Clone BS07712 Report

Search the DGRC for BS07712

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG30159-RA
Protein status:BS07712.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07712.3prime Sequence

750 bp (749 high quality bases) assembled on 2006-01-06

> BS07712.3prime
ATGGTCTAGAAAGCTTTCAGCGCACTAGCTCCGGCAGCAGCTTCTCCTTG
GGCAACCAGCGCTGCCTCAGTTCGTTGTAGCGGCGCCAGATGTAGGGATA
GCCGGCGGCCCAGGAGAGCCAGGCCTCCTTTTCCGCTGTGGTCTGCTCCA
CCTTCTTCAGATGCTGGTAGTACTTCCCGTTCTTCTTAACCGCGGCGGCG
GCATCCTGCACGAATCGGGCGAAGCGGAGCTTGAGCAGGGTCTCCGAGAC
GTCCAGCAGGCGGTTGCCCCTCGGCGGATGGACCAGGCACAGCTGGCAGA
CAACAAAGTCCTGTCCCTTGGCGGATTTAAGGGGCAGAAAGGTGGCCTCG
CGCCCAATGAGACACTGCTGCAGCCAGGAGTAGCCGTTGGCATTGACGCG
CACGCCCGGCAGTTTGACGGGCAGCAGGCGTTTGCTGCTAGTGAAGATCG
GGAAAAGCGGCCGGTGCTGGATCATCAGCAGGGTGTCCTGCTCCTGCTGC
TTGACCCCGGCGATCTTGCCCGTGTGCATGACGCGCTCGTTGATCAGGCG
CTCCGGGATGTGCGAGGGCTGCTTAAACTGGCGCACCAGGTAGGCCGGCT
TCCGTTTGGCATAGGCCACGGCCAGCATGATGGCCGAGGTGCCATAGATG
GCCAGCTCACTGCCGCGCGTATCCCGCTCCAGGAAGTTACATAAGTCCTG
GTACTTGGCCACCGCAAAATCCTTGGCCGCCTCCATGTCGACTGATAACT

BS07712.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-PB 720 CG30159-RB 1..720 736..17 3600 100 Minus
CG30159-PA 720 CG30159-RA 1..720 736..17 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-RC 1566 CG30159-RC 388..1107 736..17 3600 100 Minus
CG30159-RA 1561 CG30159-RA 383..1102 736..17 3600 100 Minus
CG30159-RB 1322 CG30159-RB 144..863 736..17 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6993128..6993847 736..17 3600 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:07:11 has no hits.

BS07712.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:14 Download gff for BS07712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-PB 1..720 17..736 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:17 Download gff for BS07712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-PA 1..720 17..736 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:47 Download gff for BS07712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 136..872 8..749 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:01 Download gff for BS07712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 136..872 8..749 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:01 Download gff for BS07712.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6993119..6993856 8..750 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:47 Download gff for BS07712.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2880624..2881361 8..750 98   Minus

BS07712.5prime Sequence

750 bp (749 high quality bases) assembled on 2006-01-06

> BS07712.5prime
GAAGTTATCAGTCGACATGGAGGCGGCCAAGGATTTTGCGGTGGCCAAGT
ACCAGGACTTATGTAACTTCCTGGAGCGGGATACGCGCGGCAGTGAGCTG
GCCATCTATGGCACCTCGGCCATCATGCTGGCCGTGGCCTATGCCAAACG
GAAGCCGGCCTACCTGGTGCGCCAGTTTAAGCAGCCCTCGCACATCCCGG
AGCGCCTGATCAACGAGCGCGTCATGCACACGGGCAAGATCGCCGGGGTC
AAGCAGCAGGAGCAGGACACCCTGCTGATGATCCAGCACCGGCCGCTTTT
CCCGATCTTCACTAGCAGCAAACGCCTGCTGCCCGTCAAACTGCCGGGCG
TGCGCGTCAATGCCAACGGCTACTCCTGGCTGCAGCAGTGTCTCATTGGG
CGCGAGGCCACCTTTCTGCCCCTTAAATCCGCCAAGGGACAGGACTTTGT
TGTCTGCCAGCTGTGCCTGGTCCATCCGCCGAGGGGCAACCGCCTGCTGG
ACGTCTCGGAGACCCTGCTCAAGCTCCGCTTCGCCCGATTCGTGCAGGAT
GCCGCCGCCGCGGTTAAGAAGAACGGGAAGTACTACCAGCATCTGAAGAA
GGTGGAGCAGACCACAGCGGAAAAGGAGGCCTGGCTCTCCTGGGCCGCCG
GCTATCCCTACATCTGGCGCCGCTACAACGAACTGAGGCAGCGCTGGTTG
CCCAAGGAGAAGCTGCTGCCGGAGCTAGTGCGCTGAAAGCTTTCTAGACC

BS07712.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-PB 720 CG30159-RB 1..720 17..736 3600 100 Plus
CG30159-PA 720 CG30159-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-RC 1566 CG30159-RC 388..1107 17..736 3600 100 Plus
CG30159-RA 1561 CG30159-RA 383..1102 17..736 3600 100 Plus
CG30159-RB 1322 CG30159-RB 144..863 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6993128..6993847 17..736 3600 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:17:55 has no hits.

BS07712.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:15 Download gff for BS07712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-PB 1..720 17..736 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:18 Download gff for BS07712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:35 Download gff for BS07712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 136..872 4..745 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:26 Download gff for BS07712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 136..872 4..745 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:26 Download gff for BS07712.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6993119..6993856 3..745 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:35 Download gff for BS07712.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2880624..2881361 3..745 98   Plus

BS07712.complete Sequence

752 bp (752 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635959

> BS07712.complete
GAAGTTATCAGTCGACATGGAGGCGGCCAAGGATTTTGCGGTGGCCAAGT
ACCAGGACTTATGTAACTTCCTGGAGCGGGATACGCGCGGCAGTGAGCTG
GCCATCTATGGCACCTCGGCCATCATGCTGGCCGTGGCCTATGCCAAACG
GAAGCCGGCCTACCTGGTGCGCCAGTTTAAGCAGCCCTCGCACATCCCGG
AGCGCCTGATCAACGAGCGCGTCATGCACACGGGCAAGATCGCCGGGGTC
AAGCAGCAGGAGCAGGACACCCTGCTGATGATCCAGCACCGGCCGCTTTT
CCCGATCTTCACTAGCAGCAAACGCCTGCTGCCCGTCAAACTGCCGGGCG
TGCGCGTCAATGCCAACGGCTACTCCTGGCTGCAGCAGTGTCTCATTGGG
CGCGAGGCCACCTTTCTGCCCCTTAAATCCGCCAAGGGACAGGACTTTGT
TGTCTGCCAGCTGTGCCTGGTCCATCCGCCGAGGGGCAACCGCCTGCTGG
ACGTCTCGGAGACCCTGCTCAAGCTCCGCTTCGCCCGATTCGTGCAGGAT
GCCGCCGCCGCGGTTAAGAAGAACGGGAAGTACTACCAGCATCTGAAGAA
GGTGGAGCAGACCACAGCGGAAAAGGAGGCCTGGCTCTCCTGGGCCGCCG
GCTATCCCTACATCTGGCGCCGCTACAACGAACTGAGGCAGCGCTGGTTG
CCCAAGGAGAAGCTGCTGCCGGAGCTAGTGCGCTGAAAGCTTTCTAGACC
AT

BS07712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-RC 720 CG30159-PC 1..720 17..736 3600 100 Plus
CG30159-RA 720 CG30159-PA 1..720 17..736 3600 100 Plus
CG30159-RB 720 CG30159-PB 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-RC 1566 CG30159-RC 388..1107 17..736 3600 100 Plus
CG30159-RA 1561 CG30159-RA 383..1102 17..736 3600 100 Plus
CG30159-RB 1322 CG30159-RB 144..863 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6993128..6993847 17..736 3600 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:15:55 has no hits.

BS07712.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:20 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:34 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 370..1106 4..745 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:23 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 144..862 17..735 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:20 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RA 370..1106 4..745 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:00 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
CG30159-RB 144..862 17..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:00 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6993128..6993846 17..735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:23 Download gff for BS07712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2880633..2881351 17..735 100   Plus

BS07712.pep Sequence

Translation from 16 to 735

> BS07712.pep
MEAAKDFAVAKYQDLCNFLERDTRGSELAIYGTSAIMLAVAYAKRKPAYL
VRQFKQPSHIPERLINERVMHTGKIAGVKQQEQDTLLMIQHRPLFPIFTS
SKRLLPVKLPGVRVNANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLC
LVHPPRGNRLLDVSETLLKLRFARFVQDAAAAVKKNGKYYQHLKKVEQTT
AEKEAWLSWAAGYPYIWRRYNELRQRWLPKEKLLPELVR*

BS07712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30159-PC 239 CG30159-PC 1..239 1..239 1249 100 Plus
CG30159-PA 239 CG30159-PA 1..239 1..239 1249 100 Plus
CG30159-PB 239 CG30159-PB 1..239 1..239 1249 100 Plus