Clone Sequence Records
BS07690.3prime Sequence
840 bp (839 high quality bases) assembled on 2006-01-06
> BS07690.3prime
ATGGTCTAGAAAGCTTTCACACAGATGACGTCACATTTTGGCCGCTATCG
ATCGTCAGGCTAGATGCACGCATACTTAGAGATGCCAATGATAAGTTGCT
GTGGTAAATGACTTTGGGAGATAGGAGAGCGCTGTTTTCGGTATCTAGAG
CTGGATTCTTAACGTAGCAAAACGCAGCCGAAGGTAAAAGGATGTCGGAG
TTTATCCCTAGGAGGCCGTCGACCGACAAAGAATTCGTATTGAAGGTGGA
AGCAGCTGTGACGCACCTGTCGGTGCTTTCACTTTCAACCGGAACGCTGC
CGCAGAAATGTGTGCGTGAGCTGATCAGCTTGTTGCAGGCGGGGCATGAT
CGCGGGGCATTTTTCTCCCGCCGTCGCAAGATTTCATAGGCGCATCTTGC
ATGAAGAATGTGTGCACAGGGTAGAGCTTCCAAGTTTTCTGGACGAAGTC
CAAGCAACTCCCCACACGCTCCGCAATTTAAGCCTAACGCAGCATCCGTC
TGATTAGCTAGTCTAAAATGAGTGTTGTATTGATCTTCGTCTCCTAGTGC
CCGGTAGATCAATGCCAGTCGGCAACGAATTTTGCGAACCAGAAACTTGG
CTCCAATTGAGCTGGCAACTTCCAGAAGTCTTGTGTTAAATTCTAGTGGT
CTGCAGTTGCAGATCTTGTTCTGTAGACGGAGTGTTTCCAAGCAACGAGC
TGCTCCATCCATAGCCTCCATTTGGGCCATACGATCCCCTAAGCTTGCCG
ATGTACCCATAGCTTGTTCATATTGCCGGAATGCACGATCCATGTCCATT
TTATTTCGGTATATGTCGCCCATGACGCGAATACTTCTCG
BS07690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-PA | 1821 | CG1909-RA | 998..1821 | 840..17 | 4120 | 100 | Minus |
CG1909-PB | 1821 | CG1909-RB | 998..1821 | 840..17 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 2374 | CG1909-RB | 1153..1979 | 840..14 | 4135 | 100 | Minus |
CG1909-RA | 2401 | CG1909-RA | 1180..2006 | 840..14 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 588570..588953 | 397..14 | 1920 | 100 | Minus |
4 | 1348131 | 4 | 587841..588042 | 597..396 | 1010 | 100 | Minus |
4 | 1348131 | 4 | 586902..587093 | 787..596 | 960 | 100 | Minus |
4 | 1348131 | 4 | 585886..585938 | 840..788 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:04:48 has no hits.
BS07690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:37 Download gff for
BS07690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 998..1821 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:27 Download gff for
BS07690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 998..1821 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:23 Download gff for
BS07690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 1180..2006 | 14..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:46 Download gff for
BS07690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 1180..2006 | 14..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:46 Download gff for
BS07690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 585886..585938 | 788..840 | 100 | -> | Minus |
4 | 586902..587093 | 596..787 | 100 | -> | Minus |
4 | 587843..588042 | 396..595 | 100 | -> | Minus |
4 | 588572..588953 | 14..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:23 Download gff for
BS07690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 606512..606564 | 788..840 | 100 | -> | Minus |
arm_4 | 607528..607719 | 596..787 | 100 | -> | Minus |
arm_4 | 608469..608668 | 396..595 | 100 | -> | Minus |
arm_4 | 609198..609579 | 14..395 | 100 | | Minus |
BS07690.5prime Sequence
906 bp (809 high quality bases) assembled on 2006-01-06
> BS07690.5prime
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGAATAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCCTGCACTCGGTGACCNTAACTCATGCCACCATAGAGCAGC
TCTATT
BS07690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-PA | 1821 | CG1909-RA | 1..844 | 17..860 | 4170 | 99.7 | Plus |
CG1909-PB | 1821 | CG1909-RB | 1..844 | 17..860 | 4170 | 99.7 | Plus |
CG1909-PA | 1821 | CG1909-RA | 849..890 | 865..906 | 166 | 95.2 | Plus |
CG1909-PB | 1821 | CG1909-RB | 849..890 | 865..906 | 166 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 2374 | CG1909-RB | 155..1045 | 16..906 | 4354 | 99.3 | Plus |
CG1909-RA | 2401 | CG1909-RA | 182..1072 | 16..906 | 4354 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 585297..585711 | 492..906 | 1959 | 98.1 | Plus |
4 | 1348131 | 4 | 584988..585174 | 306..492 | 935 | 100 | Plus |
4 | 1348131 | 4 | 584761..584931 | 137..307 | 855 | 100 | Plus |
4 | 1348131 | 4 | 583933..584018 | 52..137 | 430 | 100 | Plus |
4 | 1348131 | 4 | 583825..583863 | 16..54 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:17:02 has no hits.
BS07690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:38 Download gff for
BS07690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:28 Download gff for
BS07690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:42 Download gff for
BS07690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 174..1072 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:57 Download gff for
BS07690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 174..1072 | 9..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:57 Download gff for
BS07690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 583817..583863 | 9..54 | 93 | -> | Plus |
4 | 583936..584018 | 55..137 | 100 | -> | Plus |
4 | 584762..584931 | 138..307 | 100 | -> | Plus |
4 | 584990..585174 | 308..492 | 100 | -> | Plus |
4 | 585298..585711 | 493..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:42 Download gff for
BS07690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 604443..604489 | 9..54 | 93 | -> | Plus |
arm_4 | 604562..604644 | 55..137 | 100 | -> | Plus |
arm_4 | 605388..605557 | 138..307 | 100 | -> | Plus |
arm_4 | 605616..605800 | 308..492 | 100 | -> | Plus |
arm_4 | 605924..606337 | 493..906 | 98 | | Plus |
BS07690.complete Sequence
1853 bp assembled on 2008-01-03
GenBank Submission: FJ635951
> BS07690.complete
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGC
TCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATG
CACAAGATTATTGTAAGGAGGCCACGAAGCTTTCCCTTATTTCTGGAGAC
CAGGCGACTTACACGAGAAGTATTCGCGTCATGGGCGACATATACCGAAA
TAAAATGGACATGGATCGTGCATTCCGGCAATATGAACAAGCTATGGGTA
CATCGGCAAGCTTAGGGGATCGTATGGCCCAAATGGAGGCTATGGATGGA
GCAGCTCGTTGCTTGGAAACACTCCGTCTACAGAACAAGATCTGCAACTG
CAGACCACTAGAATTTAACACAAGACTTCTGGAAGTTGCCAGCTCAATTG
GAGCCAAGTTTCTGGTTCGCAAAATTCGTTGCCGACTGGCATTGATCTAC
CGGGCACTAGGAGACGAAGATCAATACAACACTCATTTTAGACTAGCTAA
TCAGACGGATGCTGCGTTAGGCTTAAATTGCGGAGCGTGTGGGGAGTTGC
TTGGACTTCGTCCAGAAAACTTGGAAGCTCTACCCTGTGCACACATTCTT
CATGCAAGATGCGCCTATGAAATCTTGCGACGGCGGGAGAAAAATGCCCC
GCGATCATGCCCCGCCTGCAACAAGCTGATCAGCTCACGCACACATTTCT
GCGGCAGCGTTCCGGTTGAAAGTGAAAGCACCGACAGGTGCGTCACAGCT
GCTTCCACCTTCAATACGAATTCTTTGTCGGTCGACGGCCTCCTAGGGAT
AAACTCCGACATCCTTTTACCTTCGGCTGCGTTTTGCTACGTTAAGAATC
CAGCTCTAGATACCGAAAACAGCGCTCTCCTATCTCCCAAAGTCATTTAC
CACAGCAACTTATCATTGGCATCTCTAAGTATGCGTGCATCTAGCCTGAC
GATCGATAGCGGCCAAAATGTGACGTCATCTGTGTGAAAGCTTTCTAGAC
CAT
BS07690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 1821 | CG1909-PB | 1..1821 | 17..1837 | 9105 | 100 | Plus |
CG1909-RA | 1821 | CG1909-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 2374 | CG1909-RB | 155..1979 | 16..1840 | 9125 | 100 | Plus |
CG1909-RA | 2401 | CG1909-RA | 182..2006 | 16..1840 | 9125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 585297..585773 | 492..968 | 2385 | 100 | Plus |
4 | 1348131 | 4 | 588570..588953 | 1457..1840 | 1920 | 100 | Plus |
4 | 1348131 | 4 | 587841..588042 | 1257..1458 | 1010 | 100 | Plus |
4 | 1348131 | 4 | 586902..587093 | 1067..1258 | 960 | 100 | Plus |
4 | 1348131 | 4 | 584988..585174 | 306..492 | 935 | 100 | Plus |
4 | 1348131 | 4 | 584761..584931 | 137..307 | 855 | 100 | Plus |
4 | 1348131 | 4 | 585838..585938 | 966..1066 | 505 | 100 | Plus |
4 | 1348131 | 4 | 583933..584018 | 52..137 | 430 | 100 | Plus |
4 | 1348131 | 4 | 583825..583863 | 16..54 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:01:57 has no hits.
BS07690.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:05 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RB | 1..1821 | 17..1837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:52 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RB | 119..1938 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:16 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 183..2002 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:05 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RB | 110..1942 | 9..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:10 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 183..2002 | 17..1836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:10 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 586902..587093 | 1067..1258 | 100 | -> | Plus |
4 | 587843..588042 | 1259..1458 | 100 | -> | Plus |
4 | 588572..588949 | 1459..1836 | 100 | | Plus |
4 | 583826..583863 | 17..54 | 100 | -> | Plus |
4 | 583936..584018 | 55..137 | 100 | -> | Plus |
4 | 584762..584931 | 138..307 | 100 | -> | Plus |
4 | 584990..585174 | 308..492 | 100 | -> | Plus |
4 | 585298..585772 | 493..967 | 100 | -> | Plus |
4 | 585840..585938 | 968..1066 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:16 Download gff for
BS07690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 605616..605800 | 308..492 | 100 | -> | Plus |
arm_4 | 608469..608668 | 1259..1458 | 100 | -> | Plus |
arm_4 | 604452..604489 | 17..54 | 100 | -> | Plus |
arm_4 | 604562..604644 | 55..137 | 100 | -> | Plus |
arm_4 | 605388..605557 | 138..307 | 100 | -> | Plus |
arm_4 | 605924..606398 | 493..967 | 100 | -> | Plus |
arm_4 | 606466..606564 | 968..1066 | 100 | -> | Plus |
arm_4 | 607528..607719 | 1067..1258 | 100 | -> | Plus |
arm_4 | 609198..609575 | 1459..1836 | 100 | | Plus |
BS07690.pep Sequence
Translation from 16 to 1836
> BS07690.pep
MSWESINSKDLLSIPPSQNLSATRLLTSPDGSRYLLENSSDLCHLDESFS
RLAGYGSSPDVGSRSVWASQALLRSGSVISCFLSCQQSLRQYIAKRKIER
GRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREA
IEFSHQQLGISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYN
ECGTKCRSGLVHLTVARVYLEMGGFSRALEGLQGAYKIATAIGDPSLELQ
VYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGDLNSCHHRAALLRMA
VSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD
RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEF
NTRLLEVASSIGAKFLVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAA
LGLNCGACGELLGLRPENLEALPCAHILHARCAYEILRRREKNAPRSCPA
CNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVDGLLGINSDIL
LPSAAFCYVKNPALDTENSALLSPKVIYHSNLSLASLSMRASSLTIDSGQ
NVTSSV*
BS07690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-PB | 606 | CG1909-PB | 1..606 | 1..606 | 3113 | 100 | Plus |
CG1909-PA | 606 | CG1909-PA | 1..606 | 1..606 | 3113 | 100 | Plus |
CG43163-PC | 2523 | CG43163-PC | 210..622 | 101..473 | 181 | 21.8 | Plus |
CG43163-PD | 2523 | CG43163-PD | 210..622 | 101..473 | 181 | 21.8 | Plus |