Clone BS07706 Report

Search the DGRC for BS07706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptcry-RA
Protein status:BS07706.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07706.3prime Sequence

866 bp (864 high quality bases) assembled on 2006-01-06

> BS07706.3prime
ATGGTCTAGAAAGCTTTCAAACCACCACGTCGGCCAGCCAGAAGAACTGA
CGCACTTCCTCCTCGTTGGATGGTCGGCAATGCGGCGGCGGGGTGATCAG
CGAATTTCGGAGAGACTTCATGGCCAGCATGTTTCGCTTTACGGCCATGG
ACAAATCAATGATCCGCTCCGGATAATGGACTCCGATCAGGCACTCGTAC
TGCTCCTGCTGCTCGGCAGACATTCGCCAGGGCTCGTGAACAAATTCCTT
GGGCACATTCATCAACTCCGGGACGTACTGCTTGATGTAGGTGCCATCCG
GATCAAGTCGCTTGGCCAATGCCACCGGGCAGGTGACCAGGGAGGAGTCC
AGCAGCCTTTCAAACGCCGAGCTGGATACCCACATCCAGTTGCCAGCGCA
GACCGACCAATCCGCATCCAGCAGATACTTCAGAAAGTGCTGCAGTCCAT
GCTCCCAGCTCTGCCACAAACCGCCGCGCGTGAGAAAGGTGGCCACGGTG
TTGCGCAGCGTATGGTGGAGCCATCCCTCGGCCAGGAGTTGTCGCATGGC
GCCGTCGATGAGCGGGAATCCCGTTTGGCCTAAACGCCAGCTCTGCAGGA
GATTTTCGTTCGGCTTAGCCCACGGGATGCTCAGGCAGATGTCATTGCCC
TCCATGCGATCGTAGTTTGGATTGTTCACCGACATGGTGTAGAAGTACTC
TCGCCAGATCAACTGTCCCGTGATGTGCGCGCCGCCAGTCATCTGAACGC
CCCGCACACAGGCGCGCAACTGGACATTCTTGAAGAGATCGTGGACGCTC
CAGTAGAAGCGACGTACCGAAAGGCAACCAAAGCGCAGATGGGCGCTCAT
CGATTTTGGCGAGTCG

BS07706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3772-PA 1629 cry-RA 780..1629 866..17 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1896 CG3772-RA 967..1817 866..16 4255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19214277..19214903 866..240 3135 100 Minus
3R 32079331 3R 19215140..19215363 239..16 1120 100 Minus
Blast to na_te.dros performed on 2015-02-08 15:03:10 has no hits.

BS07706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:02 Download gff for BS07706.3prime
Subject Subject Range Query Range Percent Splice Strand
cry-PA 780..1629 17..866 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:00 Download gff for BS07706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3772-PA 780..1629 17..866 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:01:54 Download gff for BS07706.3prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 928..1778 16..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:14 Download gff for BS07706.3prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 967..1817 16..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:14 Download gff for BS07706.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19214277..19214903 240..866 100 -> Minus
3R 19215140..19215363 16..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:01:54 Download gff for BS07706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15039999..15040625 240..866 100 -> Minus
arm_3R 15040862..15041085 16..239 100   Minus

BS07706.5prime Sequence

940 bp (830 high quality bases) assembled on 2006-01-06

> BS07706.5prime
GAAGTTATCAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTC
GCCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCC
GATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGA
GAGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGG
ACTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGT
GGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCT
ACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGC
CAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTG
AATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATT
GGTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCC
TGCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCT
CGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAG
TCTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATG
GAGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACA
CAGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTT
TGAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACT
CGCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGT
CGCTTCTACTGGAGCGTCCACGATCTCTTCAGAATGTCCAGTTGCGCGCC
TGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCA

BS07706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3772-PA 1629 cry-RA 1..865 17..881 4325 100 Plus
CG3772-PA 1629 cry-RA 866..925 881..940 300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1896 CG3772-RA 188..1112 17..940 4600 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19213983..19214422 502..940 2150 99.8 Plus
3R 32079331 3R 19213481..19213827 156..502 1735 100 Plus
3R 32079331 3R 19212341..19212485 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:09:42 has no hits.

BS07706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:04 Download gff for BS07706.5prime
Subject Subject Range Query Range Percent Splice Strand
cry-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:02 Download gff for BS07706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3772-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:48 Download gff for BS07706.5prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 143..1072 8..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:12 Download gff for BS07706.5prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 182..1111 8..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:12 Download gff for BS07706.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19212335..19212482 8..158 97 -> Plus
3R 19213484..19213827 159..502 100 -> Plus
3R 19213984..19214421 503..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:48 Download gff for BS07706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15038057..15038204 8..158 97 -> Plus
arm_3R 15039206..15039549 159..502 100 -> Plus
arm_3R 15039706..15040143 503..939 99   Plus

BS07706.complete Sequence

1661 bp (1661 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635956

> BS07706.complete
GAAGTTATCAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTC
GCCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCC
GATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGA
GAGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGG
ACTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGT
GGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCT
ACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGC
CAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTG
AATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATT
GGTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCC
TGCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCT
CGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAG
TCTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATG
GAGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACA
CAGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTT
TGAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACT
CGCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGT
CGCTTCTACTGGAGCGTCCACGATCTCTTCAAGAATGTCCAGTTGCGCGC
CTGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGT
TGATCTGGCGAGAGTACTTCTACACCATGTCGGTGAACAATCCAAACTAC
GATCGCATGGAGGGCAATGACATCTGCCTGAGCATCCCGTGGGCTAAGCC
GAACGAAAATCTCCTGCAGAGCTGGCGTTTAGGCCAAACGGGATTCCCGC
TCATCGACGGCGCCATGCGACAACTCCTGGCCGAGGGATGGCTCCACCAT
ACGCTGCGCAACACCGTGGCCACCTTTCTCACGCGCGGCGGTTTGTGGCA
GAGCTGGGAGCATGGACTGCAGCACTTTCTGAAGTATCTGCTGGATGCGG
ATTGGTCGGTCTGCGCTGGCAACTGGATGTGGGTATCCAGCTCGGCGTTT
GAAAGGCTGCTGGACTCCTCCCTGGTCACCTGCCCGGTGGCATTGGCCAA
GCGACTTGATCCGGATGGCACCTACATCAAGCAGTACGTCCCGGAGTTGA
TGAATGTGCCCAAGGAATTTGTTCACGAGCCCTGGCGAATGTCTGCCGAG
CAGCAGGAGCAGTACGAGTGCCTGATCGGAGTCCATTATCCGGAGCGGAT
CATTGATTTGTCCATGGCCGTAAAGCGAAACATGCTGGCCATGAAGTCTC
TCCGAAATTCGCTGATCACCCCGCCGCCGCATTGCCGACCATCCAACGAG
GAGGAAGTGCGTCAGTTCTTCTGGCTGGCCGACGTGGTGGTTTGAAAGCT
TTCTAGACCAT

BS07706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1629 CG3772-PA 1..1629 17..1645 8145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1896 CG3772-RA 188..1817 17..1646 8150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19213983..19214903 502..1422 4605 100 Plus
3R 32079331 3R 19213481..19213827 156..502 1735 100 Plus
3R 32079331 3R 19215140..19215363 1423..1646 1120 100 Plus
3R 32079331 3R 19212341..19212485 17..161 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:55:35 has no hits.

BS07706.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:34 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 17..1645 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:26 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 143..1778 8..1646 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:45 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 149..1776 17..1644 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:34 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 143..1778 8..1646 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:13 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 188..1815 17..1644 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:13 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19215140..19215361 1423..1644 100   Plus
3R 19212341..19212482 17..158 100 -> Plus
3R 19213484..19213827 159..502 100 -> Plus
3R 19213984..19214903 503..1422 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:45 Download gff for BS07706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15038063..15038204 17..158 100 -> Plus
arm_3R 15039206..15039549 159..502 100 -> Plus
arm_3R 15039706..15040625 503..1422 100 -> Plus
arm_3R 15040862..15041083 1423..1644 100   Plus

BS07706.pep Sequence

Translation from 16 to 1644

> BS07706.pep
MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK
NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR
LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN
GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE
QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY
LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV
QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL
QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG
LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD
GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM
AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVV*

BS07706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
cry-PA 542 CG3772-PA 1..542 1..542 2924 100 Plus
phr6-4-PD 540 CG2488-PD 5..494 4..509 850 37.9 Plus
phr6-4-PC 540 CG2488-PC 5..494 4..509 850 37.9 Plus
phr6-4-PB 540 CG2488-PB 5..494 4..509 850 37.9 Plus
phr6-4-PA 540 CG2488-PA 5..494 4..509 850 37.9 Plus