Clone BS07717 Report

Search the DGRC for BS07717

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG12333-RA
Protein status:BS07717.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07717.3prime Sequence

934 bp (868 high quality bases) assembled on 2006-01-06

> BS07717.3prime
ATGGTCTAGAAAGCTTTCAATTGTCCTTCGGAAGAACGATGGACCAGCCG
AAAACGCGGCGATCGAAGCCGCAGGAGAAGAGATCGCAGTCCAGCAGCGG
CTCCTCCGCCCACGCTACAGACGACACCATCCGTCGGTGGCCCTGCCGAC
TGGTCCGTGGCAATCGGGCGACTCTCTGCCCGTTCAAATCGAACAGTCGG
ATCTGTCGATTGTCATGCGGTATGGCGATAATTCCACCAGTGGAGACCGC
CAAACGATTGACCGAGGAATCCGTTCGAATGGTGGCCAAGGCGGATCGCA
TGTTGCGCAGCTCCCAGACCTTGATTGTACGATCATCTGATCCGGACACC
ACCTTGTCGTCGCGTGCGAACACACTGGACGTAACCGTTTCCGTGTGCCC
TTGGAAGACGGAGACCGCTGGGATTGCCTCTCGGAAGTCCCATAGACGGA
ACGTAGTGTCCCTGGAAGCGGTGACCACCAGGCGCTGGGTGGGATGTGCC
GACACGTGGGTGAGCTCGTGGTCGTGCCCAGTGAGCGGCTGCAGTGGCAG
GCCAGTCTCCACGTCCCACAGGATGGCAGTCCGATCCCAGCTGCCCGTGA
TGATTTGATCCATCGAAGAGAGCCAATCGGCGGCCACCACGACTGAAAGA
TGACCGCCGGGGCCTGTGAACTCGCAGAGCGGAGTGCGTAAGGTGTCCAC
ACGATCGCGATCTTCCACCTGCTCATCACTGTCGTCCAGTTCCTCCTCTG
AAGAATGGCCCTTCTTGGGCACTTCCCAGTTGACGGCCGCCTGCCAGATG
TGGGCAGTACCATCCCCGCTGCCGGTGAGCACAAGATCTCGCTGCTGATG
GAACTTGATGGAGTTTACGGAGCCGGCGTGCCCTTGGTACTGCAAAAGGC
ACCTGCCGCTCTCCACGCCCCAGATGCAGGCCGT

BS07717.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-PA 1464 CG12333-RA 547..1464 934..17 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 2167 CG12333-RA 796..1714 934..16 4580 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18400826..18401574 16..764 3745 100 Plus
3R 32079331 3R 18401631..18401801 764..934 840 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 03:49:49 has no hits.

BS07717.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:25 Download gff for BS07717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 547..1464 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:31 Download gff for BS07717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 547..1464 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:27 Download gff for BS07717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 796..1721 8..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:24 Download gff for BS07717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 796..1721 8..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:24 Download gff for BS07717.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18401632..18401801 765..934 99   Plus
3R 18400819..18401574 8..764 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:27 Download gff for BS07717.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14226541..14227296 8..764 99 <- Plus
arm_3R 14227354..14227523 765..934 99   Plus

BS07717.5prime Sequence

868 bp (835 high quality bases) assembled on 2006-01-06

> BS07717.5prime
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCCGCGGTCATCTT
TCAGTCGTGGTGGCCGCC

BS07717.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-PA 1464 CG12333-RA 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 2167 CG12333-RA 249..1101 16..868 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18401631..18402193 733..171 2815 100 Minus
3R 32079331 3R 18402314..18402468 170..16 775 100 Minus
3R 32079331 3R 18401439..18401574 868..733 665 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 20:03:32 has no hits.

BS07717.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:26 Download gff for BS07717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:32 Download gff for BS07717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:01 Download gff for BS07717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 249..1101 16..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:28 Download gff for BS07717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 249..1101 16..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:28 Download gff for BS07717.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18401439..18401574 733..868 99 <- Minus
3R 18401632..18402193 171..732 100 <- Minus
3R 18402314..18402468 16..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:01 Download gff for BS07717.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14227161..14227296 733..868 99 <- Minus
arm_3R 14227354..14227915 171..732 100 <- Minus
arm_3R 14228036..14228190 16..170 100   Minus

BS07717.complete Sequence

1496 bp (1496 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635961

> BS07717.complete
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTT
TCAGTCGTGGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCAC
GGGCAGCTGGGATCGGACTGCCATCCTGTGGGACGTGGAGACTGGCCTGC
CACTGCAGCCGCTCACTGGGCACGACCACGAGCTCACCCACGTGTCGGCA
CATCCCACCCAGCGCCTGGTGGTCACCGCTTCCAGGGACACTACGTTCCG
TCTATGGGACTTCCGAGAGGCAATCCCAGCGGTCTCCGTCTTCCAAGGGC
ACACGGAAACGGTTACGTCCAGTGTGTTCGCACGCGACGACAAGGTGGTG
TCCGGATCAGATGATCGTACAATCAAGGTCTGGGAGCTGCGCAACATGCG
ATCCGCCTTGGCCACCATTCGAACGGATTCCTCGGTCAATCGTTTGGCGG
TCTCCACTGGTGGAATTATCGCCATACCGCATGACAATCGACAGATCCGA
CTGTTCGATTTGAACGGGCAGAGAGTCGCCCGATTGCCACGGACCAGTCG
GCAGGGCCACCGACGGATGGTGTCGTCTGTAGCGTGGGCGGAGGAGCCGC
TGCTGGACTGCGATCTCTTCTCCTGCGGCTTCGATCGCCGCGTTTTCGGC
TGGTCCATCGTTCTTCCGAAGGACAATTGAAAGCTTTCTAGACCAT

BS07717.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 1464 CG12333-PA 1..1464 17..1480 7320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 2167 CG12333-RA 249..1714 16..1481 7330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18400826..18401574 1481..733 3745 100 Minus
3R 32079331 3R 18401631..18402193 733..171 2815 100 Minus
3R 32079331 3R 18402314..18402468 170..16 775 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:06:43 has no hits.

BS07717.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:12 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 1..1464 17..1480 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:08 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 246..1718 16..1489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:06 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 250..1712 17..1479 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:12 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 246..1718 16..1489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:32 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 250..1712 17..1479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:32 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18400828..18401574 733..1479 100 <- Minus
3R 18401632..18402193 171..732 100 <- Minus
3R 18402314..18402467 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:06 Download gff for BS07717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14226550..14227296 733..1479 100 <- Minus
arm_3R 14227354..14227915 171..732 100 <- Minus
arm_3R 14228036..14228189 17..170 100   Minus

BS07717.pep Sequence

Translation from 16 to 1479

> BS07717.pep
MKASKTRAVRLTSLTEDVAAVPEDAPFRARLHVLFAQIEREFEQLYLENQ
ALQEKLDIATTTKESLIPPDARSAAGGSMSTQASSAALATPATQTDEVAG
SFLAAASSTHKSLKAKLSSATGGSKAKASNKIKAQTSRIVSSFKAPTVVS
TVVREFGGHKDGIWQVAAKAGQPIIGTASADHTACIWGVESARCLLQYQG
HAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPKKGHSSEEELDD
SDEQVEDRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDR
TAILWDVETGLPLQPLTGHDHELTHVSAHPTQRLVVTASRDTTFRLWDFR
EAIPAVSVFQGHTETVTSSVFARDDKVVSGSDDRTIKVWELRNMRSALAT
IRTDSSVNRLAVSTGGIIAIPHDNRQIRLFDLNGQRVARLPRTSRQGHRR
MVSSVAWAEEPLLDCDLFSCGFDRRVFGWSIVLPKDN*

BS07717.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-PA 487 CG12333-PA 1..487 1..487 2497 100 Plus
Lis-1-PG 411 CG8440-PG 144..411 154..392 254 29.4 Plus
Lis-1-PF 411 CG8440-PF 144..411 154..392 254 29.4 Plus
Lis-1-PB 411 CG8440-PB 144..411 154..392 254 29.4 Plus
Lis-1-PA 411 CG8440-PA 144..411 154..392 254 29.4 Plus
Lis-1-PG 411 CG8440-PG 106..372 158..436 200 23.3 Plus
Lis-1-PF 411 CG8440-PF 106..372 158..436 200 23.3 Plus
Lis-1-PB 411 CG8440-PB 106..372 158..436 200 23.3 Plus
Lis-1-PG 411 CG8440-PG 12..303 190..475 197 24.5 Plus
Lis-1-PF 411 CG8440-PF 12..303 190..475 197 24.5 Plus
Lis-1-PB 411 CG8440-PB 12..303 190..475 197 24.5 Plus