Clone BS07702 Report

Search the DGRC for BS07702

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptGlcAT-S-RB
Protein status:BS07702.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07702.3prime Sequence

753 bp (710 high quality bases) assembled on 2006-01-06

> BS07702.3prime
ATGGTCTAGAAAGCTTTCAGCTAAGAATTTTGGAGTGTGGATTTTCCCTT
CCATTTTTGCTGATCAGTGCATTGCGTCCTTCACTTTCCGTTGTACTGGT
CACGCCCATTAGTTTAAGATTATGAAGCAGAGCGCCCAAGTTAGAACGAT
CGTCCAAGTATTTGCTTTCTAATCGAACCATTCCGAGCTTCTTTGACTTT
GTCTGCGTGTGCCAAACCAGAATTTCGGTGCAGTTATTGCCGCGCGGCTC
AATCAGATTCATTTGAAGGCCAATGCTGCGCAGAAAGAGATCTTCTTCGT
AGCCGGGCTTGTACGGCATATTCACATAGGGATACTGCGCCATGTACTCC
AAATTCACTGCAAAACCGGCCATGTCAACGGGCCAGCGTCGACCGGCAAC
CCAGGAGTCCAGGAATGCTACAACCTTGCCTTTGCGCACAACTGGCCCGC
TGACCCCATAATCAGCAATAAGACCTACAGGAAACATGGAAACCCGTTGC
GTTTTCCGGATTTCAGAGAACAAACGCAGATCATAGGTGTTGTCGTCGTC
TCCGAAGTAAAGTATTCCGTTGGTGAGATTATGCTGCCGTATCCACTGCA
AGGCTGCCCTCCGATTTGCCACACCTCGCGGCGCTGGCTTTTCATTCCGG
AATTTGCTGGGCATCGGGCTGACCATGTGGGTAAAGGGCATACCAAATCG
ATAGAGCAGCGTGTCCATATAGTCATTGCATTTCTCTTGATCATCGGCCA
CCA

BS07702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3881-PA 984 GlcAT-S-RA 248..984 753..17 3685 100 Minus
CG3881-PB 1230 GlcAT-S-RB 494..1230 753..17 3685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RC 2116 CG3881-RC 1219..1955 753..17 3685 100 Minus
GlcAT-S-RB 2406 CG3881-RB 988..1724 753..17 3685 100 Minus
GlcAT-S-RA 1677 CG3881-RA 259..995 753..17 3685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9621957..9622309 430..78 1765 100 Minus
2L 23513712 2L 9621478..9621742 694..430 1325 100 Minus
2L 23513712 2L 9622363..9622427 81..17 325 100 Minus
2L 23513712 2L 9621358..9621420 753..691 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:54:14 has no hits.

BS07702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:54 Download gff for BS07702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PA 249..984 17..752 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:47 Download gff for BS07702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PB 495..1230 17..752 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:58:30 Download gff for BS07702.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RA 260..995 17..752 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:09 Download gff for BS07702.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RA 260..995 17..752 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:09 Download gff for BS07702.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9621359..9621417 694..752 100 -> Minus
2L 9621479..9621741 431..693 100 -> Minus
2L 9621957..9622308 79..430 100 -> Minus
2L 9622366..9622427 17..78 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:58:30 Download gff for BS07702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9621359..9621417 694..752 100 -> Minus
arm_2L 9621479..9621741 431..693 100 -> Minus
arm_2L 9621957..9622308 79..430 100 -> Minus
arm_2L 9622366..9622427 17..78 100   Minus

BS07702.5prime Sequence

874 bp (758 high quality bases) assembled on 2006-01-06

> BS07702.5prime
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCACCGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATGGGGGCAGCGGGCCAGTTTGTGCGCCAAGGCAAGGTTGTAGCATT
CCGGGACTCCCGGGTTGCCGGGCG

BS07702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3881-PB 1230 GlcAT-S-RB 1..807 17..823 3985 99.7 Plus
CG3881-PA 984 GlcAT-S-RA 33..561 295..823 2595 99.6 Plus
CG3881-PB 1230 GlcAT-S-RB 806..854 823..871 170 93.8 Plus
CG3881-PA 984 GlcAT-S-RA 560..608 823..871 170 93.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RB 2406 CG3881-RB 495..1348 17..871 4175 99.3 Plus
GlcAT-S-RA 1677 CG3881-RA 44..619 295..871 2785 99 Plus
GlcAT-S-RC 2116 CG3881-RC 1006..1579 297..871 2775 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9617330..9617609 17..296 1400 100 Plus
2L 23513712 2L 9621143..9621420 295..572 1390 100 Plus
2L 23513712 2L 9621478..9621732 569..823 1245 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 06:36:07 has no hits.

BS07702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:20:55 Download gff for BS07702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PB 1..857 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:48 Download gff for BS07702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PB 1..857 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:54 Download gff for BS07702.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 488..1351 8..874 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:40 Download gff for BS07702.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 488..1351 8..874 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:40 Download gff for BS07702.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9617323..9617609 8..296 98 -> Plus
2L 9621145..9621417 297..569 100 -> Plus
2L 9621479..9621741 570..833 98 -> Plus
2L 9621957..9621997 834..874 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:54 Download gff for BS07702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9617323..9617609 8..296 98 -> Plus
arm_2L 9621145..9621417 297..569 100 -> Plus
arm_2L 9621479..9621741 570..833 98 -> Plus
arm_2L 9621957..9621997 834..874 92   Plus

BS07702.complete Sequence

1262 bp (1262 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635954

> BS07702.complete
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCAACGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATGGGGTCAGCGGGCCAGTTGTGCGCAAAGGCAAGGTTGTAGCATTC
CTGGACTCCTGGGTTGCCGGTCGACGCTGGCCCGTTGACATGGCCGGTTT
TGCAGTGAATTTGGAGTACATGGCGCAGTATCCCTATGTGAATATGCCGT
ACAAGCCCGGCTACGAAGAAGATCTCTTTCTGCGCAGCATTGGCCTTCAA
ATGAATCTGATTGAGCCGCGCGGCAATAACTGCACCGAAATTCTGGTTTG
GCACACGCAGACAAAGTCAAAGAAGCTCGGAATGGTTCGATTAGAAAGCA
AATACTTGGACGATCGTTCTAACTTGGGCGCTCTGCTTCATAATCTTAAA
CTAATGGGCGTGACCAGTACAACGGAAAGTGAAGGACGCAATGCACTGAT
CAGCAAAAATGGAAGGGAAAATCCACACTCCAAAATTCTTAGCTGAAAGC
TTTCTAGACCAT

BS07702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RB 1230 CG3881-PB 1..1230 17..1246 6150 100 Plus
GlcAT-S-RA 984 CG3881-PA 33..984 295..1246 4760 100 Plus
GlcAT-S-RC 1461 CG3881-PC 512..1461 297..1246 4750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RB 2406 CG3881-RB 495..1724 17..1246 6150 100 Plus
GlcAT-S-RA 1677 CG3881-RA 44..995 295..1246 4760 100 Plus
GlcAT-S-RC 2116 CG3881-RC 1006..1955 297..1246 4750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9621957..9622309 833..1185 1765 100 Plus
2L 23513712 2L 9617330..9617609 17..296 1400 100 Plus
2L 23513712 2L 9621143..9621420 295..572 1390 100 Plus
2L 23513712 2L 9621478..9621742 569..833 1325 100 Plus
2L 23513712 2L 9622363..9622427 1182..1246 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:26:01 has no hits.

BS07702.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:46 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:38 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 466..1702 8..1246 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:58 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 495..1723 17..1245 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:46 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 466..1702 8..1246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:25 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 495..1723 17..1245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:25 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9621957..9622308 833..1184 100 -> Plus
2L 9622366..9622426 1185..1245 100   Plus
2L 9617330..9617609 17..296 100 -> Plus
2L 9621145..9621417 297..569 100 -> Plus
2L 9621479..9621741 570..832 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:58 Download gff for BS07702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9617330..9617609 17..296 100 -> Plus
arm_2L 9621145..9621417 297..569 100 -> Plus
arm_2L 9621479..9621741 570..832 100 -> Plus
arm_2L 9621957..9622308 833..1184 100 -> Plus
arm_2L 9622366..9622426 1185..1245 100   Plus

BS07702.pep Sequence

Translation from 16 to 1245

> BS07702.pep
MSSARLLESQTSDEDNEDIERRPHQSHSRSCSNNTTPTHPPHPMVRKGGV
ARRICLIGGALFLLLVALCYLTLSGDTRLGGSEDSEEGSHHGLDSMNFRP
LNETVHICSESYEDRRQFMQDKPQSDYVQLPVIYFVTPTYPRREQIPELT
RLAHTLLHIPRLHWLVADDQEKCNDYMDTLLYRFGMPFTHMVSPMPSKFR
NEKPAPRGVANRRAALQWIRQHNLTNGILYFGDDDNTYDLRLFSEIRKTQ
RVSMFPVGLIADYGVSGPVVRKGKVVAFLDSWVAGRRWPVDMAGFAVNLE
YMAQYPYVNMPYKPGYEEDLFLRSIGLQMNLIEPRGNNCTEILVWHTQTK
SKKLGMVRLESKYLDDRSNLGALLHNLKLMGVTSTTESEGRNALISKNGR
ENPHSKILS*

BS07702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-PB 409 CG3881-PB 1..409 1..409 2176 100 Plus
GlcAT-S-PA 327 CG3881-PA 12..327 94..409 1685 100 Plus
GlcAT-S-PC 486 CG3881-PC 170..486 93..409 1680 99.4 Plus
GlcAT-P-PE 316 CG6207-PE 68..301 131..363 607 47.7 Plus
GlcAT-P-PB 316 CG6207-PB 68..301 131..363 607 47.7 Plus
GlcAT-S-PC 486 CG3881-PC 1..93 1..93 491 100 Plus