Clone Sequence Records
BS07715.3prime Sequence
947 bp (806 high quality bases) assembled on 2006-01-06
> BS07715.3prime
ATGGTCTAGAAAGCTTTTAAAAGGGAGTCTTTTCGCGATGAAGCGAATTT
CTTGATCCACTAACGGACCTCGATGGCAAATGGATGGTCTTCATGTGCCG
GCAGGTGGGACAAACCACGTTCAACGTGTCCTTAACCATTTGTGGCGGTG
TGTAGAAGAATGCAATTATGTCCACGCTATCCTCGGCGAAAACCAGATCC
AGCAGACTCCGCACGCGCAACCAATCCAAACGGTCGATGCCGCATCCAAG
TCTGGGAATGGCCAACTTGGTCACTCCGTGCTCCCTCATATGTTCCCGCA
TGGCCAGCAATGCGTAGTAGAGAGCTGCGTAAGTGCACTTTTCGTGGCTG
CGCTCCTTGGTCACCAGGTTGTAGATATGTCTACCATCCTGCTCCAGAAC
TGCCACATTTCCGGTATGCTTGTGTTGGCGCTTCAGCTCATCCACTTGTC
CGAATTTGCAGCGGAACTGCAGATTTATGCCCGCACACATAGCGAAGTCC
GCACTGACAGAGTGCACTAAGGCGTAGTTTTCCGGGGCGCTGAACAGGTT
CCCCCTGGCCTCCGTAATCTGACACTTGGGAGCAGCCAGCTCCTTGGACA
TGTCTTCGTGCTCACAGATGAGTATCTCGATGGGATACTCGCTCTGGGAG
AAGGTCTGCTGCACCAGACGCTTCACGTGCTTCCATTCAAGTCCATCGTT
GCCGCAGCAGATTCGGGGCATAGCCACTTTGGTGATCTCATGGTTGCGCA
TATGCTCCCGCATGCAGATCAAAGCTGCCTGGACATCGCCGTAAGTGCTG
GCCTCGTAGAGACTCGACTTGGTCACCAGATAGTATATGAATCGGGCATT
GTGCTCCAGAACGGCACAGTTGCCTCTGGAAACACTTCTTTGCCGTAGTT
CATCCACATCCCCGTAGATCAGGGCAAACTGCCAGGCGAGAGTCCCC
BS07715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-PA | 1032 | CG33056-RA | 106..1032 | 943..17 | 4635 | 100 | Minus |
CG33056-PB | 1032 | CG33056-RB | 106..1032 | 943..17 | 4635 | 100 | Minus |
CG33056-PD | 1032 | CG33056-RD | 106..1032 | 943..17 | 4635 | 100 | Minus |
CG33056-PE | 1032 | CG33056-RE | 106..1032 | 943..17 | 4635 | 100 | Minus |
CG33056-PC | 963 | CG33056-RC | 300..963 | 680..17 | 3320 | 100 | Minus |
CG33056-PC | 963 | CG33056-RC | 106..301 | 943..748 | 980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-RE | 1448 | CG33056-RE | 320..1250 | 947..17 | 4640 | 99.9 | Minus |
CG33056-RD | 1558 | CG33056-RD | 430..1360 | 947..17 | 4640 | 99.9 | Minus |
CG33056-RB | 1519 | CG33056-RB | 391..1321 | 947..17 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21198881..21199185 | 287..591 | 1525 | 100 | Plus |
3L | 28110227 | 3L | 21198459..21198729 | 17..287 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 21199995..21200193 | 749..947 | 980 | 99.5 | Plus |
3L | 28110227 | 3L | 21199246..21199405 | 590..749 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:22:31 has no hits.
BS07715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:21 Download gff for
BS07715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-PD | 101..1032 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:26 Download gff for
BS07715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-PE | 101..1032 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:22 Download gff for
BS07715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RB | 390..1321 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:31 Download gff for
BS07715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RB | 390..1321 | 17..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:31 Download gff for
BS07715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21198881..21199183 | 287..589 | 100 | <- | Plus |
3L | 21199246..21199404 | 590..748 | 100 | <- | Plus |
3L | 21199995..21200193 | 749..947 | 99 | | Plus |
3L | 21198459..21198728 | 17..286 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:22 Download gff for
BS07715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21191559..21191828 | 17..286 | 100 | <- | Plus |
arm_3L | 21191981..21192283 | 287..589 | 100 | <- | Plus |
arm_3L | 21192346..21192504 | 590..748 | 100 | <- | Plus |
arm_3L | 21193095..21193293 | 749..947 | 99 | | Plus |
BS07715.5prime Sequence
952 bp (759 high quality bases) assembled on 2006-01-06
> BS07715.5prime
GAAGTTATCAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGG
ACATATTCCACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCA
TCCTTTACGGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTA
CGGGGATGTGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTG
CCGTTCTGGAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCG
AGTCTCTACGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTG
CATGCGGGAGCATATGCGCAACCATGAGATCACCAAAGTGGCTATGCCCC
GAATCTGCTGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTG
GTGCAGCAGACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTG
TGAGCACGAAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTA
CGGAGGCCAGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTG
CACTCTGTCAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTT
CCGCTGCAAATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATA
CCGGAAATGTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTG
GTGACCAAGGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTA
CGCATTGCTGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGT
TGGCCATTCCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGC
GTGCGGAGTCTGCTGGATCTGGTTTTCGCCGAGGATAGCGTGGACATAAT
TGCATTCTTCTACACACCGCCACAAATGGTTAAGGACACGTTGAACGTGG
TT
BS07715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-PA | 1032 | CG33056-RA | 1..936 | 17..952 | 4680 | 100 | Plus |
CG33056-PB | 1032 | CG33056-RB | 1..936 | 17..952 | 4680 | 100 | Plus |
CG33056-PD | 1032 | CG33056-RD | 1..936 | 17..952 | 4680 | 100 | Plus |
CG33056-PE | 1032 | CG33056-RE | 1..936 | 17..952 | 4680 | 100 | Plus |
CG33056-PC | 963 | CG33056-RC | 300..867 | 385..952 | 2840 | 100 | Plus |
CG33056-PC | 963 | CG33056-RC | 1..301 | 17..317 | 1505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-RE | 1448 | CG33056-RE | 218..1154 | 16..952 | 4685 | 100 | Plus |
CG33056-RD | 1558 | CG33056-RD | 328..1264 | 16..952 | 4685 | 100 | Plus |
CG33056-RB | 1519 | CG33056-RB | 289..1225 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21198881..21199185 | 778..474 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 21199995..21200295 | 316..16 | 1505 | 100 | Minus |
3L | 28110227 | 3L | 21198555..21198729 | 952..778 | 875 | 100 | Minus |
3L | 28110227 | 3L | 21199246..21199405 | 475..316 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:44:44 has no hits.
BS07715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:22 Download gff for
BS07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-PD | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:27 Download gff for
BS07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-PE | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:58 Download gff for
BS07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RB | 282..1225 | 10..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:40 Download gff for
BS07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RB | 282..1225 | 10..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:40 Download gff for
BS07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21198555..21198728 | 779..952 | 100 | <- | Minus |
3L | 21198881..21199183 | 476..778 | 100 | <- | Minus |
3L | 21199246..21199404 | 317..475 | 100 | <- | Minus |
3L | 21199995..21200302 | 10..316 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:58 Download gff for
BS07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21192346..21192504 | 317..475 | 100 | <- | Minus |
arm_3L | 21191655..21191828 | 779..952 | 100 | <- | Minus |
arm_3L | 21191981..21192283 | 476..778 | 100 | <- | Minus |
arm_3L | 21193095..21193402 | 10..316 | 99 | | Minus |
BS07715.complete Sequence
1064 bp (1064 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635960
> BS07715.complete
GAAGTTATCAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGG
ACATATTCCACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCA
TCCTTTACGGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTA
CGGGGATGTGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTG
CCGTTCTGGAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCG
AGTCTCTACGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTG
CATGCGGGAGCATATGCGCAACCATGAGATCACCAAAGTGGCTATGCCCC
GAATCTGCTGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTG
GTGCAGCAGACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTG
TGAGCACGAAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTA
CGGAGGCCAGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTG
CACTCTGTCAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTT
CCGCTGCAAATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATA
CCGGAAATGTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTG
GTGACCAAGGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTA
CGCATTGCTGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGT
TGGCCATTCCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGC
GTGCGGAGTCTGCTGGATCTGGTTTTCGCCGAGGATAGCGTGGACATAAT
TGCATTCTTCTACACACCGCCACAAATGGTTAAGGACACGTTGAACGTGG
TTTGTCCCACCTGCCGGCACATGAAGACCATCCATTTGCCATCGAGGTCC
GTTAGTGGATCAAGAAATTCGCTTCATCGCGAAAAGACTCCCTTTTAAAA
GCTTTCTAGACCAT
BS07715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-RE | 1032 | CG33056-PE | 1..1032 | 17..1048 | 5160 | 100 | Plus |
CG33056-RD | 1032 | CG33056-PD | 1..1032 | 17..1048 | 5160 | 100 | Plus |
CG33056-RB | 1032 | CG33056-PB | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-RE | 1448 | CG33056-RE | 218..1250 | 16..1048 | 5165 | 100 | Plus |
CG33056-RD | 1558 | CG33056-RD | 328..1360 | 16..1048 | 5165 | 100 | Plus |
CG33056-RB | 1519 | CG33056-RB | 289..1321 | 16..1048 | 5165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21198881..21199185 | 778..474 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 21199995..21200295 | 316..16 | 1505 | 100 | Minus |
3L | 28110227 | 3L | 21198459..21198729 | 1048..778 | 1355 | 100 | Minus |
3L | 28110227 | 3L | 21199246..21199405 | 475..316 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:24:38 has no hits.
BS07715.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:36 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RD | 1..1032 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:37 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RD | 316..1355 | 10..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:16 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RB | 290..1319 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:37 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RD | 316..1355 | 10..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:25 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33056-RB | 290..1319 | 17..1046 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:25 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21198461..21198728 | 779..1046 | 100 | <- | Minus |
3L | 21198881..21199183 | 476..778 | 100 | <- | Minus |
3L | 21199246..21199404 | 317..475 | 100 | <- | Minus |
3L | 21199995..21200294 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:16 Download gff for
BS07715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21192346..21192504 | 317..475 | 100 | <- | Minus |
arm_3L | 21191561..21191828 | 779..1046 | 100 | <- | Minus |
arm_3L | 21191981..21192283 | 476..778 | 100 | <- | Minus |
arm_3L | 21193095..21193394 | 17..316 | 100 | | Minus |
BS07715.pep Sequence
Translation from 16 to 1047
> BS07715.pep
MANVKIVESKLDIFHAPQTHSLAHAVESSFTAERGTLAWQFALIYGDVDE
LRQRSVSRGNCAVLEHNARFIYYLVTKSSLYEASTYGDVQAALICMREHM
RNHEITKVAMPRICCGNDGLEWKHVKRLVQQTFSQSEYPIEILICEHEDM
SKELAAPKCQITEARGNLFSAPENYALVHSVSADFAMCAGINLQFRCKFG
QVDELKRQHKHTGNVAVLEQDGRHIYNLVTKERSHEKCTYAALYYALLAM
REHMREHGVTKLAIPRLGCGIDRLDWLRVRSLLDLVFAEDSVDIIAFFYT
PPQMVKDTLNVVCPTCRHMKTIHLPSRSVSGSRNSLHREKTPF*
BS07715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33056-PE | 343 | CG33056-PE | 1..343 | 1..343 | 1809 | 100 | Plus |
CG33056-PD | 343 | CG33056-PD | 1..343 | 1..343 | 1809 | 100 | Plus |
CG33056-PB | 343 | CG33056-PB | 1..343 | 1..343 | 1809 | 100 | Plus |
CG33056-PA | 343 | CG33056-PA | 1..343 | 1..343 | 1809 | 100 | Plus |
CG33056-PC | 320 | CG33056-PC | 1..320 | 1..343 | 1641 | 93.3 | Plus |