Clone BS07705 Report

Search the DGRC for BS07705

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:5
Vector:pDNR-Dual
Associated Gene/Transcript312-RA
Protein status:BS07705.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07705.3prime Sequence

756 bp (755 high quality bases) assembled on 2006-01-06

> BS07705.3prime
ATGGTCTAGAAAGCTTTTACGTCTTTAGTTTCGATTTGTCTACGAAAGAA
AGGGGTGTTTGAGCCATGAAAATATCGCCATAGGGATTGGTGGGTTTTTG
GCTTTCGCGGTCGAATTCGGAGCCAATGGCCCACAGCGACTCCAGATCGT
ATTCCTCGCGAGCACTCGGTGAAAATATGTGCAGGGCAATGTTGCCCAAG
TCCATGGCCATCCAATCCCGGCTCTTATCGCCCTCGATGCGCGGCAATAT
GTCACCCTTGCCCCGCTTGATCTTGAACATTCGGCGCACGAACTCCGCGG
TGGACAGCATGTGTCGGTAACTGCGACCACTGCAAACCACCAGGTGGTCA
ACGTACTTCAGGTTCTCCGGCACGTAGCAGACGAATATGTCGTCCACATT
CTCCTTGCGGAGCAGCTCCACCAAGTCCTCAACGTCGAACACTCCGCGAA
CACCTCGCTTTAAATTGAGGCCGTAATAGTGATCCAGCTCCAGGTCCGGC
TCTGGAAGTTGCTGCTCCTGGTGGCGTGCCTCTTCCACATCAAAAATCTC
CGTGGCTTCCTCATCGCGGAATATTTTGTACTTGTCTTGCACGCCGGCAA
CCAAAGTCTTTTCGGGATTGCCTTCGATTTCCTGGCCCTTCGCTGCCTGT
TGTGGCGGCTTGGAGAACTCGTGGTGGAAGCAACGCAGGACAGGCACACT
CAGGCGCCTGTCGTGCACTAGGCGGAACACGCGGGTCAGCATGTCGACTG
ATAACT

BS07705.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9166-PA 726 312-RA 1..726 742..17 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 873 CG9166-RB 71..798 742..15 3640 100 Minus
312-RA 1618 CG9166-RA 71..798 742..15 3640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351186..1351472 742..456 1435 100 Minus
3L 28110227 3L 1351529..1351790 456..195 1310 100 Minus
3L 28110227 3L 1351852..1352033 196..15 910 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:15:25 has no hits.

BS07705.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:21:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:56 Download gff for BS07705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9166-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:35:56 Download gff for BS07705.3prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..798 15..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:40 Download gff for BS07705.3prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..798 15..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:40 Download gff for BS07705.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1351180..1351471 457..749 98 -> Minus
3L 1351529..1351789 196..456 100 -> Minus
3L 1351853..1352033 15..195 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:35:56 Download gff for BS07705.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351180..1351471 457..749 98 -> Minus
arm_3L 1351529..1351789 196..456 100 -> Minus
arm_3L 1351853..1352033 15..195 100   Minus

BS07705.5prime Sequence

756 bp (755 high quality bases) assembled on 2006-01-06

> BS07705.5prime
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAN
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGTAAAAGCTTTC
TAGACC

BS07705.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9166-PA 726 312-RA 1..726 17..742 3611 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 873 CG9166-RB 71..798 17..744 3629 99.9 Plus
312-RA 1618 CG9166-RA 71..798 17..744 3629 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351186..1351472 17..303 1435 100 Plus
3L 28110227 3L 1351529..1351790 303..564 1310 100 Plus
3L 28110227 3L 1351852..1352033 563..744 899 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:23:49 has no hits.

BS07705.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:21:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:58 Download gff for BS07705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9166-PA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:10 Download gff for BS07705.5prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..798 10..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:39 Download gff for BS07705.5prime
Subject Subject Range Query Range Percent Splice Strand
312-RA 65..798 10..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:39 Download gff for BS07705.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1351180..1351471 10..302 98 -> Plus
3L 1351529..1351789 303..563 100 -> Plus
3L 1351853..1352033 564..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:10 Download gff for BS07705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351180..1351471 10..302 98 -> Plus
arm_3L 1351529..1351789 303..563 100 -> Plus
arm_3L 1351853..1352033 564..744 99   Plus

BS07705.complete Sequence

758 bp (758 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635955

> BS07705.complete
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAA
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGTAAAAGCTTTC
TAGACCAT

BS07705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 726 CG9166-PB 1..726 17..742 3630 100 Plus
312-RA 726 CG9166-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
312-RB 873 CG9166-RB 71..798 17..744 3640 100 Plus
312-RA 1618 CG9166-RA 71..798 17..744 3640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1351186..1351472 17..303 1435 100 Plus
3L 28110227 3L 1351529..1351790 303..564 1310 100 Plus
3L 28110227 3L 1351852..1352033 563..744 910 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:29:41 has no hits.

BS07705.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:47 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:39 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 42..775 10..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:54 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 71..794 17..740 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:47 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 42..775 10..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:12 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
312-RA 71..794 17..740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:12 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1351186..1351471 17..302 100 -> Plus
3L 1351529..1351789 303..563 100 -> Plus
3L 1351853..1352029 564..740 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:54 Download gff for BS07705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1351186..1351471 17..302 100 -> Plus
arm_3L 1351529..1351789 303..563 100 -> Plus
arm_3L 1351853..1352029 564..740 100   Plus

BS07705.pep Sequence

Translation from 16 to 741

> BS07705.pep
MLTRVFRLVHDRRLSVPVLRCFHHEFSKPPQQAAKGQEIEGNPEKTLVAG
VQDKYKIFRDEEATEIFDVEEARHQEQQLPEPDLELDHYYGLNLKRGVRG
VFDVEDLVELLRKENVDDIFVCYVPENLKYVDHLVVCSGRSYRHMLSTAE
FVRRMFKIKRGKGDILPRIEGDKSRDWMAMDLGNIALHIFSPSAREEYDL
ESLWAIGSEFDRESQKPTNPYGDIFMAQTPLSFVDKSKLKT*

BS07705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
312-PB 241 CG9166-PB 1..241 1..241 1267 100 Plus
312-PA 241 CG9166-PA 1..241 1..241 1267 100 Plus