Clone Sequence Records
BS07702.3prime Sequence
753 bp (710 high quality bases) assembled on 2006-01-06
> BS07702.3prime
ATGGTCTAGAAAGCTTTCAGCTAAGAATTTTGGAGTGTGGATTTTCCCTT
CCATTTTTGCTGATCAGTGCATTGCGTCCTTCACTTTCCGTTGTACTGGT
CACGCCCATTAGTTTAAGATTATGAAGCAGAGCGCCCAAGTTAGAACGAT
CGTCCAAGTATTTGCTTTCTAATCGAACCATTCCGAGCTTCTTTGACTTT
GTCTGCGTGTGCCAAACCAGAATTTCGGTGCAGTTATTGCCGCGCGGCTC
AATCAGATTCATTTGAAGGCCAATGCTGCGCAGAAAGAGATCTTCTTCGT
AGCCGGGCTTGTACGGCATATTCACATAGGGATACTGCGCCATGTACTCC
AAATTCACTGCAAAACCGGCCATGTCAACGGGCCAGCGTCGACCGGCAAC
CCAGGAGTCCAGGAATGCTACAACCTTGCCTTTGCGCACAACTGGCCCGC
TGACCCCATAATCAGCAATAAGACCTACAGGAAACATGGAAACCCGTTGC
GTTTTCCGGATTTCAGAGAACAAACGCAGATCATAGGTGTTGTCGTCGTC
TCCGAAGTAAAGTATTCCGTTGGTGAGATTATGCTGCCGTATCCACTGCA
AGGCTGCCCTCCGATTTGCCACACCTCGCGGCGCTGGCTTTTCATTCCGG
AATTTGCTGGGCATCGGGCTGACCATGTGGGTAAAGGGCATACCAAATCG
ATAGAGCAGCGTGTCCATATAGTCATTGCATTTCTCTTGATCATCGGCCA
CCA
BS07702.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3881-PA | 984 | GlcAT-S-RA | 248..984 | 753..17 | 3685 | 100 | Minus |
CG3881-PB | 1230 | GlcAT-S-RB | 494..1230 | 753..17 | 3685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RC | 2116 | CG3881-RC | 1219..1955 | 753..17 | 3685 | 100 | Minus |
GlcAT-S-RB | 2406 | CG3881-RB | 988..1724 | 753..17 | 3685 | 100 | Minus |
GlcAT-S-RA | 1677 | CG3881-RA | 259..995 | 753..17 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9621957..9622309 | 430..78 | 1765 | 100 | Minus |
2L | 23513712 | 2L | 9621478..9621742 | 694..430 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 9622363..9622427 | 81..17 | 325 | 100 | Minus |
2L | 23513712 | 2L | 9621358..9621420 | 753..691 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:54:14 has no hits.
BS07702.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:54 Download gff for
BS07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PA | 249..984 | 17..752 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:47 Download gff for
BS07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PB | 495..1230 | 17..752 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:58:30 Download gff for
BS07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RA | 260..995 | 17..752 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:09 Download gff for
BS07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RA | 260..995 | 17..752 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:09 Download gff for
BS07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9621359..9621417 | 694..752 | 100 | -> | Minus |
2L | 9621479..9621741 | 431..693 | 100 | -> | Minus |
2L | 9621957..9622308 | 79..430 | 100 | -> | Minus |
2L | 9622366..9622427 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:58:30 Download gff for
BS07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9621359..9621417 | 694..752 | 100 | -> | Minus |
arm_2L | 9621479..9621741 | 431..693 | 100 | -> | Minus |
arm_2L | 9621957..9622308 | 79..430 | 100 | -> | Minus |
arm_2L | 9622366..9622427 | 17..78 | 100 | | Minus |
BS07702.5prime Sequence
874 bp (758 high quality bases) assembled on 2006-01-06
> BS07702.5prime
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCACCGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATGGGGGCAGCGGGCCAGTTTGTGCGCCAAGGCAAGGTTGTAGCATT
CCGGGACTCCCGGGTTGCCGGGCG
BS07702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3881-PB | 1230 | GlcAT-S-RB | 1..807 | 17..823 | 3985 | 99.7 | Plus |
CG3881-PA | 984 | GlcAT-S-RA | 33..561 | 295..823 | 2595 | 99.6 | Plus |
CG3881-PB | 1230 | GlcAT-S-RB | 806..854 | 823..871 | 170 | 93.8 | Plus |
CG3881-PA | 984 | GlcAT-S-RA | 560..608 | 823..871 | 170 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RB | 2406 | CG3881-RB | 495..1348 | 17..871 | 4175 | 99.3 | Plus |
GlcAT-S-RA | 1677 | CG3881-RA | 44..619 | 295..871 | 2785 | 99 | Plus |
GlcAT-S-RC | 2116 | CG3881-RC | 1006..1579 | 297..871 | 2775 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9617330..9617609 | 17..296 | 1400 | 100 | Plus |
2L | 23513712 | 2L | 9621143..9621420 | 295..572 | 1390 | 100 | Plus |
2L | 23513712 | 2L | 9621478..9621732 | 569..823 | 1245 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:36:07 has no hits.
BS07702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:55 Download gff for
BS07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PB | 1..857 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:48 Download gff for
BS07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PB | 1..857 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:54 Download gff for
BS07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 488..1351 | 8..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:40 Download gff for
BS07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 488..1351 | 8..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:40 Download gff for
BS07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9617323..9617609 | 8..296 | 98 | -> | Plus |
2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
2L | 9621479..9621741 | 570..833 | 98 | -> | Plus |
2L | 9621957..9621997 | 834..874 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:54 Download gff for
BS07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9617323..9617609 | 8..296 | 98 | -> | Plus |
arm_2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
arm_2L | 9621479..9621741 | 570..833 | 98 | -> | Plus |
arm_2L | 9621957..9621997 | 834..874 | 92 | | Plus |
BS07702.complete Sequence
1262 bp (1262 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635954
> BS07702.complete
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCAACGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATGGGGTCAGCGGGCCAGTTGTGCGCAAAGGCAAGGTTGTAGCATTC
CTGGACTCCTGGGTTGCCGGTCGACGCTGGCCCGTTGACATGGCCGGTTT
TGCAGTGAATTTGGAGTACATGGCGCAGTATCCCTATGTGAATATGCCGT
ACAAGCCCGGCTACGAAGAAGATCTCTTTCTGCGCAGCATTGGCCTTCAA
ATGAATCTGATTGAGCCGCGCGGCAATAACTGCACCGAAATTCTGGTTTG
GCACACGCAGACAAAGTCAAAGAAGCTCGGAATGGTTCGATTAGAAAGCA
AATACTTGGACGATCGTTCTAACTTGGGCGCTCTGCTTCATAATCTTAAA
CTAATGGGCGTGACCAGTACAACGGAAAGTGAAGGACGCAATGCACTGAT
CAGCAAAAATGGAAGGGAAAATCCACACTCCAAAATTCTTAGCTGAAAGC
TTTCTAGACCAT
BS07702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RB | 1230 | CG3881-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
GlcAT-S-RA | 984 | CG3881-PA | 33..984 | 295..1246 | 4760 | 100 | Plus |
GlcAT-S-RC | 1461 | CG3881-PC | 512..1461 | 297..1246 | 4750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RB | 2406 | CG3881-RB | 495..1724 | 17..1246 | 6150 | 100 | Plus |
GlcAT-S-RA | 1677 | CG3881-RA | 44..995 | 295..1246 | 4760 | 100 | Plus |
GlcAT-S-RC | 2116 | CG3881-RC | 1006..1955 | 297..1246 | 4750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9621957..9622309 | 833..1185 | 1765 | 100 | Plus |
2L | 23513712 | 2L | 9617330..9617609 | 17..296 | 1400 | 100 | Plus |
2L | 23513712 | 2L | 9621143..9621420 | 295..572 | 1390 | 100 | Plus |
2L | 23513712 | 2L | 9621478..9621742 | 569..833 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 9622363..9622427 | 1182..1246 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:26:01 has no hits.
BS07702.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:46 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:38 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 466..1702 | 8..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:58 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 495..1723 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:46 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 466..1702 | 8..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:25 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 495..1723 | 17..1245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:25 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9621957..9622308 | 833..1184 | 100 | -> | Plus |
2L | 9622366..9622426 | 1185..1245 | 100 | | Plus |
2L | 9617330..9617609 | 17..296 | 100 | -> | Plus |
2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
2L | 9621479..9621741 | 570..832 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:58 Download gff for
BS07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9617330..9617609 | 17..296 | 100 | -> | Plus |
arm_2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
arm_2L | 9621479..9621741 | 570..832 | 100 | -> | Plus |
arm_2L | 9621957..9622308 | 833..1184 | 100 | -> | Plus |
arm_2L | 9622366..9622426 | 1185..1245 | 100 | | Plus |
BS07702.pep Sequence
Translation from 16 to 1245
> BS07702.pep
MSSARLLESQTSDEDNEDIERRPHQSHSRSCSNNTTPTHPPHPMVRKGGV
ARRICLIGGALFLLLVALCYLTLSGDTRLGGSEDSEEGSHHGLDSMNFRP
LNETVHICSESYEDRRQFMQDKPQSDYVQLPVIYFVTPTYPRREQIPELT
RLAHTLLHIPRLHWLVADDQEKCNDYMDTLLYRFGMPFTHMVSPMPSKFR
NEKPAPRGVANRRAALQWIRQHNLTNGILYFGDDDNTYDLRLFSEIRKTQ
RVSMFPVGLIADYGVSGPVVRKGKVVAFLDSWVAGRRWPVDMAGFAVNLE
YMAQYPYVNMPYKPGYEEDLFLRSIGLQMNLIEPRGNNCTEILVWHTQTK
SKKLGMVRLESKYLDDRSNLGALLHNLKLMGVTSTTESEGRNALISKNGR
ENPHSKILS*
BS07702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-PB | 409 | CG3881-PB | 1..409 | 1..409 | 2176 | 100 | Plus |
GlcAT-S-PA | 327 | CG3881-PA | 12..327 | 94..409 | 1685 | 100 | Plus |
GlcAT-S-PC | 486 | CG3881-PC | 170..486 | 93..409 | 1680 | 99.4 | Plus |
GlcAT-P-PE | 316 | CG6207-PE | 68..301 | 131..363 | 607 | 47.7 | Plus |
GlcAT-P-PB | 316 | CG6207-PB | 68..301 | 131..363 | 607 | 47.7 | Plus |
GlcAT-S-PC | 486 | CG3881-PC | 1..93 | 1..93 | 491 | 100 | Plus |