hits.
BS07681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:23 Download gff for
BS07681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-PA | 1..956 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:07 Download gff for
BS07681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-PA | 1..956 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:30:32 Download gff for
BS07681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34313-RA | 950..1911 | 11..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:12 Download gff for
BS07681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-RA | 950..1911 | 11..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:12 Download gff for
BS07681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16881508..16881801 | 11..304 | 98 | -> | Plus |
2L | 16885264..16885735 | 305..776 | 100 | -> | Plus |
2L | 16885796..16885991 | 777..972 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:30:32 Download gff for
BS07681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16881508..16881801 | 11..304 | 98 | -> | Plus |
arm_2L | 16885264..16885735 | 305..776 | 100 | -> | Plus |
arm_2L | 16885796..16885991 | 777..972 | 98 | | Plus |
BS07681.complete Sequence
1022 bp (1022 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635950
> BS07681.complete
GAAGTTATCAGTCGACATGGATCAACTGGTTTGGCTTTCGTTTTGCATTT
CAATAGGCTTTTCGCTCCTGGGAAATTTCTCCACTGGCCTGCCGTTCGAG
GATGGCAATAATAATAACGTTAAAATTACCCGCCGGAGCTTGGAGCTTAC
GCAAACCATTAATATACAACGCCAGGAGTTCATGCAGCGCCAATGCGAGC
TGCTCGGCGACCACACACAAACTTTGGAGGATCTCAGCGAGCTGCAGATG
GACCACATGATCGTGGACAAAGAGCACAAGCTGTTATACTGCTATGTGCC
TAAGGTTGCCTGCACAAACTGGAAGCGTGTGCTAATGATGCTCACAAATA
AGTGGCACAACGGAACCGATCCCCTCCAGATTCCCGGATCCCTGGCCCAC
TCCGTGGGCATGTTCACTAAGCTCTACGATCTATCCGAAGCGGAACAGCA
ACAGGTTCTCAGCGACGAGTATACGCGATTTATCCTGGTGCGACATCCGC
TCGAGCGTCTTCTCTCCGCCTATCGAAATAAGTTGGAGGGGGATTCCCCC
AGTGCCCGCTACTTCCAGTCGCGCGTTGGGCGCCAAATCGTGAAAGAGCT
GCGCCCGGGAGCCAGCAACAATTCGTTGGAACGCGGCGATGACGTCAGCT
TTGGGGAGTTCATTCAATATCTGGTCACCCCGGAGCTGAGTCGAGCCAAT
CAGTCGGACTACAACGAGCACTGGGAGGTTATAGCCAAGCTGTGCAATCC
CTGTGTAATGAAGTACAACGTAGTGGGCAAATACGACACTCTCTTGGATG
ACTCCGCGTTGGCTCTCTACCTGGCTGGAGCCGACAATCTAACATTCCCC
ACTGGCCACAAACCGTCGAGCACTCGAGCCAATCTGCGCAACTATTTCGA
TCCCCTGCCCATCGGTGCCATACGCAAGTTGTACGATATATATGAGGATG
ACTTTCGACTCTTTGACTACGCACTGGACGAGGTACTCGGCTTTGAGTTT
GGCTAAAAGCTTTCTAGACCAT
BS07681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31743-RB | 990 | CG31743-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG31743-RA | 990 | CG31743-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34313-RA | 2239 | CG34313-RA | 956..1945 | 17..1006 | 4950 | 100 | Plus |
CG31743-RB | 1586 | CG31743-RB | 303..1292 | 17..1006 | 4950 | 100 | Plus |
CG31743-RA | 2239 | CG31743-RA | 956..1945 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16885262..16885736 | 303..777 | 2375 | 100 | Plus |
2L | 23513712 | 2L | 16881514..16881803 | 17..306 | 1450 | 100 | Plus |
2L | 23513712 | 2L | 16885795..16886025 | 776..1006 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:07:53 has no hits.
BS07681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:42 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:35 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34313-RA | 950..1945 | 11..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:47 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34313-RA | 956..1943 | 17..1004 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:42 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34313-RA | 950..1945 | 11..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:08 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31743-RA | 956..1943 | 17..1004 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:08 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16881514..16881801 | 17..304 | 100 | -> | Plus |
2L | 16885264..16885735 | 305..776 | 100 | -> | Plus |
2L | 16885796..16886023 | 777..1004 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:47 Download gff for
BS07681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16881514..16881801 | 17..304 | 100 | -> | Plus |
arm_2L | 16885264..16885735 | 305..776 | 100 | -> | Plus |
arm_2L | 16885796..16886023 | 777..1004 | 100 | | Plus |
BS07681.pep Sequence
Translation from 16 to 1005
> BS07681.pep
MDQLVWLSFCISIGFSLLGNFSTGLPFEDGNNNNVKITRRSLELTQTINI
QRQEFMQRQCELLGDHTQTLEDLSELQMDHMIVDKEHKLLYCYVPKVACT
NWKRVLMMLTNKWHNGTDPLQIPGSLAHSVGMFTKLYDLSEAEQQQVLSD
EYTRFILVRHPLERLLSAYRNKLEGDSPSARYFQSRVGRQIVKELRPGAS
NNSLERGDDVSFGEFIQYLVTPELSRANQSDYNEHWEVIAKLCNPCVMKY
NVVGKYDTLLDDSALALYLAGADNLTFPTGHKPSSTRANLRNYFDPLPIG
AIRKLYDIYEDDFRLFDYALDEVLGFEFG*
BS07681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31743-PB | 329 | CG31743-PB | 1..329 | 1..329 | 1738 | 100 | Plus |
CG31743-PA | 329 | CG31743-PA | 1..329 | 1..329 | 1738 | 100 | Plus |
CG14024-PB | 444 | CG14024-PB | 115..395 | 43..318 | 242 | 25.6 | Plus |
CG14024-PA | 444 | CG14024-PA | 115..395 | 43..318 | 242 | 25.6 | Plus |
CG13937-PI | 363 | CG13937-PI | 80..347 | 51..324 | 214 | 26 | Plus |