Clone Sequence Records
BS07693.3prime Sequence
888 bp (857 high quality bases) assembled on 2006-01-06
> BS07693.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGTGCTGATACGGCTGCAGCTTCTGC
CGGCGTTGGTAGCAGTACGTCCAGATCGCGATCACGGCCAGCTGAGTTAG
CAGGAAAATGGTGGCAGCCGTGATAAGACCAATGGCGTTAACGCAGAATC
CGTGACCCTCCTCGTTGGCAGTGAATGTGGTCTCGTTACCGTCGTAAAAG
TCTCCGCTTTCCTGCTTATCTTGCTTGAATCCGAACTTATCCGTAATCTG
AATGGACTGAACCAGCAGCATGTCGCTGGGGGCGGACTTCTTTGAAGTGT
CGATGTCGCGACGTGGTCTCGGATGATCATCTGTGGTGTTGAGCGATCTG
CGTTTCCGGCCATAGGACAACAAGGACCTGAACTCCCCGCTGGTGTCCTC
CTGCTCGCACTGGACGGGCTCGCAGCTGGGCATGCAGGGCGTGACCAAGG
CGCGGAACTGGACCACCTCGCTGGAGGGGAACTTGAAGGCATCGAAATTG
GAGAGCAGCATCTTGCCGGAAACCGATCCCTTGTAAATGGGACCCATTAT
GAAGTGGTCGGTTGGGCAGCCATTCGAATCGATTAAGGTAATTTCCGAGT
TATCCACGCCATCCATGGCAACCAGCTCCCGAATGAAGATCTCGTAGGGG
CTCTGCTCGTCGACGATCTCGAACTTGAGGGCCAGCGGGTCGCCCACCTC
GGCGGAGCGCATCATGTCCGAGCCGTCGCGCGACGTAATCCGCATGATGA
CGTTGGGCGACTCCACAATTACCTCCTCGGACAGGGCCGGCATGATGTCG
CCGCGCACATCCAGATCGACGCCATTGCTCACCGACTTGTTGGTCAGGTC
GTACTGACAGGCCAAGGCCAGCCCAGATCGGAGGATGT
BS07693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7802-PA | 2235 | CG7802-RA | 1382..2235 | 870..17 | 4270 | 100 | Minus |
CG7802-PB | 2235 | CG7802-RB | 1382..2235 | 870..17 | 4270 | 100 | Minus |
CG1499-PA | 2502 | CG1499-RA | 1739..1823 | 516..432 | 150 | 87 | Minus |
CG1499-PB | 2502 | CG1499-RB | 1739..1823 | 516..432 | 150 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neo-RB | 3005 | CG7802-RB | 1563..2435 | 888..17 | 4340 | 99.9 | Minus |
neo-RA | 2977 | CG7802-RA | 1535..2407 | 888..17 | 4340 | 99.9 | Minus |
nyo-RD | 3681 | CG1499-RD | 2038..2387 | 703..357 | 415 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29824142..29824700 | 888..331 | 2745 | 99.8 | Minus |
3R | 32079331 | 3R | 29824769..29824976 | 335..128 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 29825117..29825230 | 130..17 | 570 | 100 | Minus |
3R | 32079331 | 3R | 31561411..31561701 | 703..413 | 390 | 75.6 | Minus |
3R | 32079331 | 3R | 31504753..31505087 | 754..420 | 385 | 74.3 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:41:27 has no hits.
BS07693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:42 Download gff for
BS07693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7802-PB | 1363..2235 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:33 Download gff for
BS07693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7802-PB | 1363..2235 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:37:33 Download gff for
BS07693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neo-RA | 1535..2409 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:40 Download gff for
BS07693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neo-RA | 1535..2409 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:40 Download gff for
BS07693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29824142..29824700 | 331..888 | 99 | -> | Minus |
3R | 29824774..29824974 | 130..330 | 100 | -> | Minus |
3R | 29825118..29825232 | 13..129 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:37:33 Download gff for
BS07693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25649864..25650422 | 331..888 | 99 | -> | Minus |
arm_3R | 25650496..25650696 | 130..330 | 100 | -> | Minus |
arm_3R | 25650840..25650954 | 13..129 | 98 | | Minus |
BS07693.5prime Sequence
882 bp (822 high quality bases) assembled on 2006-01-06
> BS07693.5prime
GAAGTTATCAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCC
TGGCCCTAATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATC
CGAAGACAGGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAA
GGTGATGGCCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCA
AAGAAACCTCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTG
GAGACCCGCAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAG
CTCTCTGGGTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGG
ACTGCAATCCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTC
TCGGCGCCCGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCAC
TGATTGCTTGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACT
ACGAGACCGGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCG
GGTGCCCTGACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAA
ATCATGCCTGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTG
TTCAGAACTACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCG
TCAAGACGCGAGTGCTTTGAACTCTGCCTCGGCGAANACGACTTCACATG
CAGATCTGCCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAAC
TGGATCGCCTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGG
TCGGATTACCTTGAAATCACTGTGTCGATGAA
BS07693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7802-PA | 2235 | CG7802-RA | 1..850 | 17..866 | 4231 | 99.8 | Plus |
CG7802-PB | 2235 | CG7802-RB | 1..850 | 17..866 | 4231 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neo-RB | 3005 | CG7802-RB | 201..1067 | 17..882 | 4299 | 99.8 | Plus |
neo-RA | 2977 | CG7802-RA | 173..1039 | 17..882 | 4299 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29822381..29822754 | 17..390 | 1870 | 100 | Plus |
3R | 32079331 | 3R | 29823039..29823241 | 551..753 | 1004 | 99.5 | Plus |
3R | 32079331 | 3R | 29822819..29822982 | 390..553 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29823373..29823504 | 752..882 | 610 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:01:08 has no hits.
BS07693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:43 Download gff for
BS07693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7802-PB | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:35 Download gff for
BS07693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7802-PB | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:37 Download gff for
BS07693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neo-RA | 173..1039 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:45 Download gff for
BS07693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neo-RA | 173..1039 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:45 Download gff for
BS07693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29822820..29822980 | 391..551 | 100 | -> | Plus |
3R | 29823040..29823241 | 552..753 | 99 | -> | Plus |
3R | 29823375..29823504 | 754..882 | 99 | | Plus |
3R | 29822381..29822754 | 17..390 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:37 Download gff for
BS07693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25649097..25649226 | 754..882 | 99 | | Plus |
arm_3R | 25648542..25648702 | 391..551 | 100 | -> | Plus |
arm_3R | 25648762..25648963 | 552..753 | 99 | -> | Plus |
arm_3R | 25648103..25648476 | 17..390 | 100 | -> | Plus |
BS07693.complete Sequence
2267 bp assembled on 2009-08-24
GenBank Submission: KX803821
> BS07693.complete
GAAGTTATCAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCC
TGGCCCTAATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATC
CGAAGACAGGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAA
GGTGATGGCCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCA
AAGAAACCTCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTG
GAGACCCGCAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAG
CTCTCTGGGTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGG
ACTGCAATCCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTC
TCGGCGCCCGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCAC
TGATTGCTTGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACT
ACGAGACCGGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCG
GGTGCCCTGACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAA
ATCATGCCTGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTG
TTCAGAACTACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCG
TCAAGACGCGAGTGCTTTGAACTCTGCCTCGGCGAAAACGACTTCACATG
CAGATCTGCCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAAC
TGGATCGCCTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGG
TCGGATTACCTTGAAAATCACTGTGTCGATGAACCCAACAAGCTCTGCGA
ATTCAAACGTCTACCTGGTCGCATACTGAAGACGGTGGACTCGGTTTACC
AAGAAGTGAGCAGCATTGACGAGTGCCGGGAACTGTGCCTCAACTCGCCA
TATAGGTGCCATTCGTACGACTACAACGACACGGGTGACATGGTGTGTAG
ATTATCCCATCACAGTCGTGCCACCTTGGCGGATGTGCAGGAACCCTTCC
TGGAGGTGCCCGAGGCGTCGACCTATGAACTGACTTCCTGCTACAATGTG
ACCATCGAGTGCGGCGGCGGGGACATGCTGGCACGCATCCGCACCTCCAA
GCTCTTCAACGGCAAGGTGTACGCCAAGGGATCGCCCAAGTCCTGCTCGG
TGGACGTGAAGAGCGCGCTGGACTTCGAGCTGCGCATGAACTACCACGAT
CTGGAGTGCAATGTGCGCCAGAGCACCGCCGGGCGCTATGTGAACGATAT
AATTATCCAGCACCACGACATGATTGTGACATCCTCCGATCTGGGCTTGG
CCTTGGCCTGTCAGTACGACCTGACCAACAAGTCGGTGAGCAATGGCGTC
GATCTGGATGTGCGCGGCGACATCATGCCGGCCCTGTCCGAGGAGGTAAT
TGTGGAGTCGCCCAACGTCATCATGCGGATTACGTCGCGCGACGGCTCGG
ACATGATGCGCTCCGCCGAGGTGGGCGACCCGCTGGCCCTCAAGTTCGAG
ATCGTCGACGAGCAGAGCCCCTACGAGATCTTCATTCGGGAGCTGGTTGC
CATGGATGGCGTGGATAACTCGGAAATTACCTTAATCGATTCGAATGGCT
GCCCAACCGACCACTTCATAATGGGTCCCATTTACAAGGGATCGGTTTCC
GGCAAGATGCTGCTCTCCAATTTCGATGCCTTCAAGTTCCCCTCCAGCGA
GGTGGTCCAGTTCCGCGCCTTGGTCACGCCCTGCATGCCCAGCTGCGAGC
CCGTCCAGTGCGAGCAGGAGGACACCAGCGGGGAGTTCAGGTCCTTGTTG
TCCTATGGCCGGAAACGCAGATCGCTCAACACCACAGATGATCATCCGAG
ACCACGTCGCGACATCGACACTTCAAAGAAGTCCGCCCCCAGCGACATGC
TGCTGGTTCAGTCCATTCAGATTACGGATAAGTTCGGATTCAAGCAAGAT
AAGCAGGAAAGCGGAGACTTTTACGACGGTAACGAGACCACATTCACTGC
CAACGAGGAGGGTCACGGATTCTGCGTTAACGCCATTGGTCTTATCACGG
CTGCCACCATTTTCCTGCTAACTCAGCTGGCCGTGATCGCGATCTGGACG
TACTGCTACCAACGCCGGCAGAAGCTGCAGCCGTATCAGCACTCCTACTA
AAAGCTTTCTAGACCAT
BS07693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neo-RB | 2235 | CG7802-PB | 1..2235 | 17..2251 | 11175 | 100 | Plus |
neo-RA | 2235 | CG7802-PA | 1..2235 | 17..2251 | 11175 | 100 | Plus |
nyo-RD | 2418 | CG1499-PD | 913..1842 | 926..1855 | 1110 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neo-RB | 3005 | CG7802-RB | 201..2435 | 17..2251 | 11175 | 100 | Plus |
neo-RA | 2977 | CG7802-RA | 173..2407 | 17..2251 | 11175 | 100 | Plus |
nyo-RD | 3681 | CG1499-RD | 1399..2328 | 926..1855 | 1110 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29823767..29824700 | 1004..1937 | 4670 | 100 | Plus |
3R | 32079331 | 3R | 29822381..29822754 | 17..390 | 1870 | 100 | Plus |
3R | 32079331 | 3R | 29823373..29823628 | 752..1007 | 1280 | 100 | Plus |
3R | 32079331 | 3R | 29824769..29824976 | 1933..2140 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 29823039..29823241 | 551..753 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 31560853..31561701 | 1007..1855 | 945 | 74.1 | Plus |
3R | 32079331 | 3R | 29822819..29822982 | 390..553 | 820 | 100 | Plus |
3R | 32079331 | 3R | 31504109..31505087 | 870..1848 | 725 | 71.6 | Plus |
3R | 32079331 | 3R | 29825117..29825230 | 2138..2251 | 570 | 100 | Plus |
3R | 32079331 | 3R | 31560706..31560787 | 926..1007 | 185 | 81.7 | Plus |
Blast to na_te.dros performed 2014-11-28 01:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver2 | 4917 | diver2 DIVER2 4917bp | 1245..1307 | 1207..1145 | 126 | 66.7 | Minus |
BS07693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:36 Download gff for
BS07693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7802-RB | 220..2452 | 17..2249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:19 Download gff for
BS07693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neo-RA | 173..2405 | 17..2249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:06 Download gff for
BS07693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neo-RA | 173..2405 | 17..2249 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:06 Download gff for
BS07693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29822381..29822754 | 17..390 | 100 | -> | Plus |
3R | 29822820..29822980 | 391..551 | 100 | -> | Plus |
3R | 29823040..29823241 | 552..753 | 100 | -> | Plus |
3R | 29823375..29823626 | 754..1005 | 100 | -> | Plus |
3R | 29823769..29824700 | 1006..1937 | 100 | -> | Plus |
3R | 29824774..29824974 | 1938..2138 | 100 | -> | Plus |
3R | 29825118..29825228 | 2139..2249 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:19 Download gff for
BS07693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25648103..25648476 | 17..390 | 100 | -> | Plus |
arm_3R | 25648542..25648702 | 391..551 | 100 | -> | Plus |
arm_3R | 25648762..25648963 | 552..753 | 100 | -> | Plus |
arm_3R | 25649097..25649348 | 754..1005 | 100 | -> | Plus |
arm_3R | 25649491..25650422 | 1006..1937 | 100 | -> | Plus |
arm_3R | 25650496..25650696 | 1938..2138 | 100 | -> | Plus |
arm_3R | 25650840..25650950 | 2139..2249 | 100 | | Plus |
BS07693.pep Sequence
Translation from 16 to 2250
> BS07693.pep
MAKINLLRHLFLALMLYSAATAKEHLRIRRQAAESVTAAAPNASKVMASE
EIKDKTEWPGAKETSTEINRTERPVENVETRNSGFDLPAASDLSSSLGSE
EDSIYYDNAPVDCNPELVGFEIVTGYVFSAPEKLMDSQPGTLMLTDCLDT
CRKNKTCQSVNYETGLCVLFSAHADQLPGALTKSQFPVFTIYAQKSCLAV
KPCSRAWYVDRVQNYKLKTEVKRTVSVASRRECFELCLGENDFTCRSANY
DRTSGACELSELDRLTLAGSQAFQVNDGSDYLENHCVDEPNKLCEFKRLP
GRILKTVDSVYQEVSSIDECRELCLNSPYRCHSYDYNDTGDMVCRLSHHS
RATLADVQEPFLEVPEASTYELTSCYNVTIECGGGDMLARIRTSKLFNGK
VYAKGSPKSCSVDVKSALDFELRMNYHDLECNVRQSTAGRYVNDIIIQHH
DMIVTSSDLGLALACQYDLTNKSVSNGVDLDVRGDIMPALSEEVIVESPN
VIMRITSRDGSDMMRSAEVGDPLALKFEIVDEQSPYEIFIRELVAMDGVD
NSEITLIDSNGCPTDHFIMGPIYKGSVSGKMLLSNFDAFKFPSSEVVQFR
ALVTPCMPSCEPVQCEQEDTSGEFRSLLSYGRKRRSLNTTDDHPRPRRDI
DTSKKSAPSDMLLVQSIQITDKFGFKQDKQESGDFYDGNETTFTANEEGH
GFCVNAIGLITAATIFLLTQLAVIAIWTYCYQRRQKLQPYQHSY*
BS07693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neo-PB | 744 | CG7802-PB | 1..744 | 1..744 | 3893 | 100 | Plus |
neo-PA | 744 | CG7802-PA | 1..744 | 1..744 | 3893 | 100 | Plus |
nyo-PD | 805 | CG1499-PD | 39..749 | 29..742 | 2215 | 59.7 | Plus |
nyo-PC | 805 | CG1499-PC | 39..749 | 29..742 | 2215 | 59.7 | Plus |
mey-PB | 774 | CG12063-PB | 138..769 | 112..733 | 2104 | 61.7 | Plus |