Clone BS07696 Report

Search the DGRC for BS07696

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptDAT-RA
Protein status:BS07696.pep: full length peptide match
Sequenced Size:1928

Clone Sequence Records

BS07696.3prime Sequence

869 bp (815 high quality bases) assembled on 2006-01-06

> BS07696.3prime
ATGGTCTAGAAAGCTTTCAGACATCGACGGGTTCCTTGGCGGTCTCCGTG
TCGGTTAATCGCACCACGGTGACCTCGGTGGTGACCCCGTTCAGCACCAT
TGCCATCGATTGCTGATCTCGCCATGGTGTGGTCAAAATTGTGAACCGCT
GACGCAGACTTCCCGGCGTGGAAAGTAGTTTAAATATCGCCACGGCAGGA
ATCATCACAACCGAGGAACCAGCTATGCACCAACCCAGCGCATTGGCCCA
ACTGGGATACACATAGTCCGCATATGTCAGTGGCTCGTAGCCAATCAGCC
CGTAAACCGTGATGAAGAGCAGGAAAATTGGTGCCACAAATCGCCAACAC
ACCTGCCAGTATCTTCCCGGTGGAAAACCAATCATGTCCCGTATATCCTC
GCTAAATCGATTGGTTCCGTAGATCCAGGACACGGCGATTGCCTCAAAGA
ACACGGCCACCAAAATCGAGTAGCCAGCAGCGTAACGATCCAGCAGATGG
AAGAAATAGAAGCCACCCTGAGTGCAACTGGCCAAACCGACCACGAAGTA
CAGGGAAAACAGTCCAGCTACAAACAGCTCTCGGTTTCTTTTGATCTTGG
GAAACTCGTCGCTCAAAGCTGTGATTATAGCCTCTGAACCACCAAACGAA
CTATCCAAGCCCAAAGTTAGCAGCATCATGAAGAATATTAGAGCCCAGAA
AGTGCTGGCCGGCATGGTGGCAATGGCAGCTGGATAGACCACGAAAACCA
GACCAGGTCCTTCGGTGGCAACATCTTCAATTCTTACACCCAGTGTGTGG
GCCATGTAACCCAGCACGGAAGATATCACAAAGCCGGCTATAAAGCTGGT
AGCCGAGTTAATGAAACTG

BS07696.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8380-PA 1896 DAT-RA 1044..1896 869..17 4215 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
DAT-RB 3040 CG8380-RB 1367..2219 869..17 4235 99.8 Minus
DAT-RA 3040 CG8380-RA 1367..2219 869..17 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16559388..16560018 17..647 3155 100 Plus
2R 25286936 2R 16560073..16560295 647..869 1085 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 16:06:32 has no hits.

BS07696.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:50 Download gff for BS07696.3prime
Subject Subject Range Query Range Percent Splice Strand
DAT-PA 1044..1896 17..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:42 Download gff for BS07696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8380-PA 1044..1896 17..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:33 Download gff for BS07696.3prime
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 1367..2222 11..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:10 Download gff for BS07696.3prime
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 1367..2222 11..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:10 Download gff for BS07696.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16559385..16560017 11..646 99 <- Plus
2R 16560073..16560295 647..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:33 Download gff for BS07696.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12446890..12447522 11..646 99 <- Plus
arm_2R 12447578..12447800 647..869 99   Plus

BS07696.5prime Sequence

914 bp (795 high quality bases) assembled on 2006-01-06

> BS07696.5prime
GAAGTTATCAGTCGACATGTCACCAACCGGACATATATCCAAATCAAAGA
CGCCCACGCCACACGATAACGATAACAATAGCATCAGCGACGAGCGCGAA
ACATGGAGCGGCAAAGTGGATTTTTTATTATCGGTTATTGGATTCGCCGT
CGATTTAGCAAACGTCTGGAGATTTCCCTATTTGTGCTACAAAAATGGCG
GTGGCGCTTTTCTTGTGCCCTACGGCATTATGTTGGTGGTCGGTGGCATT
CCTCTGTTCTATATGGAATTGGCCCTGGGTCAGCACAATCGTAAGGGTGC
CATAACCTGCTGGGGTCGCTTGGTGCCCCTCTTCAAAGGAATTGGATATG
CCGTGGTGCTGATAGCCTTCTATGTGGACTTCTATTACAATGTGATTATT
GCCTGGTCGTTGCGTTTCTTTTTTGCATCCTTCACCAACTCGCTGCCTTG
GACGTCGTGTAATAATATTTGGAACACACCAAATTGTAGACCGTTTGAGA
GCCAAAATGCATCTCGTGTTCCGGTTATTGGTAACTATAGTGACTTGTAT
GCCATGGGAAATCAAAGCCTGCTCTACAATGAGACATATATGAATGGTTC
GAGCTTGGATACGTCAGCGGTTGGCCATGTGGAGGGTTTTCAGTCCGCAG
CATCGGAATATTTTAACCGCTACATTTTGGAGCTGAACCGCAGCGAGGGA
ATCCATGACTTGGGCGCCATCAAATGGGACATGGCGCTGTGCCTTCTGAT
TGTCTACTTAATTTGTTACTTCTCCCTGTGGAAGGGTATCAGCACTTCGG
GGCAGGTTGTGTGGTTTACTGCCCTCTTTCCCTATGCAGTGCTACTGATT
CTTCTAATCAGAGGGCTCACACTGCCGGGATCTTTTCTGGGCATTCAGTA
TTATCTTACGCCCA

BS07696.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8380-PA 1896 DAT-RA 1..898 17..914 4440 99.7 Plus
CG1732-PB 1527 CG1732-RB 237..275 160..198 145 94.8 Plus
CG1732-PA 1911 CG1732-RA 237..275 160..198 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
DAT-RB 3040 CG8380-RB 324..1221 17..914 4460 99.8 Plus
DAT-RA 3040 CG8380-RA 324..1221 17..914 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16560504..16560751 914..667 1210 99.2 Minus
2R 25286936 2R 16563770..16563957 204..17 940 100 Minus
2R 25286936 2R 16560809..16560982 666..493 870 100 Minus
2R 25286936 2R 16561043..16561199 493..337 785 100 Minus
2R 25286936 2R 16561261..16561397 339..203 685 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:04:16 has no hits.

BS07696.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:51 Download gff for BS07696.5prime
Subject Subject Range Query Range Percent Splice Strand
DAT-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:43 Download gff for BS07696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8380-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:09 Download gff for BS07696.5prime
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 313..1220 6..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:16 Download gff for BS07696.5prime
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 313..1220 6..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:16 Download gff for BS07696.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16560505..16560751 667..913 99 <- Minus
2R 16560809..16560981 494..666 100 <- Minus
2R 16561043..16561197 339..493 100 <- Minus
2R 16561262..16561396 204..338 100 <- Minus
2R 16563771..16563968 6..203 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:09 Download gff for BS07696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12448767..12448901 204..338 100 <- Minus
arm_2R 12451276..12451473 6..203 98   Minus
arm_2R 12448010..12448256 667..913 99 <- Minus
arm_2R 12448314..12448486 494..666 100 <- Minus
arm_2R 12448548..12448702 339..493 100 <- Minus

BS07696.complete Sequence

1928 bp assembled on 2009-08-24

GenBank Submission: KX800770

> BS07696.complete
GAAGTTATCAGTCGACATGTCACCAACCGGACATATATCCAAATCAAAGA
CGCCCACGCCACACGATAACGATAACAATAGCATCAGCGACGAGCGCGAA
ACATGGAGCGGCAAAGTGGATTTTTTATTATCGGTTATTGGATTCGCCGT
CGATTTAGCAAACGTCTGGAGATTTCCCTATTTGTGCTACAAAAATGGCG
GTGGCGCTTTTCTTGTGCCCTACGGCATTATGTTGGTGGTCGGTGGCATT
CCTCTGTTCTATATGGAATTGGCCCTGGGTCAGCACAATCGTAAGGGTGC
CATAACCTGCTGGGGTCGCTTGGTGCCCCTCTTCAAAGGAATTGGATATG
CCGTGGTGCTGATAGCCTTCTATGTGGACTTCTATTACAATGTGATTATT
GCCTGGTCGTTGCGTTTCTTTTTTGCATCCTTCACCAACTCGCTGCCTTG
GACGTCGTGTAATAATATTTGGAACACACCAAATTGTAGACCGTTTGAGA
GCCAAAATGCATCTCGTGTTCCGGTTATTGGTAACTATAGTGACTTGTAT
GCCATGGGAAATCAAAGCCTGCTCTACAATGAGACATATATGAATGGTTC
GAGCTTGGATACGTCAGCGGTTGGCCATGTGGAGGGTTTTCAGTCCGCAG
CATCGGAATATTTTAACCGCTACATTTTGGAGCTGAACCGCAGCGAGGGA
ATCCATGACTTGGGCGCCATCAAATGGGACATGGCGCTGTGCCTTCTGAT
TGTCTACTTAATTTGTTACTTCTCCCTGTGGAAGGGTATCAGCACTTCGG
GCAAGGTTGTGTGGTTTACTGCCCTCTTTCCCTATGCAGTGCTACTGATT
CTTCTAATCAGAGGGCTCACACTGCCGGGATCTTTTCTGGGCATTCAGTA
TTATCTTACGCCCAACTTTAGTGCCATCTATAAGGCTGAGGTCTGGGTGG
ATGCTGCCACCCAGGTGTTTTTCTCATTGGGTCCAGGATTTGGAGTGCTG
CTGGCCTATGCATCCTATAATAAATACCATAACAATGTATACAAGGATGC
TTTGTTAACCAGTTTCATTAACTCGGCTACCAGCTTTATAGCCGGCTTTG
TGATATTCTCCGTGCTGGGTTACATGGCCCACACACTGGGTGTAAGAATT
GAAGATGTTGCCACCGAAGGACCTGGTCTGGTTTTCGTGGTCTATCCAGC
TGCCATTGCCACCATGCCGGCCAGCACTTTCTGGGCTCTAATATTCTTCA
TGATGCTGCTAACTTTGGGCTTGGATAGTTCGTTTGGTGGTTCAGAGGCT
ATAATCACAGCTTTGAGCGACGAGTTTCCCAAGATCAAAAGAAACCGAGA
GCTGTTTGTAGCTGGACTGTTTTCCCTGTACTTCGTGGTCGGTTTGGCCA
GTTGCACTCAGGGTGGCTTCTATTTCTTCCATCTGCTGGATCGTTACGCT
GCTGGCTACTCGATTTTGGTGGCCGTGTTCTTTGAGGCAATCGCCGTGTC
CTGGATCTACGGAACCAATCGATTTAGCGAGGATATACGGGACATGATTG
GTTTTCCACCGGGAAGATACTGGCAGGTGTGTTGGCGATTTGTGGCACCA
ATTTTCCTGCTCTTCATCACGGTTTACGGGCTGATTGGCTACGAGCCACT
GACATATGCGGACTATGTGTATCCCAGTTGGGCCAATGCGCTGGGTTGGT
GCATAGCTGGTTCCTCGGTTGTGATGATTCCTGCCGTGGCGATATTTAAA
CTACTTTCCACGCCGGGAAGTCTGCGTCAGCGGTTCACAATTTTGACCAC
ACCATGGCGAGATCAGCAATCGATGGCAATGGTGCTGAACGGGGTCACCA
CCGAGGTCACCGTGGTGCGATTAACCGACACGGAGACCGCCAAGGAACCC
GTCGATGTCTGAAAGCTTTCTAGACCAT

BS07696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
DAT-RB 1935 CG8380-PB 1..1896 17..1912 9480 100 Plus
DAT-RA 1896 CG8380-PA 1..1896 17..1912 9480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
DAT-RB 3040 CG8380-RB 324..2219 17..1912 9480 100 Plus
DAT-RA 3040 CG8380-RA 324..2219 17..1912 9480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16559388..16560018 1912..1282 3155 100 Minus
2R 25286936 2R 16560373..16560751 1045..667 1895 100 Minus
2R 25286936 2R 16560073..16560315 1282..1040 1200 99.6 Minus
2R 25286936 2R 16563770..16563957 204..17 940 100 Minus
2R 25286936 2R 16560809..16560982 666..493 870 100 Minus
2R 25286936 2R 16561043..16561199 493..337 785 100 Minus
2R 25286936 2R 16561261..16561397 339..203 685 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:27:45 has no hits.

BS07696.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:35 Download gff for BS07696.complete
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 344..2238 17..1911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:18 Download gff for BS07696.complete
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 324..2218 17..1911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:05 Download gff for BS07696.complete
Subject Subject Range Query Range Percent Splice Strand
DAT-RA 324..2218 17..1911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:05 Download gff for BS07696.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16560809..16560981 494..666 100 <- Minus
2R 16561043..16561197 339..493 100 <- Minus
2R 16561262..16561396 204..338 100 <- Minus
2R 16563771..16563957 17..203 100   Minus
2R 16560374..16560751 667..1044 100 <- Minus
2R 16559389..16560017 1283..1911 100 <- Minus
2R 16560073..16560310 1045..1282 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:18 Download gff for BS07696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12446894..12447522 1283..1911 100 <- Minus
arm_2R 12447578..12447815 1045..1282 100 <- Minus
arm_2R 12447879..12448256 667..1044 100 <- Minus
arm_2R 12448314..12448486 494..666 100 <- Minus
arm_2R 12448548..12448702 339..493 100 <- Minus
arm_2R 12448767..12448901 204..338 100 <- Minus
arm_2R 12451276..12451462 17..203 100   Minus

BS07696.pep Sequence

Translation from 16 to 1911

> BS07696.pep
MSPTGHISKSKTPTPHDNDNNSISDERETWSGKVDFLLSVIGFAVDLANV
WRFPYLCYKNGGGAFLVPYGIMLVVGGIPLFYMELALGQHNRKGAITCWG
RLVPLFKGIGYAVVLIAFYVDFYYNVIIAWSLRFFFASFTNSLPWTSCNN
IWNTPNCRPFESQNASRVPVIGNYSDLYAMGNQSLLYNETYMNGSSLDTS
AVGHVEGFQSAASEYFNRYILELNRSEGIHDLGAIKWDMALCLLIVYLIC
YFSLWKGISTSGKVVWFTALFPYAVLLILLIRGLTLPGSFLGIQYYLTPN
FSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYHNNVYKDALLTSF
INSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGPGLVFVVYPAAIATM
PASTFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIKRNRELFVAG
LFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGT
NRFSEDIRDMIGFPPGRYWQVCWRFVAPIFLLFITVYGLIGYEPLTYADY
VYPSWANALGWCIAGSSVVMIPAVAIFKLLSTPGSLRQRFTILTTPWRDQ
QSMAMVLNGVTTEVTVVRLTDTETAKEPVDV*

BS07696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
DAT-PB 644 CG8380-PB 1..631 1..631 3334 100 Plus
DAT-PA 631 CG8380-PA 1..631 1..631 3334 100 Plus
SerT-PB 622 CG4545-PB 74..599 27..589 1551 50.8 Plus
SerT-PA 622 CG4545-PA 74..599 27..589 1551 50.8 Plus
CG1732-PA 636 CG1732-PA 28..608 5..593 1405 45.2 Plus