Clone BS07694 Report

Search the DGRC for BS07694

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptnAChRalpha2-RA
Protein status:BS07694.pep: full length peptide match
Sequenced Size:1763

Clone Sequence Records

BS07694.3prime Sequence

938 bp (875 high quality bases) assembled on 2006-01-06

> BS07694.3prime
ATGGTCTAGAAAGCTTTTAATTCTTCTTCTCGGTTAGATTGTAGATTTGC
TTGGCAACATCGGATAGCTGAACATCAATGGCCTTGGTATCGTCATATAG
CGACGGAGCCTCGCCTAGGATCACAAATGTGCCCACCAAGGATGCGATCA
TAAAGAGCCAGAGGAATAGGCGATCCATGACCATGGCCACAAAGCCCCAG
TCCTGATCTTCCGCATTGAACTCGTCCTGCCGCTGCATGTGGTGCTGTAT
GAACATGACGTTGTGGATGGCCTTTTCCAGCTCGAAAGGATACTTTTTGC
GTGCGGCCACATCGCTCAAAGAGTCGTCCAATCCGGATAGCACCGATGGC
AGTCCGTTGTAGCCGCTCAGGGTGCTCAGTCCGCCGCCCAAAGCCCCCAC
CAAGCCGCTGAATCTGTTTGTGGCCGTGGTCACGTGCATGCCATTGCACC
CACCAGCACCCACACGACCTTGCATCCGCCGCAGGGAGTCTGGACTGGAG
CCGCCCGAGTTCATTTGCATCTCGTCCATCAGCGCCTGTCCGAACTTGGT
CTTGCTGAACTTGAGGCCGTAGTTGATCTTGTTGGCCGCCAGGTCACGCA
GCAGGTCCTTGGGCACACGCATCAGCAGGAGTTTCGGCAATCTCTTGATG
AAGAAGGACCTAATCCAGGGTCGCATCTTGTGCGTACTCGGCTTCCGGTA
GTGTATGTTTAGTATGATAATCGTGATGACAACACTCAGGCCAACCAGCA
ACATGGTGAACAGTAGATATTTTCCCAGTAGCGGCAATGCCAGTGAAGTC
GATGGTATAATCTCCGATATGAGCAGGAAGAACATGGTTTGCGACAGCAG
GATGCTGATGCACAGAGCAATCTTCTCGCCAGAATCGGCGGGCAGGTAAA
AGACCAGCACCGAAAGATACGAGATGCCCACACATGGA

BS07694.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6844-PA 1731 nAcRalpha-96Ab-RA 810..1731 938..17 4610 100 Minus
CG6844-PB 1731 nAcRalpha-96Ab-RB 810..1731 938..17 4610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 1263..2185 938..16 4615 100 Minus
nAChRalpha2-RA 2387 CG6844-RA 1331..2253 938..16 4615 100 Minus
nAChRalpha1-RC 11027 CG5610-RC 2234..2421 931..744 370 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24488842..24489366 938..414 2625 100 Minus
3R 32079331 3R 24489595..24489801 417..211 1035 100 Minus
3R 32079331 3R 24490817..24491013 212..16 985 100 Minus
3R 32079331 3R 24405017..24405204 744..931 370 79.8 Plus
Blast to na_te.dros performed on 2015-02-08 15:04:33 has no hits.

BS07694.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:45 Download gff for BS07694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PA 811..1731 17..937 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:36 Download gff for BS07694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PB 811..1731 17..937 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:09 Download gff for BS07694.3prime
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 1332..2253 16..937 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:24 Download gff for BS07694.3prime
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 1332..2253 16..937 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:24 Download gff for BS07694.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24488843..24489366 414..937 100 -> Minus
3R 24489599..24489800 212..413 100 -> Minus
3R 24490818..24491013 16..211 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:09 Download gff for BS07694.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20314565..20315088 414..937 100 -> Minus
arm_3R 20315321..20315522 212..413 100 -> Minus
arm_3R 20316540..20316735 16..211 100   Minus

BS07694.5prime Sequence

948 bp (786 high quality bases) assembled on 2006-01-06

> BS07694.5prime
GAAGTTATCAGTCGACATGGCTCCTGGCTGCTGCACCACACGACCCCGCC
CCATCGCCCTGCTCGCTCACATCTGGCGCCACTGCAAGCCACTCTGCCTG
CTCCTGGTGCTCCTGCTCCTCTGCGAAACCGTTCAGGCGAATCCCGATGC
CAAGCGACTCTATGACGATCTGCTAAGCAACTACAATCGCCTCATCCGCC
CTGTGAGCAATAATACGGACACGGTGTTGGTCAAATTGGGCCTACGGCTC
TCCCAACTCATCGATTTGAATCTCAAAGATCAAATTCTAACCACCAACGT
GTGGCTGGAGCACGAATGGCAGGATCATAAATTCAAGTGGGATCCCTCGG
AGTATGGCGGCGTCACAGAGCTTTATGTGCCATCCGAGCACATCTGGCTG
CCCGACATCGTGCTCTACAACAATGCCGATGGCGAGTACGTGGTCACCAC
CATGACGAAGGCCATCCTCCACTATACCGGCAAAGTGGTCTGGACTCCGC
CGGCCATCTTCAAGTCCAGCTGTGAGATTGATGTGCGCTACTTTCCCTTC
GATCAGCAGACCTGCTTCATGAAGTTCGGCTCGTGGACCTACGACGGTGA
TCAGATCGATTTGAAGCACATCAGCCAGAAAAACGACAAGGACAACAAGG
TGGAGATAGGCATCGACCTGCGTGAGTACTATCCCAGTGTGGAGTGGGAC
ATTCTCGGCGTTCCGGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGC
CGAACCGTATCCGGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTC
TCTTCTACACGGTTAACCTGATTATTCCATGTGTGGGCATCTCGTATCTT
TCGGTGCTGGTCTTTTACTGCCCGCCGATTCTGGCGAGAAGATTGCTCTG
TGCATCAGCATCCTGCTGTCGCAAACCATGTTCTTCCTGCTCATATCG

BS07694.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6844-PA 1731 nAcRalpha-96Ab-RA 1..852 17..868 4260 100 Plus
CG6844-PB 1731 nAcRalpha-96Ab-RB 1..852 17..868 4260 100 Plus
CG6844-PA 1731 nAcRalpha-96Ab-RA 853..933 868..948 405 100 Plus
CG6844-PB 1731 nAcRalpha-96Ab-RB 853..933 868..948 405 100 Plus
CG11348-PA 1566 nAcRbeta-64B-RA 471..523 538..590 165 92.4 Plus
CG5610-PA 1704 nAcRalpha-96Aa-RA 70..122 146..198 165 92.4 Plus
CG2302-PA 2352 nAcRalpha-7E-RA 466..507 539..580 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 453..1386 16..948 4645 99.9 Plus
nAChRalpha2-RA 2387 CG6844-RA 521..1454 16..948 4645 99.9 Plus
nAChRalpha1-RC 11027 CG5610-RC 1540..2340 136..938 1045 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24485948..24486200 16..268 1265 100 Plus
3R 32079331 3R 24487423..24487603 424..604 905 100 Plus
3R 32079331 3R 24488780..24488965 764..948 880 99.5 Plus
3R 32079331 3R 24488449..24488611 602..764 815 100 Plus
3R 32079331 3R 24487130..24487285 268..423 780 100 Plus
3R 32079331 3R 24405098..24405378 938..659 440 77.9 Minus
3R 32079331 3R 24407324..24407443 598..479 270 81.7 Minus
X 23542271 X 8307006..8307182 423..247 240 75.7 Minus
3R 32079331 3R 24421743..24421827 220..136 230 84.7 Minus
3L 28110227 3L 4433721..4433795 530..604 225 86.7 Plus
X 23542271 X 8292301..8292416 841..726 190 77.6 Minus
Blast to na_te.dros performed on 2015-02-11 18:10:16 has no hits.

BS07694.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:46 Download gff for BS07694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PA 1..933 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:38 Download gff for BS07694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PB 1..933 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:01 Download gff for BS07694.5prime
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 514..1454 8..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:18 Download gff for BS07694.5prime
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 514..1454 8..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:18 Download gff for BS07694.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24485941..24486200 8..268 98 -> Plus
3R 24487131..24487285 269..423 100 -> Plus
3R 24487423..24487603 424..604 100 -> Plus
3R 24488452..24488611 605..764 100 -> Plus
3R 24488781..24488965 765..948 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:01 Download gff for BS07694.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20311663..20311922 8..268 98 -> Plus
arm_3R 20312853..20313007 269..423 100 -> Plus
arm_3R 20313145..20313325 424..604 100 -> Plus
arm_3R 20314174..20314333 605..764 100 -> Plus
arm_3R 20314503..20314687 765..948 99   Plus

BS07694.complete Sequence

1763 bp assembled on 2008-08-14

GenBank Submission: FJ635952

> BS07694.complete
GAAGTTATCAGTCGACATGGCTCCTGGCTGCTGCACCACACGACCCCGCC
CCATCGCCCTGCTCGCTCACATCTGGCGCCACTGCAAGCCACTCTGCCTG
CTCCTGGTGCTCCTGCTCCTCTGCGAAACCGTTCAGGCGAATCCCGATGC
CAAGCGACTCTATGACGATCTGCTAAGCAACTACAATCGCCTCATCCGCC
CTGTGAGCAATAATACGGACACGGTGTTGGTCAAATTGGGCCTACGGCTC
TCCCAACTCATCGATTTGAATCTCAAAGATCAAATTCTAACCACCAACGT
GTGGCTGGAGCACGAATGGCAGGATCATAAATTCAAGTGGGATCCCTCGG
AGTATGGCGGCGTCACAGAGCTTTATGTGCCATCCGAGCACATCTGGCTG
CCCGACATCGTGCTCTACAACAATGCCGATGGCGAGTACGTGGTCACCAC
CATGACGAAGGCCATCCTCCACTATACCGGCAAAGTGGTCTGGACTCCGC
CGGCCATCTTCAAGTCCAGCTGTGAGATTGATGTGCGCTACTTTCCCTTC
GATCAGCAGACCTGCTTCATGAAGTTCGGCTCGTGGACCTACGACGGTGA
TCAGATCGATTTGAAGCACATCAGCCAGAAAAACGACAAGGACAACAAGG
TGGAGATAGGCATCGACCTGCGTGAGTACTATCCCAGTGTGGAGTGGGAC
ATTCTCGGCGTTCCGGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGC
CGAACCGTATCCGGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTC
TCTTCTACACGGTTAACCTGATTATTCCATGTGTGGGCATCTCGTATCTT
TCGGTGCTGGTCTTTTACCTGCCCGCCGATTCTGGCGAGAAGATTGCTCT
GTGCATCAGCATCCTGCTGTCGCAAACCATGTTCTTCCTGCTCATATCGG
AGATTATACCATCGACTTCACTGGCATTGCCGCTACTGGGAAAATATCTA
CTGTTCACCATGTTGCTGGTTGGCCTGAGTGTTGTCATCACGATTATCAT
ACTAAACATACACTACCGGAAGCCGAGTACGCACAAGATGCGACCCTGGA
TTAGGTCCTTCTTCATCAAGAGATTGCCGAAACTCCTGCTGATGCGTGTG
CCCAAGGACCTGCTGCGTGACCTGGCGGCCAACAAGATCAACTACGGCCT
CAAGTTCAGCAAGACCAAGTTCGGACAGGCGCTGATGGACGAGATGCAAA
TGAACTCGGGCGGCTCCAGTCCAGACTCCCTGCGGCGGATGCAAGGTCGT
GTGGGTGCTGGTGGGTGCAATGGCATGCACGTGACCACGGCCACAAACAG
ATTCAGCGGCTTGGTGGGGGCTTTGGGCGGCGGACTGAGCACCCTGAGCG
GCTACAACGGACTGCCATCGGTGCTATCCGGATTGGACGACTCTTTGAGC
GATGTGGCCGCACGCAAAAAGTATCCTTTCGAGCTGGAAAAGGCCATCCA
CAACGTCATGTTCATACAGCACCACATGCAGCGGCAGGACGAGTTCAATG
CGGAAGATCAGGACTGGGGCTTTGTGGCCATGGTCATGGATCGCCTATTC
CTCTGGCTCTTTATGATCGCATCCTTGGTGGGCACATTTGTGATCCTAGG
CGAGGCTCCGTCGCTATATGACGATACCAAGGCCATTGATGTTCAGCTAT
CCGATGTTGCCAAGCAAATCTACAATCTAACCGAGAAGAAGAATTAAAAG
CTTTCTAGACCAT

BS07694.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 1731 CG6844-PB 1..1731 17..1747 8655 100 Plus
nAChRalpha2-RA 1731 CG6844-PA 1..1731 17..1747 8655 100 Plus
nAChRalpha1-RC 1704 CG5610-PC 60..941 136..1020 1105 75.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 453..2185 16..1748 8665 100 Plus
nAChRalpha2-RA 2387 CG6844-RA 521..2253 16..1748 8665 100 Plus
nAChRalpha1-RC 11027 CG5610-RC 1540..2421 136..1020 1105 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24488780..24489366 764..1350 2935 100 Plus
3R 32079331 3R 24485948..24486200 16..268 1265 100 Plus
3R 32079331 3R 24489595..24489801 1347..1553 1035 100 Plus
3R 32079331 3R 24490817..24491013 1552..1748 985 100 Plus
3R 32079331 3R 24487423..24487603 424..604 905 100 Plus
3R 32079331 3R 24488449..24488611 602..764 815 100 Plus
3R 32079331 3R 24487130..24487285 268..423 780 100 Plus
3R 32079331 3R 24405017..24405378 1020..659 580 77.3 Minus
3R 32079331 3R 24407324..24407443 598..479 270 81.7 Minus
X 23542271 X 8307006..8307182 423..247 240 75.7 Minus
3R 32079331 3R 24421743..24421827 220..136 230 84.7 Minus
3L 28110227 3L 4433721..4433795 530..604 225 86.7 Plus
X 23542271 X 8292301..8292416 841..726 190 77.6 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:50 has no hits.

BS07694.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:35 Download gff for BS07694.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RB 337..2076 8..1748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:42 Download gff for BS07694.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 522..2250 17..1745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:37 Download gff for BS07694.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RB 345..2073 17..1745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:44 Download gff for BS07694.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 522..2250 17..1745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:44 Download gff for BS07694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24489599..24489800 1351..1552 100 -> Plus
3R 24490818..24491010 1553..1745 100   Plus
3R 24487423..24487603 424..604 100 -> Plus
3R 24488452..24488611 605..764 100 -> Plus
3R 24488781..24489366 765..1350 100 -> Plus
3R 24485949..24486200 17..268 100 -> Plus
3R 24487131..24487285 269..423 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:42 Download gff for BS07694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20313145..20313325 424..604 100 -> Plus
arm_3R 20314174..20314333 605..764 100 -> Plus
arm_3R 20316540..20316732 1553..1745 100   Plus
arm_3R 20311671..20311922 17..268 100 -> Plus
arm_3R 20312853..20313007 269..423 100 -> Plus
arm_3R 20315321..20315522 1351..1552 100 -> Plus
arm_3R 20314503..20315088 765..1350 100 -> Plus

BS07694.pep Sequence

Translation from 16 to 1746

> BS07694.pep
MAPGCCTTRPRPIALLAHIWRHCKPLCLLLVLLLLCETVQANPDAKRLYD
DLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTTNVWLEHE
WQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAI
LHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLK
HISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEPYPD
IFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISIL
LSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGLSVVITIIILNIHY
RKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKINYGLKFSKT
KFGQALMDEMQMNSGGSSPDSLRRMQGRVGAGGCNGMHVTTATNRFSGLV
GALGGGLSTLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFI
QHHMQRQDEFNAEDQDWGFVAMVMDRLFLWLFMIASLVGTFVILGEAPSL
YDDTKAIDVQLSDVAKQIYNLTEKKN*

BS07694.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-PB 576 CG6844-PB 1..576 1..576 3042 100 Plus
nAChRalpha2-PA 576 CG6844-PA 1..576 1..576 3042 100 Plus
nAChRalpha1-PC 567 CG5610-PC 21..558 41..571 1578 57.7 Plus
nAChRalpha1-PA 567 CG5610-PA 21..558 41..571 1578 57.7 Plus
nAChRalpha1-PB 597 CG5610-PB 21..558 41..571 1578 57.7 Plus