Clone Sequence Records
BS07705.3prime Sequence
756 bp (755 high quality bases) assembled on 2006-01-06
> BS07705.3prime
ATGGTCTAGAAAGCTTTTACGTCTTTAGTTTCGATTTGTCTACGAAAGAA
AGGGGTGTTTGAGCCATGAAAATATCGCCATAGGGATTGGTGGGTTTTTG
GCTTTCGCGGTCGAATTCGGAGCCAATGGCCCACAGCGACTCCAGATCGT
ATTCCTCGCGAGCACTCGGTGAAAATATGTGCAGGGCAATGTTGCCCAAG
TCCATGGCCATCCAATCCCGGCTCTTATCGCCCTCGATGCGCGGCAATAT
GTCACCCTTGCCCCGCTTGATCTTGAACATTCGGCGCACGAACTCCGCGG
TGGACAGCATGTGTCGGTAACTGCGACCACTGCAAACCACCAGGTGGTCA
ACGTACTTCAGGTTCTCCGGCACGTAGCAGACGAATATGTCGTCCACATT
CTCCTTGCGGAGCAGCTCCACCAAGTCCTCAACGTCGAACACTCCGCGAA
CACCTCGCTTTAAATTGAGGCCGTAATAGTGATCCAGCTCCAGGTCCGGC
TCTGGAAGTTGCTGCTCCTGGTGGCGTGCCTCTTCCACATCAAAAATCTC
CGTGGCTTCCTCATCGCGGAATATTTTGTACTTGTCTTGCACGCCGGCAA
CCAAAGTCTTTTCGGGATTGCCTTCGATTTCCTGGCCCTTCGCTGCCTGT
TGTGGCGGCTTGGAGAACTCGTGGTGGAAGCAACGCAGGACAGGCACACT
CAGGCGCCTGTCGTGCACTAGGCGGAACACGCGGGTCAGCATGTCGACTG
ATAACT
BS07705.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9166-PA | 726 | 312-RA | 1..726 | 742..17 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 873 | CG9166-RB | 71..798 | 742..15 | 3640 | 100 | Minus |
312-RA | 1618 | CG9166-RA | 71..798 | 742..15 | 3640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1351186..1351472 | 742..456 | 1435 | 100 | Minus |
3L | 28110227 | 3L | 1351529..1351790 | 456..195 | 1310 | 100 | Minus |
3L | 28110227 | 3L | 1351852..1352033 | 196..15 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:15:25 has no hits.
BS07705.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:21:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:56 Download gff for
BS07705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9166-PA | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:35:56 Download gff for
BS07705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..798 | 15..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:40 Download gff for
BS07705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..798 | 15..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:40 Download gff for
BS07705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1351180..1351471 | 457..749 | 98 | -> | Minus |
3L | 1351529..1351789 | 196..456 | 100 | -> | Minus |
3L | 1351853..1352033 | 15..195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:35:56 Download gff for
BS07705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1351180..1351471 | 457..749 | 98 | -> | Minus |
arm_3L | 1351529..1351789 | 196..456 | 100 | -> | Minus |
arm_3L | 1351853..1352033 | 15..195 | 100 | | Minus |
BS07705.5prime Sequence
756 bp (755 high quality bases) assembled on 2006-01-06
> BS07705.5prime
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAN
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGTAAAAGCTTTC
TAGACC
BS07705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9166-PA | 726 | 312-RA | 1..726 | 17..742 | 3611 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 873 | CG9166-RB | 71..798 | 17..744 | 3629 | 99.9 | Plus |
312-RA | 1618 | CG9166-RA | 71..798 | 17..744 | 3629 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1351186..1351472 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 1351529..1351790 | 303..564 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 1351852..1352033 | 563..744 | 899 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:23:49 has no hits.
BS07705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:21:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:13:58 Download gff for
BS07705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9166-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:10 Download gff for
BS07705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..798 | 10..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:39 Download gff for
BS07705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 65..798 | 10..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:39 Download gff for
BS07705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1351180..1351471 | 10..302 | 98 | -> | Plus |
3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
3L | 1351853..1352033 | 564..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:10 Download gff for
BS07705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1351180..1351471 | 10..302 | 98 | -> | Plus |
arm_3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
arm_3L | 1351853..1352033 | 564..744 | 99 | | Plus |
BS07705.complete Sequence
758 bp (758 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635955
> BS07705.complete
GAAGTTATCAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACA
GGCGCCTGAGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAG
CCGCCACAACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAA
GACTTTGGTTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGG
AAGCCACGGAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAA
CTTCCAGAGCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAA
GCGAGGTGTTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCC
GCAAGGAGAATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTG
AAGTACGTTGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACAT
GCTGTCCACCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCA
AGGGTGACATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATG
GCCATGGACTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCG
CGAGGAATACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACC
GCGAAAGCCAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAA
ACACCCCTTTCTTTCGTAGACAAATCGAAACTAAAGACGTAAAAGCTTTC
TAGACCAT
BS07705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 726 | CG9166-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
312-RA | 726 | CG9166-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-RB | 873 | CG9166-RB | 71..798 | 17..744 | 3640 | 100 | Plus |
312-RA | 1618 | CG9166-RA | 71..798 | 17..744 | 3640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1351186..1351472 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 1351529..1351790 | 303..564 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 1351852..1352033 | 563..744 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:29:41 has no hits.
BS07705.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:47 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:39 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 42..775 | 10..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:54 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 71..794 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:47 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 42..775 | 10..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:12 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
312-RA | 71..794 | 17..740 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:12 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1351186..1351471 | 17..302 | 100 | -> | Plus |
3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
3L | 1351853..1352029 | 564..740 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:54 Download gff for
BS07705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1351186..1351471 | 17..302 | 100 | -> | Plus |
arm_3L | 1351529..1351789 | 303..563 | 100 | -> | Plus |
arm_3L | 1351853..1352029 | 564..740 | 100 | | Plus |
BS07705.pep Sequence
Translation from 16 to 741
> BS07705.pep
MLTRVFRLVHDRRLSVPVLRCFHHEFSKPPQQAAKGQEIEGNPEKTLVAG
VQDKYKIFRDEEATEIFDVEEARHQEQQLPEPDLELDHYYGLNLKRGVRG
VFDVEDLVELLRKENVDDIFVCYVPENLKYVDHLVVCSGRSYRHMLSTAE
FVRRMFKIKRGKGDILPRIEGDKSRDWMAMDLGNIALHIFSPSAREEYDL
ESLWAIGSEFDRESQKPTNPYGDIFMAQTPLSFVDKSKLKT*
BS07705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
312-PB | 241 | CG9166-PB | 1..241 | 1..241 | 1267 | 100 | Plus |
312-PA | 241 | CG9166-PA | 1..241 | 1..241 | 1267 | 100 | Plus |