Clone BS07690 Report

Search the DGRC for BS07690

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG1909-RA
Protein status:BS07690.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07690.3prime Sequence

840 bp (839 high quality bases) assembled on 2006-01-06

> BS07690.3prime
ATGGTCTAGAAAGCTTTCACACAGATGACGTCACATTTTGGCCGCTATCG
ATCGTCAGGCTAGATGCACGCATACTTAGAGATGCCAATGATAAGTTGCT
GTGGTAAATGACTTTGGGAGATAGGAGAGCGCTGTTTTCGGTATCTAGAG
CTGGATTCTTAACGTAGCAAAACGCAGCCGAAGGTAAAAGGATGTCGGAG
TTTATCCCTAGGAGGCCGTCGACCGACAAAGAATTCGTATTGAAGGTGGA
AGCAGCTGTGACGCACCTGTCGGTGCTTTCACTTTCAACCGGAACGCTGC
CGCAGAAATGTGTGCGTGAGCTGATCAGCTTGTTGCAGGCGGGGCATGAT
CGCGGGGCATTTTTCTCCCGCCGTCGCAAGATTTCATAGGCGCATCTTGC
ATGAAGAATGTGTGCACAGGGTAGAGCTTCCAAGTTTTCTGGACGAAGTC
CAAGCAACTCCCCACACGCTCCGCAATTTAAGCCTAACGCAGCATCCGTC
TGATTAGCTAGTCTAAAATGAGTGTTGTATTGATCTTCGTCTCCTAGTGC
CCGGTAGATCAATGCCAGTCGGCAACGAATTTTGCGAACCAGAAACTTGG
CTCCAATTGAGCTGGCAACTTCCAGAAGTCTTGTGTTAAATTCTAGTGGT
CTGCAGTTGCAGATCTTGTTCTGTAGACGGAGTGTTTCCAAGCAACGAGC
TGCTCCATCCATAGCCTCCATTTGGGCCATACGATCCCCTAAGCTTGCCG
ATGTACCCATAGCTTGTTCATATTGCCGGAATGCACGATCCATGTCCATT
TTATTTCGGTATATGTCGCCCATGACGCGAATACTTCTCG

BS07690.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PA 1821 CG1909-RA 998..1821 840..17 4120 100 Minus
CG1909-PB 1821 CG1909-RB 998..1821 840..17 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 2374 CG1909-RB 1153..1979 840..14 4135 100 Minus
CG1909-RA 2401 CG1909-RA 1180..2006 840..14 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 588570..588953 397..14 1920 100 Minus
4 1348131 4 587841..588042 597..396 1010 100 Minus
4 1348131 4 586902..587093 787..596 960 100 Minus
4 1348131 4 585886..585938 840..788 265 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:04:48 has no hits.

BS07690.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:37 Download gff for BS07690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 998..1821 17..840 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:27 Download gff for BS07690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 998..1821 17..840 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:23 Download gff for BS07690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 1180..2006 14..840 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:46 Download gff for BS07690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 1180..2006 14..840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:46 Download gff for BS07690.3prime
Subject Subject Range Query Range Percent Splice Strand
4 585886..585938 788..840 100 -> Minus
4 586902..587093 596..787 100 -> Minus
4 587843..588042 396..595 100 -> Minus
4 588572..588953 14..395 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:23 Download gff for BS07690.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 606512..606564 788..840 100 -> Minus
arm_4 607528..607719 596..787 100 -> Minus
arm_4 608469..608668 396..595 100 -> Minus
arm_4 609198..609579 14..395 100   Minus

BS07690.5prime Sequence

906 bp (809 high quality bases) assembled on 2006-01-06

> BS07690.5prime
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGAATAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCCTGCACTCGGTGACCNTAACTCATGCCACCATAGAGCAGC
TCTATT

BS07690.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PA 1821 CG1909-RA 1..844 17..860 4170 99.7 Plus
CG1909-PB 1821 CG1909-RB 1..844 17..860 4170 99.7 Plus
CG1909-PA 1821 CG1909-RA 849..890 865..906 166 95.2 Plus
CG1909-PB 1821 CG1909-RB 849..890 865..906 166 95.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 2374 CG1909-RB 155..1045 16..906 4354 99.3 Plus
CG1909-RA 2401 CG1909-RA 182..1072 16..906 4354 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 585297..585711 492..906 1959 98.1 Plus
4 1348131 4 584988..585174 306..492 935 100 Plus
4 1348131 4 584761..584931 137..307 855 100 Plus
4 1348131 4 583933..584018 52..137 430 100 Plus
4 1348131 4 583825..583863 16..54 195 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:17:02 has no hits.

BS07690.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:38 Download gff for BS07690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:28 Download gff for BS07690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:42 Download gff for BS07690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 174..1072 9..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:57 Download gff for BS07690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 174..1072 9..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:57 Download gff for BS07690.5prime
Subject Subject Range Query Range Percent Splice Strand
4 583817..583863 9..54 93 -> Plus
4 583936..584018 55..137 100 -> Plus
4 584762..584931 138..307 100 -> Plus
4 584990..585174 308..492 100 -> Plus
4 585298..585711 493..906 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:42 Download gff for BS07690.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 604443..604489 9..54 93 -> Plus
arm_4 604562..604644 55..137 100 -> Plus
arm_4 605388..605557 138..307 100 -> Plus
arm_4 605616..605800 308..492 100 -> Plus
arm_4 605924..606337 493..906 98   Plus

BS07690.complete Sequence

1853 bp assembled on 2008-01-03

GenBank Submission: FJ635951

> BS07690.complete
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGC
TCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATG
CACAAGATTATTGTAAGGAGGCCACGAAGCTTTCCCTTATTTCTGGAGAC
CAGGCGACTTACACGAGAAGTATTCGCGTCATGGGCGACATATACCGAAA
TAAAATGGACATGGATCGTGCATTCCGGCAATATGAACAAGCTATGGGTA
CATCGGCAAGCTTAGGGGATCGTATGGCCCAAATGGAGGCTATGGATGGA
GCAGCTCGTTGCTTGGAAACACTCCGTCTACAGAACAAGATCTGCAACTG
CAGACCACTAGAATTTAACACAAGACTTCTGGAAGTTGCCAGCTCAATTG
GAGCCAAGTTTCTGGTTCGCAAAATTCGTTGCCGACTGGCATTGATCTAC
CGGGCACTAGGAGACGAAGATCAATACAACACTCATTTTAGACTAGCTAA
TCAGACGGATGCTGCGTTAGGCTTAAATTGCGGAGCGTGTGGGGAGTTGC
TTGGACTTCGTCCAGAAAACTTGGAAGCTCTACCCTGTGCACACATTCTT
CATGCAAGATGCGCCTATGAAATCTTGCGACGGCGGGAGAAAAATGCCCC
GCGATCATGCCCCGCCTGCAACAAGCTGATCAGCTCACGCACACATTTCT
GCGGCAGCGTTCCGGTTGAAAGTGAAAGCACCGACAGGTGCGTCACAGCT
GCTTCCACCTTCAATACGAATTCTTTGTCGGTCGACGGCCTCCTAGGGAT
AAACTCCGACATCCTTTTACCTTCGGCTGCGTTTTGCTACGTTAAGAATC
CAGCTCTAGATACCGAAAACAGCGCTCTCCTATCTCCCAAAGTCATTTAC
CACAGCAACTTATCATTGGCATCTCTAAGTATGCGTGCATCTAGCCTGAC
GATCGATAGCGGCCAAAATGTGACGTCATCTGTGTGAAAGCTTTCTAGAC
CAT

BS07690.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 1821 CG1909-PB 1..1821 17..1837 9105 100 Plus
CG1909-RA 1821 CG1909-PA 1..1821 17..1837 9105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 2374 CG1909-RB 155..1979 16..1840 9125 100 Plus
CG1909-RA 2401 CG1909-RA 182..2006 16..1840 9125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 585297..585773 492..968 2385 100 Plus
4 1348131 4 588570..588953 1457..1840 1920 100 Plus
4 1348131 4 587841..588042 1257..1458 1010 100 Plus
4 1348131 4 586902..587093 1067..1258 960 100 Plus
4 1348131 4 584988..585174 306..492 935 100 Plus
4 1348131 4 584761..584931 137..307 855 100 Plus
4 1348131 4 585838..585938 966..1066 505 100 Plus
4 1348131 4 583933..584018 52..137 430 100 Plus
4 1348131 4 583825..583863 16..54 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:01:57 has no hits.

BS07690.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:05 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 1..1821 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:52 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 119..1938 17..1836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:16 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 183..2002 17..1836 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:05 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 110..1942 9..1840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:10 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 183..2002 17..1836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:10 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
4 586902..587093 1067..1258 100 -> Plus
4 587843..588042 1259..1458 100 -> Plus
4 588572..588949 1459..1836 100   Plus
4 583826..583863 17..54 100 -> Plus
4 583936..584018 55..137 100 -> Plus
4 584762..584931 138..307 100 -> Plus
4 584990..585174 308..492 100 -> Plus
4 585298..585772 493..967 100 -> Plus
4 585840..585938 968..1066 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:16 Download gff for BS07690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 605616..605800 308..492 100 -> Plus
arm_4 608469..608668 1259..1458 100 -> Plus
arm_4 604452..604489 17..54 100 -> Plus
arm_4 604562..604644 55..137 100 -> Plus
arm_4 605388..605557 138..307 100 -> Plus
arm_4 605924..606398 493..967 100 -> Plus
arm_4 606466..606564 968..1066 100 -> Plus
arm_4 607528..607719 1067..1258 100 -> Plus
arm_4 609198..609575 1459..1836 100   Plus

BS07690.pep Sequence

Translation from 16 to 1836

> BS07690.pep
MSWESINSKDLLSIPPSQNLSATRLLTSPDGSRYLLENSSDLCHLDESFS
RLAGYGSSPDVGSRSVWASQALLRSGSVISCFLSCQQSLRQYIAKRKIER
GRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREA
IEFSHQQLGISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYN
ECGTKCRSGLVHLTVARVYLEMGGFSRALEGLQGAYKIATAIGDPSLELQ
VYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGDLNSCHHRAALLRMA
VSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD
RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEF
NTRLLEVASSIGAKFLVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAA
LGLNCGACGELLGLRPENLEALPCAHILHARCAYEILRRREKNAPRSCPA
CNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVDGLLGINSDIL
LPSAAFCYVKNPALDTENSALLSPKVIYHSNLSLASLSMRASSLTIDSGQ
NVTSSV*

BS07690.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PB 606 CG1909-PB 1..606 1..606 3113 100 Plus
CG1909-PA 606 CG1909-PA 1..606 1..606 3113 100 Plus
CG43163-PC 2523 CG43163-PC 210..622 101..473 181 21.8 Plus
CG43163-PD 2523 CG43163-PD 210..622 101..473 181 21.8 Plus