Clone BS07715 Report

Search the DGRC for BS07715

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG33056-RA
Protein status:BS07715.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07715.3prime Sequence

947 bp (806 high quality bases) assembled on 2006-01-06

> BS07715.3prime
ATGGTCTAGAAAGCTTTTAAAAGGGAGTCTTTTCGCGATGAAGCGAATTT
CTTGATCCACTAACGGACCTCGATGGCAAATGGATGGTCTTCATGTGCCG
GCAGGTGGGACAAACCACGTTCAACGTGTCCTTAACCATTTGTGGCGGTG
TGTAGAAGAATGCAATTATGTCCACGCTATCCTCGGCGAAAACCAGATCC
AGCAGACTCCGCACGCGCAACCAATCCAAACGGTCGATGCCGCATCCAAG
TCTGGGAATGGCCAACTTGGTCACTCCGTGCTCCCTCATATGTTCCCGCA
TGGCCAGCAATGCGTAGTAGAGAGCTGCGTAAGTGCACTTTTCGTGGCTG
CGCTCCTTGGTCACCAGGTTGTAGATATGTCTACCATCCTGCTCCAGAAC
TGCCACATTTCCGGTATGCTTGTGTTGGCGCTTCAGCTCATCCACTTGTC
CGAATTTGCAGCGGAACTGCAGATTTATGCCCGCACACATAGCGAAGTCC
GCACTGACAGAGTGCACTAAGGCGTAGTTTTCCGGGGCGCTGAACAGGTT
CCCCCTGGCCTCCGTAATCTGACACTTGGGAGCAGCCAGCTCCTTGGACA
TGTCTTCGTGCTCACAGATGAGTATCTCGATGGGATACTCGCTCTGGGAG
AAGGTCTGCTGCACCAGACGCTTCACGTGCTTCCATTCAAGTCCATCGTT
GCCGCAGCAGATTCGGGGCATAGCCACTTTGGTGATCTCATGGTTGCGCA
TATGCTCCCGCATGCAGATCAAAGCTGCCTGGACATCGCCGTAAGTGCTG
GCCTCGTAGAGACTCGACTTGGTCACCAGATAGTATATGAATCGGGCATT
GTGCTCCAGAACGGCACAGTTGCCTCTGGAAACACTTCTTTGCCGTAGTT
CATCCACATCCCCGTAGATCAGGGCAAACTGCCAGGCGAGAGTCCCC

BS07715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-PA 1032 CG33056-RA 106..1032 943..17 4635 100 Minus
CG33056-PB 1032 CG33056-RB 106..1032 943..17 4635 100 Minus
CG33056-PD 1032 CG33056-RD 106..1032 943..17 4635 100 Minus
CG33056-PE 1032 CG33056-RE 106..1032 943..17 4635 100 Minus
CG33056-PC 963 CG33056-RC 300..963 680..17 3320 100 Minus
CG33056-PC 963 CG33056-RC 106..301 943..748 980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-RE 1448 CG33056-RE 320..1250 947..17 4640 99.9 Minus
CG33056-RD 1558 CG33056-RD 430..1360 947..17 4640 99.9 Minus
CG33056-RB 1519 CG33056-RB 391..1321 947..17 4640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21198881..21199185 287..591 1525 100 Plus
3L 28110227 3L 21198459..21198729 17..287 1355 100 Plus
3L 28110227 3L 21199995..21200193 749..947 980 99.5 Plus
3L 28110227 3L 21199246..21199405 590..749 800 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:22:31 has no hits.

BS07715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:21 Download gff for BS07715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-PD 101..1032 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:26 Download gff for BS07715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-PE 101..1032 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:22 Download gff for BS07715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-RB 390..1321 17..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:31 Download gff for BS07715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-RB 390..1321 17..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:31 Download gff for BS07715.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21198881..21199183 287..589 100 <- Plus
3L 21199246..21199404 590..748 100 <- Plus
3L 21199995..21200193 749..947 99   Plus
3L 21198459..21198728 17..286 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:22 Download gff for BS07715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21191559..21191828 17..286 100 <- Plus
arm_3L 21191981..21192283 287..589 100 <- Plus
arm_3L 21192346..21192504 590..748 100 <- Plus
arm_3L 21193095..21193293 749..947 99   Plus

BS07715.5prime Sequence

952 bp (759 high quality bases) assembled on 2006-01-06

> BS07715.5prime
GAAGTTATCAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGG
ACATATTCCACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCA
TCCTTTACGGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTA
CGGGGATGTGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTG
CCGTTCTGGAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCG
AGTCTCTACGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTG
CATGCGGGAGCATATGCGCAACCATGAGATCACCAAAGTGGCTATGCCCC
GAATCTGCTGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTG
GTGCAGCAGACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTG
TGAGCACGAAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTA
CGGAGGCCAGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTG
CACTCTGTCAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTT
CCGCTGCAAATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATA
CCGGAAATGTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTG
GTGACCAAGGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTA
CGCATTGCTGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGT
TGGCCATTCCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGC
GTGCGGAGTCTGCTGGATCTGGTTTTCGCCGAGGATAGCGTGGACATAAT
TGCATTCTTCTACACACCGCCACAAATGGTTAAGGACACGTTGAACGTGG
TT

BS07715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-PA 1032 CG33056-RA 1..936 17..952 4680 100 Plus
CG33056-PB 1032 CG33056-RB 1..936 17..952 4680 100 Plus
CG33056-PD 1032 CG33056-RD 1..936 17..952 4680 100 Plus
CG33056-PE 1032 CG33056-RE 1..936 17..952 4680 100 Plus
CG33056-PC 963 CG33056-RC 300..867 385..952 2840 100 Plus
CG33056-PC 963 CG33056-RC 1..301 17..317 1505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-RE 1448 CG33056-RE 218..1154 16..952 4685 100 Plus
CG33056-RD 1558 CG33056-RD 328..1264 16..952 4685 100 Plus
CG33056-RB 1519 CG33056-RB 289..1225 16..952 4685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21198881..21199185 778..474 1525 100 Minus
3L 28110227 3L 21199995..21200295 316..16 1505 100 Minus
3L 28110227 3L 21198555..21198729 952..778 875 100 Minus
3L 28110227 3L 21199246..21199405 475..316 800 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:44:44 has no hits.

BS07715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:22 Download gff for BS07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-PD 1..936 17..952 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:27 Download gff for BS07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-PE 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:58 Download gff for BS07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-RB 282..1225 10..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:40 Download gff for BS07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-RB 282..1225 10..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:40 Download gff for BS07715.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21198555..21198728 779..952 100 <- Minus
3L 21198881..21199183 476..778 100 <- Minus
3L 21199246..21199404 317..475 100 <- Minus
3L 21199995..21200302 10..316 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:58 Download gff for BS07715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21192346..21192504 317..475 100 <- Minus
arm_3L 21191655..21191828 779..952 100 <- Minus
arm_3L 21191981..21192283 476..778 100 <- Minus
arm_3L 21193095..21193402 10..316 99   Minus

BS07715.complete Sequence

1064 bp (1064 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635960

> BS07715.complete
GAAGTTATCAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGG
ACATATTCCACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCA
TCCTTTACGGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTA
CGGGGATGTGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTG
CCGTTCTGGAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCG
AGTCTCTACGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTG
CATGCGGGAGCATATGCGCAACCATGAGATCACCAAAGTGGCTATGCCCC
GAATCTGCTGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTG
GTGCAGCAGACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTG
TGAGCACGAAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTA
CGGAGGCCAGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTG
CACTCTGTCAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTT
CCGCTGCAAATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATA
CCGGAAATGTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTG
GTGACCAAGGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTA
CGCATTGCTGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGT
TGGCCATTCCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGC
GTGCGGAGTCTGCTGGATCTGGTTTTCGCCGAGGATAGCGTGGACATAAT
TGCATTCTTCTACACACCGCCACAAATGGTTAAGGACACGTTGAACGTGG
TTTGTCCCACCTGCCGGCACATGAAGACCATCCATTTGCCATCGAGGTCC
GTTAGTGGATCAAGAAATTCGCTTCATCGCGAAAAGACTCCCTTTTAAAA
GCTTTCTAGACCAT

BS07715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-RE 1032 CG33056-PE 1..1032 17..1048 5160 100 Plus
CG33056-RD 1032 CG33056-PD 1..1032 17..1048 5160 100 Plus
CG33056-RB 1032 CG33056-PB 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-RE 1448 CG33056-RE 218..1250 16..1048 5165 100 Plus
CG33056-RD 1558 CG33056-RD 328..1360 16..1048 5165 100 Plus
CG33056-RB 1519 CG33056-RB 289..1321 16..1048 5165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21198881..21199185 778..474 1525 100 Minus
3L 28110227 3L 21199995..21200295 316..16 1505 100 Minus
3L 28110227 3L 21198459..21198729 1048..778 1355 100 Minus
3L 28110227 3L 21199246..21199405 475..316 800 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:24:38 has no hits.

BS07715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:36 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
CG33056-RD 1..1032 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:37 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
CG33056-RD 316..1355 10..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:16 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
CG33056-RB 290..1319 17..1046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:37 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
CG33056-RD 316..1355 10..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:25 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
CG33056-RB 290..1319 17..1046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:25 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21198461..21198728 779..1046 100 <- Minus
3L 21198881..21199183 476..778 100 <- Minus
3L 21199246..21199404 317..475 100 <- Minus
3L 21199995..21200294 17..316 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:16 Download gff for BS07715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21192346..21192504 317..475 100 <- Minus
arm_3L 21191561..21191828 779..1046 100 <- Minus
arm_3L 21191981..21192283 476..778 100 <- Minus
arm_3L 21193095..21193394 17..316 100   Minus

BS07715.pep Sequence

Translation from 16 to 1047

> BS07715.pep
MANVKIVESKLDIFHAPQTHSLAHAVESSFTAERGTLAWQFALIYGDVDE
LRQRSVSRGNCAVLEHNARFIYYLVTKSSLYEASTYGDVQAALICMREHM
RNHEITKVAMPRICCGNDGLEWKHVKRLVQQTFSQSEYPIEILICEHEDM
SKELAAPKCQITEARGNLFSAPENYALVHSVSADFAMCAGINLQFRCKFG
QVDELKRQHKHTGNVAVLEQDGRHIYNLVTKERSHEKCTYAALYYALLAM
REHMREHGVTKLAIPRLGCGIDRLDWLRVRSLLDLVFAEDSVDIIAFFYT
PPQMVKDTLNVVCPTCRHMKTIHLPSRSVSGSRNSLHREKTPF*

BS07715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-PE 343 CG33056-PE 1..343 1..343 1809 100 Plus
CG33056-PD 343 CG33056-PD 1..343 1..343 1809 100 Plus
CG33056-PB 343 CG33056-PB 1..343 1..343 1809 100 Plus
CG33056-PA 343 CG33056-PA 1..343 1..343 1809 100 Plus
CG33056-PC 320 CG33056-PC 1..320 1..343 1641 93.3 Plus