Clone Sequence Records
BS07717.3prime Sequence
934 bp (868 high quality bases) assembled on 2006-01-06
> BS07717.3prime
ATGGTCTAGAAAGCTTTCAATTGTCCTTCGGAAGAACGATGGACCAGCCG
AAAACGCGGCGATCGAAGCCGCAGGAGAAGAGATCGCAGTCCAGCAGCGG
CTCCTCCGCCCACGCTACAGACGACACCATCCGTCGGTGGCCCTGCCGAC
TGGTCCGTGGCAATCGGGCGACTCTCTGCCCGTTCAAATCGAACAGTCGG
ATCTGTCGATTGTCATGCGGTATGGCGATAATTCCACCAGTGGAGACCGC
CAAACGATTGACCGAGGAATCCGTTCGAATGGTGGCCAAGGCGGATCGCA
TGTTGCGCAGCTCCCAGACCTTGATTGTACGATCATCTGATCCGGACACC
ACCTTGTCGTCGCGTGCGAACACACTGGACGTAACCGTTTCCGTGTGCCC
TTGGAAGACGGAGACCGCTGGGATTGCCTCTCGGAAGTCCCATAGACGGA
ACGTAGTGTCCCTGGAAGCGGTGACCACCAGGCGCTGGGTGGGATGTGCC
GACACGTGGGTGAGCTCGTGGTCGTGCCCAGTGAGCGGCTGCAGTGGCAG
GCCAGTCTCCACGTCCCACAGGATGGCAGTCCGATCCCAGCTGCCCGTGA
TGATTTGATCCATCGAAGAGAGCCAATCGGCGGCCACCACGACTGAAAGA
TGACCGCCGGGGCCTGTGAACTCGCAGAGCGGAGTGCGTAAGGTGTCCAC
ACGATCGCGATCTTCCACCTGCTCATCACTGTCGTCCAGTTCCTCCTCTG
AAGAATGGCCCTTCTTGGGCACTTCCCAGTTGACGGCCGCCTGCCAGATG
TGGGCAGTACCATCCCCGCTGCCGGTGAGCACAAGATCTCGCTGCTGATG
GAACTTGATGGAGTTTACGGAGCCGGCGTGCCCTTGGTACTGCAAAAGGC
ACCTGCCGCTCTCCACGCCCCAGATGCAGGCCGT
BS07717.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-PA | 1464 | CG12333-RA | 547..1464 | 934..17 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 2167 | CG12333-RA | 796..1714 | 934..16 | 4580 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18400826..18401574 | 16..764 | 3745 | 100 | Plus |
3R | 32079331 | 3R | 18401631..18401801 | 764..934 | 840 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:49 has no hits.
BS07717.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:25 Download gff for
BS07717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 547..1464 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:31 Download gff for
BS07717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 547..1464 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:27 Download gff for
BS07717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 796..1721 | 8..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:24 Download gff for
BS07717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 796..1721 | 8..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:24 Download gff for
BS07717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18401632..18401801 | 765..934 | 99 | | Plus |
3R | 18400819..18401574 | 8..764 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:27 Download gff for
BS07717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14226541..14227296 | 8..764 | 99 | <- | Plus |
arm_3R | 14227354..14227523 | 765..934 | 99 | | Plus |
BS07717.5prime Sequence
868 bp (835 high quality bases) assembled on 2006-01-06
> BS07717.5prime
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCCGCGGTCATCTT
TCAGTCGTGGTGGCCGCC
BS07717.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-PA | 1464 | CG12333-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 2167 | CG12333-RA | 249..1101 | 16..868 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18401631..18402193 | 733..171 | 2815 | 100 | Minus |
3R | 32079331 | 3R | 18402314..18402468 | 170..16 | 775 | 100 | Minus |
3R | 32079331 | 3R | 18401439..18401574 | 868..733 | 665 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:03:32 has no hits.
BS07717.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:26 Download gff for
BS07717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:32 Download gff for
BS07717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:01 Download gff for
BS07717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 249..1101 | 16..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:28 Download gff for
BS07717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 249..1101 | 16..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:28 Download gff for
BS07717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18401439..18401574 | 733..868 | 99 | <- | Minus |
3R | 18401632..18402193 | 171..732 | 100 | <- | Minus |
3R | 18402314..18402468 | 16..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:01 Download gff for
BS07717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14227161..14227296 | 733..868 | 99 | <- | Minus |
arm_3R | 14227354..14227915 | 171..732 | 100 | <- | Minus |
arm_3R | 14228036..14228190 | 16..170 | 100 | | Minus |
BS07717.complete Sequence
1496 bp (1496 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635961
> BS07717.complete
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTT
TCAGTCGTGGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCAC
GGGCAGCTGGGATCGGACTGCCATCCTGTGGGACGTGGAGACTGGCCTGC
CACTGCAGCCGCTCACTGGGCACGACCACGAGCTCACCCACGTGTCGGCA
CATCCCACCCAGCGCCTGGTGGTCACCGCTTCCAGGGACACTACGTTCCG
TCTATGGGACTTCCGAGAGGCAATCCCAGCGGTCTCCGTCTTCCAAGGGC
ACACGGAAACGGTTACGTCCAGTGTGTTCGCACGCGACGACAAGGTGGTG
TCCGGATCAGATGATCGTACAATCAAGGTCTGGGAGCTGCGCAACATGCG
ATCCGCCTTGGCCACCATTCGAACGGATTCCTCGGTCAATCGTTTGGCGG
TCTCCACTGGTGGAATTATCGCCATACCGCATGACAATCGACAGATCCGA
CTGTTCGATTTGAACGGGCAGAGAGTCGCCCGATTGCCACGGACCAGTCG
GCAGGGCCACCGACGGATGGTGTCGTCTGTAGCGTGGGCGGAGGAGCCGC
TGCTGGACTGCGATCTCTTCTCCTGCGGCTTCGATCGCCGCGTTTTCGGC
TGGTCCATCGTTCTTCCGAAGGACAATTGAAAGCTTTCTAGACCAT
BS07717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 1464 | CG12333-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 2167 | CG12333-RA | 249..1714 | 16..1481 | 7330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18400826..18401574 | 1481..733 | 3745 | 100 | Minus |
3R | 32079331 | 3R | 18401631..18402193 | 733..171 | 2815 | 100 | Minus |
3R | 32079331 | 3R | 18402314..18402468 | 170..16 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:43 has no hits.
BS07717.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:12 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:08 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 246..1718 | 16..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:06 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 250..1712 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:12 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 246..1718 | 16..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:32 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 250..1712 | 17..1479 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:32 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18400828..18401574 | 733..1479 | 100 | <- | Minus |
3R | 18401632..18402193 | 171..732 | 100 | <- | Minus |
3R | 18402314..18402467 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:06 Download gff for
BS07717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14226550..14227296 | 733..1479 | 100 | <- | Minus |
arm_3R | 14227354..14227915 | 171..732 | 100 | <- | Minus |
arm_3R | 14228036..14228189 | 17..170 | 100 | | Minus |
BS07717.pep Sequence
Translation from 16 to 1479
> BS07717.pep
MKASKTRAVRLTSLTEDVAAVPEDAPFRARLHVLFAQIEREFEQLYLENQ
ALQEKLDIATTTKESLIPPDARSAAGGSMSTQASSAALATPATQTDEVAG
SFLAAASSTHKSLKAKLSSATGGSKAKASNKIKAQTSRIVSSFKAPTVVS
TVVREFGGHKDGIWQVAAKAGQPIIGTASADHTACIWGVESARCLLQYQG
HAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPKKGHSSEEELDD
SDEQVEDRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDR
TAILWDVETGLPLQPLTGHDHELTHVSAHPTQRLVVTASRDTTFRLWDFR
EAIPAVSVFQGHTETVTSSVFARDDKVVSGSDDRTIKVWELRNMRSALAT
IRTDSSVNRLAVSTGGIIAIPHDNRQIRLFDLNGQRVARLPRTSRQGHRR
MVSSVAWAEEPLLDCDLFSCGFDRRVFGWSIVLPKDN*
BS07717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-PA | 487 | CG12333-PA | 1..487 | 1..487 | 2497 | 100 | Plus |
Lis-1-PG | 411 | CG8440-PG | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PF | 411 | CG8440-PF | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PB | 411 | CG8440-PB | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PA | 411 | CG8440-PA | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PG | 411 | CG8440-PG | 106..372 | 158..436 | 200 | 23.3 | Plus |
Lis-1-PF | 411 | CG8440-PF | 106..372 | 158..436 | 200 | 23.3 | Plus |
Lis-1-PB | 411 | CG8440-PB | 106..372 | 158..436 | 200 | 23.3 | Plus |
Lis-1-PG | 411 | CG8440-PG | 12..303 | 190..475 | 197 | 24.5 | Plus |
Lis-1-PF | 411 | CG8440-PF | 12..303 | 190..475 | 197 | 24.5 | Plus |
Lis-1-PB | 411 | CG8440-PB | 12..303 | 190..475 | 197 | 24.5 | Plus |