Clone Sequence Records
BS07695.3prime Sequence
860 bp (787 high quality bases) assembled on 2006-01-06
> BS07695.3prime
ATGGTCTAGAAAGCTTCTATTTTCGGGCAATATCACAGTGCAGAGGCTCG
TCCTCCGGCTGACGGTTGTTGATGGCGTTTCTGGGCGAGATCACAAACGG
CTTTCGCTTCTGGGCATTCCTCTTTCGTCGCTGGGCTCGTTTTCTCCTAC
AGTGTATCACGCAGAAGATGACAATTAAAAGCACAAAACAAACTCCGCCA
AAGCAGCCAGCTCCAAAGAGCCAGAAGCTGCGCGTTTCGGCAAACTGCAG
TGTCGTCTGGCAACTGGCGAATGTTGGCGAATGGATCGTTCGATTGTAGG
GCAGTGGACACTCGCGGATGTCGAGCGCCTCCAAGCAAACTGGCACGAAC
TTCGGACTGGCGCCGAGCATCATAAGATGGTTGGTGACCTGCTGGCAGCC
ACACTGGCTCAACTGCGACTTGGTCAGATCGATGACCTGCAGGTGGCACA
TATTCGCCAGGCTGTCGATCCTGAAGTTCTGCAGCGGATTCATCGAGGCA
TTCAGTTGCCAGAGTTTTGGAAGTATGCCCAGATCGGGTAACTCCTGTAG
CTCGCAACCTGCCACGTTCAGGTACTCCAGTGGAGCACGAATGGGCTTCT
CCAGTGCCTGAAGATTGAGGGATGTTAGCTCATTGCTATCGATGTATAGG
TTTCTCAGTCGCGGCAGCTGGAACAACTCCAGCGGTATCGTTGTCAGTCC
ATTATTCGAAAGATCAATTTCCTGGAGCGAGGTGAGTGGCTCGAAGGTTC
CCACCTCCACCGATAAGATCATGTTATCATAGAGCATCAGAAACTTAATG
TCCGTGTATCGCTGAAACGAGCTAGTTTTCAGCTTCCTGATGCGATTGTG
CGATAGATCC
BS07695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15658-PA | 1032 | CG15658-RA | 189..1032 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1630 | CG15658-RA | 488..1331 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21198226..21198434 | 725..517 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 21198492..21198677 | 516..331 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21198975..21199132 | 174..17 | 790 | 100 | Minus |
2R | 25286936 | 2R | 21198761..21198917 | 331..175 | 785 | 100 | Minus |
2R | 25286936 | 2R | 21198026..21198165 | 860..721 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:57:26 has no hits.
BS07695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:48 Download gff for
BS07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 189..1032 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:39 Download gff for
BS07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 189..1032 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:19:06 Download gff for
BS07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 488..1339 | 6..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:39 Download gff for
BS07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 488..1339 | 6..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:39 Download gff for
BS07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21198026..21198164 | 722..860 | 100 | -> | Minus |
2R | 21198230..21198434 | 517..721 | 100 | -> | Minus |
2R | 21198492..21198677 | 331..516 | 100 | -> | Minus |
2R | 21198762..21198917 | 175..330 | 100 | -> | Minus |
2R | 21198975..21199140 | 6..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:19:06 Download gff for
BS07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17085531..17085669 | 722..860 | 100 | -> | Minus |
arm_2R | 17085735..17085939 | 517..721 | 100 | -> | Minus |
arm_2R | 17085997..17086182 | 331..516 | 100 | -> | Minus |
arm_2R | 17086267..17086422 | 175..330 | 100 | -> | Minus |
arm_2R | 17086480..17086645 | 6..174 | 97 | | Minus |
BS07695.5prime Sequence
923 bp (805 high quality bases) assembled on 2006-01-06
> BS07695.5prime
GAAGTTATCAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCG
TGTGCCTCCAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTG
CGCAAGTGCACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTA
CGACTTGGACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGG
TTCTGGATCTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTT
CAGCGATACACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTT
ATCGGTGGAGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTG
ATCTTTCGAATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTG
CCGCGACTGAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAA
TCTTCAGGCACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACG
TGGCAGGTTGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAA
CTCTGGCAACTGAATGCCTCGATGAATCCGCTGCAGAACTTCAGGATCGA
CAGCCTGGCGAATATGTGCCACCTGCAGGTCATCGATCTGACCAAGTCGC
AGTTGAGCCAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTC
GGCGCCAGTCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCG
CGAGTGTCCACTGCCCTACAATCGAACGATCCATTCGCCAACATTCGCCA
GTTGCCAGACGACACTGCAGTTTGCCGAAACGCGCAGCTTCTGGCTCTTT
GGAGCTGGCTGCTTTGGCGGAGTTTGTTTTGTGCTTTTAATTGTCATCTT
CTGCGTGATACACTGTAGGAGAA
BS07695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15658-PA | 1032 | CG15658-RA | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1630 | CG15658-RA | 299..1206 | 16..923 | 4540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21198226..21198434 | 340..548 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 21197610..21197795 | 16..201 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198492..21198677 | 549..734 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198761..21198917 | 734..890 | 785 | 100 | Plus |
2R | 25286936 | 2R | 21198019..21198165 | 198..344 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:17:14 has no hits.
BS07695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:49 Download gff for
BS07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:41 Download gff for
BS07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:44 Download gff for
BS07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 292..1206 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:27 Download gff for
BS07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 292..1206 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:27 Download gff for
BS07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21197601..21197793 | 5..199 | 97 | -> | Plus |
2R | 21198021..21198164 | 200..343 | 100 | -> | Plus |
2R | 21198230..21198434 | 344..548 | 100 | -> | Plus |
2R | 21198492..21198677 | 549..734 | 100 | -> | Plus |
2R | 21198762..21198917 | 735..890 | 100 | -> | Plus |
2R | 21198975..21199007 | 891..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:44 Download gff for
BS07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17085997..17086182 | 549..734 | 100 | -> | Plus |
arm_2R | 17086267..17086422 | 735..890 | 100 | -> | Plus |
arm_2R | 17086480..17086512 | 891..923 | 100 | | Plus |
arm_2R | 17085735..17085939 | 344..548 | 100 | -> | Plus |
arm_2R | 17085106..17085298 | 5..199 | 97 | -> | Plus |
arm_2R | 17085526..17085669 | 200..343 | 100 | -> | Plus |
BS07695.complete Sequence
1064 bp (1064 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635953
> BS07695.complete
GAAGTTATCAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCG
TGTGCCTCCAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTG
CGCAAGTGCACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTA
CGACTTGGACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGG
TTCTGGATCTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTT
CAGCGATACACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTT
ATCGGTGGAGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTG
ATCTTTCGAATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTG
CCGCGACTGAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAA
TCTTCAGGCACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACG
TGGCAGGTTGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAA
CTCTGGCAACTGAATGCCTCGATGAATCCGCTGCAGAACTTCAGGATCGA
CAGCCTGGCGAATATGTGCCACCTGCAGGTCATCGATCTGACCAAGTCGC
AGTTGAGCCAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTC
GGCGCCAGTCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCG
CGAGTGTCCACTGCCCTACAATCGAACGATCCATTCGCCAACATTCGCCA
GTTGCCAGACGACACTGCAGTTTGCCGAAACGCGCAGCTTCTGGCTCTTT
GGAGCTGGCTGCTTTGGCGGAGTTTGTTTTGTGCTTTTAATTGTCATCTT
CTGCGTGATACACTGTAGGAGAAAACGAGCCCAGCGACGAAAGAGGAATG
CCCAGAAGCGAAAGCCGTTTGTGATCTCGCCCAGAAACGCCATCAACAAC
CGTCAGCCGGAGGACGAGCCTCTGCACTGTGATATTGCCCGAAAATAGAA
GCTTTCTAGACCAT
BS07695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1032 | CG15658-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1630 | CG15658-RA | 299..1331 | 16..1048 | 5165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21198226..21198434 | 340..548 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 21197610..21197795 | 16..201 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198492..21198677 | 549..734 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198975..21199132 | 891..1048 | 790 | 100 | Plus |
2R | 25286936 | 2R | 21198761..21198917 | 734..890 | 785 | 100 | Plus |
2R | 25286936 | 2R | 21198019..21198165 | 198..344 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:41:09 has no hits.
BS07695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:44 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-RA | 1..1032 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:37 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-RA | 290..1337 | 9..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:12 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 300..1324 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:44 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-RA | 290..1337 | 9..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:42 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 300..1324 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:42 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21197611..21197793 | 17..199 | 100 | -> | Plus |
2R | 21198021..21198164 | 200..343 | 100 | -> | Plus |
2R | 21198230..21198434 | 344..548 | 100 | -> | Plus |
2R | 21198492..21198677 | 549..734 | 100 | -> | Plus |
2R | 21198762..21198917 | 735..890 | 100 | -> | Plus |
2R | 21198975..21199125 | 891..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:12 Download gff for
BS07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17085116..17085298 | 17..199 | 100 | -> | Plus |
arm_2R | 17085526..17085669 | 200..343 | 100 | -> | Plus |
arm_2R | 17085735..17085939 | 344..548 | 100 | -> | Plus |
arm_2R | 17085997..17086182 | 549..734 | 100 | -> | Plus |
arm_2R | 17086267..17086422 | 735..890 | 100 | -> | Plus |
arm_2R | 17086480..17086630 | 891..1041 | 100 | | Plus |
BS07695.pep Sequence
Translation from 16 to 1047
> BS07695.pep
MELHWQLLTFIVCLQLLHSAGFIIQSEVRKCTYGHIDKLLRIRCYDLDLK
EVPQNLKSSVEVLDLSHNRIRKLKTSSFQRYTDIKFLMLYDNMILSVEVG
TFEPLTSLQEIDLSNNGLTTIPLELFQLPRLRNLYIDSNELTSLNLQALE
KPIRAPLEYLNVAGCELQELPDLGILPKLWQLNASMNPLQNFRIDSLANM
CHLQVIDLTKSQLSQCGCQQVTNHLMMLGASPKFVPVCLEALDIRECPLP
YNRTIHSPTFASCQTTLQFAETRSFWLFGAGCFGGVCFVLLIVIFCVIHC
RRKRAQRRKRNAQKRKPFVISPRNAINNRQPEDEPLHCDIARK*
BS07695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-PA | 343 | CG15658-PA | 1..343 | 1..343 | 1802 | 100 | Plus |
sli-PB | 1469 | CG43758-PB | 82..238 | 40..203 | 202 | 34.1 | Plus |
sli-PD | 1480 | CG43758-PD | 82..238 | 40..203 | 202 | 34.1 | Plus |
sli-PA | 1480 | CG43758-PA | 82..238 | 40..203 | 202 | 34.1 | Plus |
rk-PA | 1360 | CG8930-PA | 159..345 | 38..223 | 183 | 30.7 | Plus |