Clone Sequence Records
BS07708.3prime Sequence
837 bp (770 high quality bases) assembled on 2006-01-06
> BS07708.3prime
ATGGTCTAGAAAGCTTTTACGCTTCCAGATCGTTAACGAACAGCACCTCG
CGGTTCTTGAGTCCTACGGCCTGAAGGGTTTTGGTCAGCGTCTCCTTGGC
TGTGCCTGTTTCCCCAGCGGCATCCAAGTTCGCTTTCGAGAAGAGCACGC
GCTTCGGGAAATTCGTTGTGATCTCGAACTCATCCGGCGAATCGGGATGG
CAGAAGAGATAGTGATAAACGTCAAGCACCGAATCCGTCTGGTTAAATCG
GCGCTCTAGGCGTGTTCCACTGGGCAGCTTGAATACAACTGCAATGGCGC
CGACAGCATCCGCTGCCGGCTCGGATGGCACCAATGTGGCCAGCTCGATC
TTTTGCCGGGCAATCTCCTCCTTGCGAAGCTCGACATCGCGTCGAGCTTG
TTCCACAGCCTCCTCCGCCTGCCGGACGGCATCCCGCTCCCTTTGCCGCT
GACGCTCCTTCTCCTCGTCCGCAAGCAAACTCTGCTCGTATGCCTCGTCC
TGCTGTCTTCTTAAAGTCTGTGTAAAATTCCGCTCTAAGCGATCTGCACG
CGCTTGACTCAGCCACACCTCGTTGGCGTTCGTCACCGACTGGAGGCGAC
GGAGCAGCTCTTCGGGCGTGCAATCCCCCTCGAAACGTCCGACGATCATC
ATGCGATTTGCTCGAAGGCTGATCATCACCATCGTTGGGTAGCTGCGCAC
CGTTATCGACTGCATCACCCGGTAGCCCTCCGGCGTGGCTACGTCGCATC
CCCATAACAGGGTGTGTGTGTTAATGTAGTCAATGACCGATCTCGCCGAC
AGTGTGTTGCGGCAGAAGGATTCCACATCTGGGTTCT
BS07708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10372-PA | 1395 | Faf-RA | 575..1395 | 837..17 | 4105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faf-RB | 2279 | CG10372-RB | 936..1756 | 837..17 | 4105 | 100 | Minus |
| Faf-RA | 1978 | CG10372-RA | 1025..1845 | 837..17 | 4105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18706796..18707410 | 223..837 | 3075 | 100 | Plus |
| 2L | 23513712 | 2L | 18706533..18706739 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:04:25 has no hits.
BS07708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:07 Download gff for
BS07708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-PA | 575..1395 | 17..837 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:05 Download gff for
BS07708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10372-PA | 575..1395 | 17..837 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:19 Download gff for
BS07708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 1025..1851 | 13..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:41 Download gff for
BS07708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 1025..1851 | 13..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:41 Download gff for
BS07708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18706527..18706739 | 13..223 | 99 | <- | Plus |
| 2L | 18706797..18707410 | 224..837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:19 Download gff for
BS07708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18706527..18706739 | 13..223 | 99 | <- | Plus |
| arm_2L | 18706797..18707410 | 224..837 | 100 | | Plus |
BS07708.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-01-06
> BS07708.5prime
GAAGTTATCAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGG
AGAAGGTCCTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTC
TGCCGCGACGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCA
GGAGCAGCTAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTA
CAGATGTCCGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTG
TTTTCCGCCAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGG
CCCCGTTCCCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCG
TGTTTCAGTACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTG
AACCTGGGCGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGA
TGTGATGAAGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGG
TCTTCTATCAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAG
CTGCGTTTTCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGA
TGTGGAATCCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACT
ACATTAACACACACACCCTGTTATGGGGATGCGACGTAGCCACGCCGGAG
GGCTACCGGGTGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGT
GATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAGG
GGGATTGCACGCC
BS07708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10372-PA | 1395 | Faf-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faf-RB | 2279 | CG10372-RB | 362..1158 | 17..813 | 3985 | 100 | Plus |
| Faf-RA | 1978 | CG10372-RA | 451..1247 | 17..813 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18707188..18707863 | 813..138 | 3380 | 100 | Minus |
| 2L | 23513712 | 2L | 18708114..18708238 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:08:17 has no hits.
BS07708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:08 Download gff for
BS07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:07 Download gff for
BS07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10372-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:55:10 Download gff for
BS07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 443..1247 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:59:57 Download gff for
BS07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 443..1247 | 9..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:59:57 Download gff for
BS07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18707188..18707861 | 140..813 | 100 | <- | Minus |
| 2L | 18708116..18708246 | 9..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:55:10 Download gff for
BS07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18707188..18707861 | 140..813 | 100 | <- | Minus |
| arm_2L | 18708116..18708246 | 9..139 | 96 | | Minus |
BS07708.complete Sequence
1427 bp (1427 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635957
> BS07708.complete
GAAGTTATCAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGG
AGAAGGTCCTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTC
TGCCGCGACGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCA
GGAGCAGCTAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTA
CAGATGTCCGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTG
TTTTCCGCCAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGG
CCCCGTTCCCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCG
TGTTTCAGTACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTG
AACCTGGGCGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGA
TGTGATGAAGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGG
TCTTCTATCAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAG
CTGCGTTTTCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGA
TGTGGAATCCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACT
ACATTAACACACACACCCTGTTATGGGGATGCGACGTAGCCACGCCGGAG
GGCTACCGGGTGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGT
GATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAGG
GGGATTGCACGCCCGAAGAGCTGCTCCGTCGCCTCCAGTCGGTGACGAAC
GCCAACGAGGTGTGGCTGAGTCAAGCGCGTGCAGATCGCTTAGAGCGGAA
TTTTACACAGACTTTAAGAAGACAGCAGGACGAGGCATACGAGCAGAGTT
TGCTTGCGGACGAGGAGAAGGAGCGTCAGCGGCAAAGGGAGCGGGATGCC
GTCCGGCAGGCGGAGGAGGCTGTGGAACAAGCTCGACGCGATGTCGAGCT
TCGCAAGGAGGAGATTGCCCGGCAAAAGATCGAGCTGGCCACATTGGTGC
CATCCGAGCCGGCAGCGGATGCTGTCGGCGCCATTGCAGTTGTATTCAAG
CTGCCCAGTGGAACACGCCTAGAGCGCCGATTTAACCAGACGGATTCGGT
GCTTGACGTTTATCACTATCTCTTCTGCCATCCCGATTCGCCGGATGAGT
TCGAGATCACAACGAATTTCCCGAAGCGCGTGCTCTTCTCGAAAGCGAAC
TTGGATGCCGCTGGGGAAACAGGCACAGCCAAGGAGACGCTGACCAAAAC
CCTTCAGGCCGTAGGACTCAAGAACCGCGAGGTGCTGTTCGTTAACGATC
TGGAAGCGTAAAAGCTTTCTAGACCAT
BS07708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faf-RB | 1395 | CG10372-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
| Faf-RA | 1395 | CG10372-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faf-RB | 2279 | CG10372-RB | 362..1756 | 17..1411 | 6975 | 100 | Plus |
| Faf-RA | 1978 | CG10372-RA | 451..1845 | 17..1411 | 6975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18706796..18707863 | 1205..138 | 5340 | 100 | Minus |
| 2L | 23513712 | 2L | 18706533..18706739 | 1411..1205 | 1035 | 100 | Minus |
| 2L | 23513712 | 2L | 18708114..18708238 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:46:43 has no hits.
BS07708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:24 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 1..1395 | 17..1411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:25 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 443..1851 | 9..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:02 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 451..1843 | 17..1409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:24 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 443..1851 | 9..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:11 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 451..1843 | 17..1409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:11 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18706535..18706739 | 1205..1409 | 100 | <- | Minus |
| 2L | 18706797..18707861 | 140..1204 | 100 | <- | Minus |
| 2L | 18708116..18708238 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:02 Download gff for
BS07708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18706535..18706739 | 1205..1409 | 100 | <- | Minus |
| arm_2L | 18706797..18707861 | 140..1204 | 100 | <- | Minus |
| arm_2L | 18708116..18708238 | 17..139 | 100 | | Minus |
BS07708.pep Sequence
Translation from 16 to 1410
> BS07708.pep
MEADGLTNEQTEKVLQFQDLTGIEDMNVCRDVLIRHQWDLEVAFQEQLNI
REGRPTMFAASTDVRAPAVLNDRFLQQVFSANMPGGRTVSRVPSGPVPRS
FTGIIGYVINFVFQYFYSTLTSIVSAFVNLGGGNEARLVTDPLGDVMKFI
REYYERYPEHPVFYQGTYAQALNDAKQELRFLIVYLHKDPAKNPDVESFC
RNTLSARSVIDYINTHTLLWGCDVATPEGYRVMQSITVRSYPTMVMISLR
ANRMMIVGRFEGDCTPEELLRRLQSVTNANEVWLSQARADRLERNFTQTL
RRQQDEAYEQSLLADEEKERQRQRERDAVRQAEEAVEQARRDVELRKEEI
ARQKIELATLVPSEPAADAVGAIAVVFKLPSGTRLERRFNQTDSVLDVYH
YLFCHPDSPDEFEITTNFPKRVLFSKANLDAAGETGTAKETLTKTLQAVG
LKNREVLFVNDLEA*
BS07708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faf-PB | 464 | CG10372-PB | 1..464 | 1..464 | 2379 | 100 | Plus |
| Faf-PA | 464 | CG10372-PA | 1..464 | 1..464 | 2379 | 100 | Plus |
| casp-PC | 690 | CG8400-PC | 364..665 | 141..423 | 194 | 23.5 | Plus |
| casp-PB | 695 | CG8400-PB | 369..670 | 141..423 | 194 | 23.5 | Plus |
| casp-PA | 695 | CG8400-PA | 369..670 | 141..423 | 194 | 23.5 | Plus |
