Clone Sequence Records
BS07709.3prime Sequence
911 bp (754 high quality bases) assembled on 2006-01-06
> BS07709.3prime
ATGGTCTAGAAAGCTTTCACAAGACCTGCTCCTGTTCCGCCTCCGAGGAC
AAGGAGCGACTGTCCGGAGAGGCCGCGCTCAGGCTGTCAACTAGGTCGCC
CGTGTAAAAGAGCACCGCCTTCGGGACGATTTGGGTGCGTAGCAGGAAGC
CCACTTCGAAATCGTTGCCAAGGATCAGCTTGGTCTTTTCATCCGCGAGC
GACAGGTCCAAGGCCTGCGGCGGAGCAAAGAAGCGAAAGAAGGACTCCCG
AGGCATGACCTTGGTGACTCGGTGTGCTCTGTTCCTTCGCCTGCTTTCCA
CCGTTTGGAGAGTGAGATTGGAGCCATCGCGCCAGTGGATGTGGCAGCCT
TCGCAACGAACTATTTCGGGCCCTTCGAACAGAAAGGGATACTCCGGGTC
CGCCGAGTGCTGCAGAAAGTAGCGCTTCGTGAGCAGCAGCGAGGAATCGT
GCAGGAAGCTATTGGGCCGAAACTGAAAGATGACCATGTAGCTGTCCTGG
TCGTAAGCCAGGCGCACATCCATTAGGCTCTCCAGAAGCGGCTCGTCGTG
ATCCTGGACCAACTCCGAGAGCAGGGGCACGTTCTGGAAAACTGTCAGCC
AAAAGCGTGGAACACCCAGCGTAGTCGGCGAAACCGGAGCCAGTTTTTGC
CTCAGCTGTCGCAGCTCCTCGTTGTTCCCGAAGTCCAGGTACAGAGCATC
CTGCGGGTCCTCGGGCCAGGTCTTCTCCGTTTGGATCGGTGGCTCCACCG
AACCCTCCAAAATATCCCGCCTCGCATCGAAGAGCGCGCAGCTCTGGCCG
TAGAAACGTCGCTCCAGCTCGTAGACTTCCCGGAAGAACTGCTCCGAAAT
GCGTACCTGTTGCAGCTGATTGTGCCGCAGTGCCCGTATGCGGTTCTGCA
CGGGCTCCGCC
BS07709.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-PA | 1128 | CG3708-RA | 234..1128 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1301 | CG3708-RB | 309..1203 | 911..17 | 4475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 928896..929790 | 17..911 | 4475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:40:05 has no hits.
BS07709.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:09 Download gff for
BS07709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 234..1128 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:08 Download gff for
BS07709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 234..1128 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:37:23 Download gff for
BS07709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 309..1207 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:31 Download gff for
BS07709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 309..1207 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:31 Download gff for
BS07709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 928892..929790 | 13..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:37:23 Download gff for
BS07709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 822925..823823 | 13..911 | 99 | | Plus |
BS07709.5prime Sequence
934 bp (786 high quality bases) assembled on 2006-01-06
> BS07709.5prime
GAAGTTATCAGTCGACATGTTGCCAAATTTCGAAGTTATTGCACCGAATT
GCACAATGATTGGGATGGCTGACAGCGCGGAGGGGGTTACCCAGGAAGAC
AGCCACACGGAGTCGAGGGCAGACGGCATCAGCGGGTCCTTGCGCTCCCT
GGGCACATATACCCAGGAGTCCACAGAGCCGGCTTTGAGTCCGGCGGACC
TTCCCGCCCGCAGCCGGAAGGCCTTTCTGCGGCACATGATCGGCCAGCTG
GCGGAGCCCGTGCAGAACCGCATACGGGCACTGCGGCACAATCAGCTGCA
ACAGGTACGCATTTCGGAGCAGTTCTTCCGGGAAGTCTACGAGCTGGAGC
GACGTTTCTACGGCCAGAGCTGCGCGCTCTTCGATGCGAGGCGGGATATT
TTGGAGGGTTCGGTGGAGCCACCGATCCAAACGGAGAAGACCTGGCCCGA
GGACCCGCAGGATGCTCTGTACCTGGACTTCGGGAACAACGAGGAGCTGC
GACAGCTGAGGCAAAAACTGGCTCCGGTTTCGCCGACTACGCTGGGTGTT
CCACGCTTTTGGCTGACAGTTTTCCAGAACGTGCCCCTGCTCTCGGAGTT
GGTCCAGGATCACGACGAGCCGCTTCTGGAGAGCCTAATGGATGTGCGCC
TGGCTTACGACCAGGACAGCTACATGGTCATCTTTCAGTTTCGGCCCAAT
AGCTTCCTGCACGATTCCTCGCTGCTGCTCACGAAGCGCTACTTTCTGCA
GCACTCGGCGGACCCGGAGTATCCCTTTCTGTTCGAAGGGCCCGAAATAG
TTCGTTGCGAAGGCTGCCACATCCACTGGCGCGATGGCTCCAATCTCACT
CTCCAAACGGTGGAAAGCAGGCGAAGGAACAGAGCACACCGAGTCACCCA
GGTCATGCCTCGGGAAGTCTTCTTTCGCTTCTTT
BS07709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-PA | 1128 | CG3708-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1301 | CG3708-RB | 76..993 | 17..934 | 4530 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 929106..930023 | 934..17 | 4530 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:15:53 has no hits.
BS07709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:10 Download gff for
BS07709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:09 Download gff for
BS07709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:05:01 Download gff for
BS07709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 71..993 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:20 Download gff for
BS07709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 71..993 | 9..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:20 Download gff for
BS07709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 929106..930028 | 9..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:05:01 Download gff for
BS07709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 823139..824061 | 9..934 | 99 | | Minus |
BS07709.complete Sequence
1160 bp (1160 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635958
> BS07709.complete
GAAGTTATCAGTCGACATGTTGCCAAATTTCGAAGTTATTGCACCGAATT
GCACAATGATTGGGATGGCTGACAGCGCGGAGGGGGTTACCCAGGAAGAC
AGCCACACGGAGTCGAGGGCAGACGGCATCAGCGGGTCCTTGCGCTCCCT
GGGCACATATACCCAGGAGTCCACAGAGCCGGCTTTGAGTCCGGCGGACC
TTCCCGCCCGCAGCCGGAAGGCCTTTCTGCGGCACATGATCGGCCAGCTG
GCGGAGCCCGTGCAGAACCGCATACGGGCACTGCGGCACAATCAGCTGCA
ACAGGTACGCATTTCGGAGCAGTTCTTCCGGGAAGTCTACGAGCTGGAGC
GACGTTTCTACGGCCAGAGCTGCGCGCTCTTCGATGCGAGGCGGGATATT
TTGGAGGGTTCGGTGGAGCCACCGATCCAAACGGAGAAGACCTGGCCCGA
GGACCCGCAGGATGCTCTGTACCTGGACTTCGGGAACAACGAGGAGCTGC
GACAGCTGAGGCAAAAACTGGCTCCGGTTTCGCCGACTACGCTGGGTGTT
CCACGCTTTTGGCTGACAGTTTTCCAGAACGTGCCCCTGCTCTCGGAGTT
GGTCCAGGATCACGACGAGCCGCTTCTGGAGAGCCTAATGGATGTGCGCC
TGGCTTACGACCAGGACAGCTACATGGTCATCTTTCAGTTTCGGCCCAAT
AGCTTCCTGCACGATTCCTCGCTGCTGCTCACGAAGCGCTACTTTCTGCA
GCACTCGGCGGACCCGGAGTATCCCTTTCTGTTCGAAGGGCCCGAAATAG
TTCGTTGCGAAGGCTGCCACATCCACTGGCGCGATGGCTCCAATCTCACT
CTCCAAACGGTGGAAAGCAGGCGAAGGAACAGAGCACACCGAGTCACCAA
GGTCATGCCTCGGGAGTCCTTCTTTCGCTTCTTTGCTCCGCCGCAGGCCT
TGGACCTGTCGCTCGCGGATGAAAAGACCAAGCTGATCCTTGGCAACGAT
TTCGAAGTGGGCTTCCTGCTACGCACCCAAATCGTCCCGAAGGCGGTGCT
CTTTTACACGGGCGACCTAGTTGACAGCCTGAGCGCGGCCTCTCCGGACA
GTCGCTCCTTGTCCTCGGAGGCGGAACAGGAGCAGGTCTTGTGAAAGCTT
TCTAGACCAT
BS07709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1089 | CG3708-PB | 1..1089 | 56..1144 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1301 | CG3708-RB | 76..1203 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 928896..930023 | 1144..17 | 5640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:05:08 has no hits.
BS07709.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:35 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RA | 1..1128 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:27 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RA | 826..1962 | 9..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:03 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 81..1202 | 22..1143 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:35 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RA | 826..1962 | 9..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:18 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 81..1202 | 22..1143 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:18 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 928897..930018 | 22..1143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:03 Download gff for
BS07709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 822930..824051 | 22..1143 | 100 | | Minus |
BS07709.pep Sequence
Translation from 16 to 1143
> BS07709.pep
MLPNFEVIAPNCTMIGMADSAEGVTQEDSHTESRADGISGSLRSLGTYTQ
ESTEPALSPADLPARSRKAFLRHMIGQLAEPVQNRIRALRHNQLQQVRIS
EQFFREVYELERRFYGQSCALFDARRDILEGSVEPPIQTEKTWPEDPQDA
LYLDFGNNEELRQLRQKLAPVSPTTLGVPRFWLTVFQNVPLLSELVQDHD
EPLLESLMDVRLAYDQDSYMVIFQFRPNSFLHDSSLLLTKRYFLQHSADP
EYPFLFEGPEIVRCEGCHIHWRDGSNLTLQTVESRRRNRAHRVTKVMPRE
SFFRFFAPPQALDLSLADEKTKLILGNDFEVGFLLRTQIVPKAVLFYTGD
LVDSLSAASPDSRSLSSEAEQEQVL*
BS07709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-PB | 362 | CG3708-PB | 1..362 | 14..375 | 1866 | 100 | Plus |
| Nap1-PC | 370 | CG5330-PC | 30..325 | 59..353 | 602 | 40.9 | Plus |
| Nap1-PB | 370 | CG5330-PB | 30..325 | 59..353 | 602 | 40.9 | Plus |
| Nap1-PA | 370 | CG5330-PA | 30..325 | 59..353 | 602 | 40.9 | Plus |
| mil-PA | 283 | CG5017-PA | 28..274 | 80..372 | 302 | 27.3 | Plus |
