Clone BS07693 Report

Search the DGRC for BS07693

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptneo-RA
Protein status:BS07693.pep: full length peptide match
Sequenced Size:2267

Clone Sequence Records

BS07693.3prime Sequence

888 bp (857 high quality bases) assembled on 2006-01-06

> BS07693.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGTGCTGATACGGCTGCAGCTTCTGC
CGGCGTTGGTAGCAGTACGTCCAGATCGCGATCACGGCCAGCTGAGTTAG
CAGGAAAATGGTGGCAGCCGTGATAAGACCAATGGCGTTAACGCAGAATC
CGTGACCCTCCTCGTTGGCAGTGAATGTGGTCTCGTTACCGTCGTAAAAG
TCTCCGCTTTCCTGCTTATCTTGCTTGAATCCGAACTTATCCGTAATCTG
AATGGACTGAACCAGCAGCATGTCGCTGGGGGCGGACTTCTTTGAAGTGT
CGATGTCGCGACGTGGTCTCGGATGATCATCTGTGGTGTTGAGCGATCTG
CGTTTCCGGCCATAGGACAACAAGGACCTGAACTCCCCGCTGGTGTCCTC
CTGCTCGCACTGGACGGGCTCGCAGCTGGGCATGCAGGGCGTGACCAAGG
CGCGGAACTGGACCACCTCGCTGGAGGGGAACTTGAAGGCATCGAAATTG
GAGAGCAGCATCTTGCCGGAAACCGATCCCTTGTAAATGGGACCCATTAT
GAAGTGGTCGGTTGGGCAGCCATTCGAATCGATTAAGGTAATTTCCGAGT
TATCCACGCCATCCATGGCAACCAGCTCCCGAATGAAGATCTCGTAGGGG
CTCTGCTCGTCGACGATCTCGAACTTGAGGGCCAGCGGGTCGCCCACCTC
GGCGGAGCGCATCATGTCCGAGCCGTCGCGCGACGTAATCCGCATGATGA
CGTTGGGCGACTCCACAATTACCTCCTCGGACAGGGCCGGCATGATGTCG
CCGCGCACATCCAGATCGACGCCATTGCTCACCGACTTGTTGGTCAGGTC
GTACTGACAGGCCAAGGCCAGCCCAGATCGGAGGATGT

BS07693.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7802-PA 2235 CG7802-RA 1382..2235 870..17 4270 100 Minus
CG7802-PB 2235 CG7802-RB 1382..2235 870..17 4270 100 Minus
CG1499-PA 2502 CG1499-RA 1739..1823 516..432 150 87 Minus
CG1499-PB 2502 CG1499-RB 1739..1823 516..432 150 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 3005 CG7802-RB 1563..2435 888..17 4340 99.9 Minus
neo-RA 2977 CG7802-RA 1535..2407 888..17 4340 99.9 Minus
nyo-RD 3681 CG1499-RD 2038..2387 703..357 415 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29824142..29824700 888..331 2745 99.8 Minus
3R 32079331 3R 29824769..29824976 335..128 1040 100 Minus
3R 32079331 3R 29825117..29825230 130..17 570 100 Minus
3R 32079331 3R 31561411..31561701 703..413 390 75.6 Minus
3R 32079331 3R 31504753..31505087 754..420 385 74.3 Minus
Blast to na_te.dros performed on 2015-02-06 11:41:27 has no hits.

BS07693.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:42 Download gff for BS07693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1363..2235 17..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:33 Download gff for BS07693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1363..2235 17..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:37:33 Download gff for BS07693.3prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 1535..2409 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:40 Download gff for BS07693.3prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 1535..2409 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:40 Download gff for BS07693.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29824142..29824700 331..888 99 -> Minus
3R 29824774..29824974 130..330 100 -> Minus
3R 29825118..29825232 13..129 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:37:33 Download gff for BS07693.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25649864..25650422 331..888 99 -> Minus
arm_3R 25650496..25650696 130..330 100 -> Minus
arm_3R 25650840..25650954 13..129 98   Minus

BS07693.5prime Sequence

882 bp (822 high quality bases) assembled on 2006-01-06

> BS07693.5prime
GAAGTTATCAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCC
TGGCCCTAATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATC
CGAAGACAGGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAA
GGTGATGGCCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCA
AAGAAACCTCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTG
GAGACCCGCAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAG
CTCTCTGGGTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGG
ACTGCAATCCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTC
TCGGCGCCCGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCAC
TGATTGCTTGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACT
ACGAGACCGGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCG
GGTGCCCTGACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAA
ATCATGCCTGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTG
TTCAGAACTACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCG
TCAAGACGCGAGTGCTTTGAACTCTGCCTCGGCGAANACGACTTCACATG
CAGATCTGCCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAAC
TGGATCGCCTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGG
TCGGATTACCTTGAAATCACTGTGTCGATGAA

BS07693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7802-PA 2235 CG7802-RA 1..850 17..866 4231 99.8 Plus
CG7802-PB 2235 CG7802-RB 1..850 17..866 4231 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 3005 CG7802-RB 201..1067 17..882 4299 99.8 Plus
neo-RA 2977 CG7802-RA 173..1039 17..882 4299 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29822381..29822754 17..390 1870 100 Plus
3R 32079331 3R 29823039..29823241 551..753 1004 99.5 Plus
3R 32079331 3R 29822819..29822982 390..553 820 100 Plus
3R 32079331 3R 29823373..29823504 752..882 610 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 20:01:08 has no hits.

BS07693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:43 Download gff for BS07693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:35 Download gff for BS07693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:37 Download gff for BS07693.5prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..1039 17..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:45 Download gff for BS07693.5prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..1039 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:45 Download gff for BS07693.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29822820..29822980 391..551 100 -> Plus
3R 29823040..29823241 552..753 99 -> Plus
3R 29823375..29823504 754..882 99   Plus
3R 29822381..29822754 17..390 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:37 Download gff for BS07693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25649097..25649226 754..882 99   Plus
arm_3R 25648542..25648702 391..551 100 -> Plus
arm_3R 25648762..25648963 552..753 99 -> Plus
arm_3R 25648103..25648476 17..390 100 -> Plus

BS07693.complete Sequence

2267 bp assembled on 2009-08-24

GenBank Submission: KX803821

> BS07693.complete
GAAGTTATCAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCC
TGGCCCTAATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATC
CGAAGACAGGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAA
GGTGATGGCCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCA
AAGAAACCTCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTG
GAGACCCGCAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAG
CTCTCTGGGTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGG
ACTGCAATCCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTC
TCGGCGCCCGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCAC
TGATTGCTTGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACT
ACGAGACCGGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCG
GGTGCCCTGACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAA
ATCATGCCTGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTG
TTCAGAACTACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCG
TCAAGACGCGAGTGCTTTGAACTCTGCCTCGGCGAAAACGACTTCACATG
CAGATCTGCCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAAC
TGGATCGCCTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGG
TCGGATTACCTTGAAAATCACTGTGTCGATGAACCCAACAAGCTCTGCGA
ATTCAAACGTCTACCTGGTCGCATACTGAAGACGGTGGACTCGGTTTACC
AAGAAGTGAGCAGCATTGACGAGTGCCGGGAACTGTGCCTCAACTCGCCA
TATAGGTGCCATTCGTACGACTACAACGACACGGGTGACATGGTGTGTAG
ATTATCCCATCACAGTCGTGCCACCTTGGCGGATGTGCAGGAACCCTTCC
TGGAGGTGCCCGAGGCGTCGACCTATGAACTGACTTCCTGCTACAATGTG
ACCATCGAGTGCGGCGGCGGGGACATGCTGGCACGCATCCGCACCTCCAA
GCTCTTCAACGGCAAGGTGTACGCCAAGGGATCGCCCAAGTCCTGCTCGG
TGGACGTGAAGAGCGCGCTGGACTTCGAGCTGCGCATGAACTACCACGAT
CTGGAGTGCAATGTGCGCCAGAGCACCGCCGGGCGCTATGTGAACGATAT
AATTATCCAGCACCACGACATGATTGTGACATCCTCCGATCTGGGCTTGG
CCTTGGCCTGTCAGTACGACCTGACCAACAAGTCGGTGAGCAATGGCGTC
GATCTGGATGTGCGCGGCGACATCATGCCGGCCCTGTCCGAGGAGGTAAT
TGTGGAGTCGCCCAACGTCATCATGCGGATTACGTCGCGCGACGGCTCGG
ACATGATGCGCTCCGCCGAGGTGGGCGACCCGCTGGCCCTCAAGTTCGAG
ATCGTCGACGAGCAGAGCCCCTACGAGATCTTCATTCGGGAGCTGGTTGC
CATGGATGGCGTGGATAACTCGGAAATTACCTTAATCGATTCGAATGGCT
GCCCAACCGACCACTTCATAATGGGTCCCATTTACAAGGGATCGGTTTCC
GGCAAGATGCTGCTCTCCAATTTCGATGCCTTCAAGTTCCCCTCCAGCGA
GGTGGTCCAGTTCCGCGCCTTGGTCACGCCCTGCATGCCCAGCTGCGAGC
CCGTCCAGTGCGAGCAGGAGGACACCAGCGGGGAGTTCAGGTCCTTGTTG
TCCTATGGCCGGAAACGCAGATCGCTCAACACCACAGATGATCATCCGAG
ACCACGTCGCGACATCGACACTTCAAAGAAGTCCGCCCCCAGCGACATGC
TGCTGGTTCAGTCCATTCAGATTACGGATAAGTTCGGATTCAAGCAAGAT
AAGCAGGAAAGCGGAGACTTTTACGACGGTAACGAGACCACATTCACTGC
CAACGAGGAGGGTCACGGATTCTGCGTTAACGCCATTGGTCTTATCACGG
CTGCCACCATTTTCCTGCTAACTCAGCTGGCCGTGATCGCGATCTGGACG
TACTGCTACCAACGCCGGCAGAAGCTGCAGCCGTATCAGCACTCCTACTA
AAAGCTTTCTAGACCAT

BS07693.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 2235 CG7802-PB 1..2235 17..2251 11175 100 Plus
neo-RA 2235 CG7802-PA 1..2235 17..2251 11175 100 Plus
nyo-RD 2418 CG1499-PD 913..1842 926..1855 1110 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 3005 CG7802-RB 201..2435 17..2251 11175 100 Plus
neo-RA 2977 CG7802-RA 173..2407 17..2251 11175 100 Plus
nyo-RD 3681 CG1499-RD 1399..2328 926..1855 1110 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29823767..29824700 1004..1937 4670 100 Plus
3R 32079331 3R 29822381..29822754 17..390 1870 100 Plus
3R 32079331 3R 29823373..29823628 752..1007 1280 100 Plus
3R 32079331 3R 29824769..29824976 1933..2140 1040 100 Plus
3R 32079331 3R 29823039..29823241 551..753 1015 100 Plus
3R 32079331 3R 31560853..31561701 1007..1855 945 74.1 Plus
3R 32079331 3R 29822819..29822982 390..553 820 100 Plus
3R 32079331 3R 31504109..31505087 870..1848 725 71.6 Plus
3R 32079331 3R 29825117..29825230 2138..2251 570 100 Plus
3R 32079331 3R 31560706..31560787 926..1007 185 81.7 Plus
Blast to na_te.dros performed 2014-11-28 01:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 1245..1307 1207..1145 126 66.7 Minus

BS07693.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:36 Download gff for BS07693.complete
Subject Subject Range Query Range Percent Splice Strand
CG7802-RB 220..2452 17..2249 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:19 Download gff for BS07693.complete
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..2405 17..2249 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:06 Download gff for BS07693.complete
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..2405 17..2249 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:06 Download gff for BS07693.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29822381..29822754 17..390 100 -> Plus
3R 29822820..29822980 391..551 100 -> Plus
3R 29823040..29823241 552..753 100 -> Plus
3R 29823375..29823626 754..1005 100 -> Plus
3R 29823769..29824700 1006..1937 100 -> Plus
3R 29824774..29824974 1938..2138 100 -> Plus
3R 29825118..29825228 2139..2249 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:19 Download gff for BS07693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25648103..25648476 17..390 100 -> Plus
arm_3R 25648542..25648702 391..551 100 -> Plus
arm_3R 25648762..25648963 552..753 100 -> Plus
arm_3R 25649097..25649348 754..1005 100 -> Plus
arm_3R 25649491..25650422 1006..1937 100 -> Plus
arm_3R 25650496..25650696 1938..2138 100 -> Plus
arm_3R 25650840..25650950 2139..2249 100   Plus

BS07693.pep Sequence

Translation from 16 to 2250

> BS07693.pep
MAKINLLRHLFLALMLYSAATAKEHLRIRRQAAESVTAAAPNASKVMASE
EIKDKTEWPGAKETSTEINRTERPVENVETRNSGFDLPAASDLSSSLGSE
EDSIYYDNAPVDCNPELVGFEIVTGYVFSAPEKLMDSQPGTLMLTDCLDT
CRKNKTCQSVNYETGLCVLFSAHADQLPGALTKSQFPVFTIYAQKSCLAV
KPCSRAWYVDRVQNYKLKTEVKRTVSVASRRECFELCLGENDFTCRSANY
DRTSGACELSELDRLTLAGSQAFQVNDGSDYLENHCVDEPNKLCEFKRLP
GRILKTVDSVYQEVSSIDECRELCLNSPYRCHSYDYNDTGDMVCRLSHHS
RATLADVQEPFLEVPEASTYELTSCYNVTIECGGGDMLARIRTSKLFNGK
VYAKGSPKSCSVDVKSALDFELRMNYHDLECNVRQSTAGRYVNDIIIQHH
DMIVTSSDLGLALACQYDLTNKSVSNGVDLDVRGDIMPALSEEVIVESPN
VIMRITSRDGSDMMRSAEVGDPLALKFEIVDEQSPYEIFIRELVAMDGVD
NSEITLIDSNGCPTDHFIMGPIYKGSVSGKMLLSNFDAFKFPSSEVVQFR
ALVTPCMPSCEPVQCEQEDTSGEFRSLLSYGRKRRSLNTTDDHPRPRRDI
DTSKKSAPSDMLLVQSIQITDKFGFKQDKQESGDFYDGNETTFTANEEGH
GFCVNAIGLITAATIFLLTQLAVIAIWTYCYQRRQKLQPYQHSY*

BS07693.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
neo-PB 744 CG7802-PB 1..744 1..744 3893 100 Plus
neo-PA 744 CG7802-PA 1..744 1..744 3893 100 Plus
nyo-PD 805 CG1499-PD 39..749 29..742 2215 59.7 Plus
nyo-PC 805 CG1499-PC 39..749 29..742 2215 59.7 Plus
mey-PB 774 CG12063-PB 138..769 112..733 2104 61.7 Plus