Clone Sequence Records
BS07718.3prime Sequence
962 bp (833 high quality bases) assembled on 2006-01-06
> BS07718.3prime
ATGGTCTAGAAAGCTTCTACCAGCTGAGCTCCTCCGGCAATCCGCCAGGA
TACTCGCCCGTTAGGCAAGCGGTGCAGTAGCCAGCTTTGAGTGGATTCAC
ATGGGCCTTGTTCATCTGGACGGCCTTGACCAGACCCTCCACACTCAAAT
AGGCCAGACTATCCGCACCCACGTGATCCGCCAGCTGATCCGCATTCAAT
TTGTTGGCTATTAGCTCCTCACGAGTGGGTATATTGATACCCATGTAGCA
GGGATATTGCAGCGGAGGACTGGCAATGCGAATGTGCACCTCGGTGGCGC
CGGCATCTCGCAGGAGTTTGATAATCGGTCCAATGGTATTTCCCCTCACT
ATGGAGTCATCGACTAGCACGATCCGCTTGCCCTCGACATTTTGAGCCAG
GGCACCAAACTTTTTGGCCACGCCCAACTGTCGCAATCTCGTCGAGGGTT
GGATGAACGTGCGGCCCACATAGCGATTCTTGCAGAGAACTTCCCCGAAT
GGCAGTCCCGACTCCCTGGCATAACCATGGGCAGCTGCTGTGCCCGATTC
CGGAACCGAGCTGACCAAATCCGCATCTAATGGCGATTCCCTGGCCAACT
GGCGACCACATTGCAGGCGGGCTGAGTAAACCATCTGACCCTCGAACATG
GAATCACTGCGGGCAAAGTAGACGTACTCAAAGATGCAGAATGCCATGCG
CTTATAGTCCGGTCTTTCAACGATATCCACGGTTCTATAACCATTTCGTG
ACAGCTCGATGATCTCACCGGGCTCCACCTCGCGAACATATCTGGCTCCG
ATGGAGAGGAATCCGCAGCTTTCACTACTGACCACCCAACCCTCGGCCAG
TTGGTCATTGATATTCGCATGTCCTGCATCAACGGGCACGATTTTTCCCA
AGCACAGCGGTCTATTGCCATAGGAATCGCGGACAGCGTAGATCTTATCC
TTGGGCATCACG
BS07718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10078-PB | 1644 | Prat2-RB | 699..1644 | 962..17 | 4705 | 99.8 | Minus |
| CG10078-PA | 1413 | Prat2-RA | 468..1413 | 962..17 | 4705 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RA | 1737 | CG10078-RA | 691..1638 | 962..15 | 4725 | 99.9 | Minus |
| Prat2-RB | 1932 | CG10078-RB | 886..1833 | 962..15 | 4725 | 99.9 | Minus |
| Prat-RB | 2105 | CG2867-RB | 790..1625 | 952..117 | 1000 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912098..6913045 | 15..962 | 4725 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7910078..7910913 | 117..952 | 1000 | 74.6 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:00:43 has no hits.
BS07718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:28 Download gff for
BS07718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-PB | 699..1644 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:34 Download gff for
BS07718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10078-PA | 468..1413 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:29 Download gff for
BS07718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 886..1845 | 1..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:33 Download gff for
BS07718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 886..1845 | 1..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:33 Download gff for
BS07718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912086..6913045 | 1..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:29 Download gff for
BS07718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905186..6906145 | 1..962 | 99 | | Plus |
BS07718.5prime Sequence
894 bp (832 high quality bases) assembled on 2006-01-06
> BS07718.5prime
GAAGTTATCAGTCGACATGATGGCGCAAAGTGATTCTGGAAATTGCTGTG
CCAAGCTTAATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTG
AGCGGCGTATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCA
ACCCAAAGGAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTG
CAGCCATCGCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATG
ATCTGCCTCGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGG
AATAGTGACCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGG
GCATGGGCATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTA
AAGGGTAACCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTC
GGAAGTTGTGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCAC
TGGCCATTGCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGG
GAGGTCCTGGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACT
TATTGCCCAATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATG
GACCCAATTGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTC
TCCTACTCCCTGGTCGTGATGCACAAGGATAAGATCTACGCTGTCCGCGA
TTCCTATGGCAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATG
CAGGACATGCGAATATCAATGACCAACTGGCCGAGGGTTGGGTGGTCAGT
AGTGAAAGCTGCGGATTCCCTCTCATCGGAGCCAGATATGTTCG
BS07718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10078-PB | 1644 | Prat2-RB | 1..853 | 17..869 | 4265 | 100 | Plus |
| CG10078-PA | 1413 | Prat2-RA | 1..622 | 248..869 | 3110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1932 | CG10078-RB | 188..1065 | 17..894 | 4345 | 99.8 | Plus |
| Prat2-RA | 1737 | CG10078-RA | 209..870 | 233..894 | 3265 | 99.7 | Plus |
| Prat-RB | 2105 | CG2867-RB | 249..953 | 184..888 | 975 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912866..6913527 | 894..233 | 3250 | 99.4 | Minus |
| 3R | 32079331 | 3R | 7910750..7911454 | 888..184 | 960 | 75.7 | Minus |
| 3L | 28110227 | 3L | 6914414..6914582 | 232..64 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 6914641..6914689 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:02:58 has no hits.
BS07718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:29 Download gff for
BS07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-PB | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:36 Download gff for
BS07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10078-PB | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:56 Download gff for
BS07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 183..1065 | 10..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:43 Download gff for
BS07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 183..1065 | 10..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:43 Download gff for
BS07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912866..6913527 | 233..894 | 99 | <- | Minus |
| 3L | 6914414..6914580 | 66..232 | 100 | <- | Minus |
| 3L | 6914641..6914694 | 10..65 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:56 Download gff for
BS07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905966..6906627 | 233..894 | 99 | <- | Minus |
| arm_3L | 6907514..6907680 | 66..232 | 100 | <- | Minus |
| arm_3L | 6907741..6907794 | 10..65 | 94 | | Minus |
BS07718.complete Sequence
1676 bp (1676 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635962
> BS07718.complete
GAAGTTATCAGTCGACATGATGGCGCAAAGTGATTCTGGAAATTGCTGTG
CCAAGCTTAATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTG
AGCGGCGTATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCA
ACCCAAAGGAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTG
CAGCCATCGCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATG
ATCTGCCTCGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGG
AATAGTGACCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGG
GCATGGGCATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTA
AAGGGTAACCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTC
GGAAGTTGTGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCAC
TGGCCATTGCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGG
GAGGTCCTGGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACT
TATTGCCCAATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATG
GACCCAATTGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTC
TCCTACTCCCTGGTCGTGATGCACAAGGATAAGATCTACGCTGTCCGCGA
TTCCTATGGCAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATG
CAGGACATGCGAATATCAATGACCAACTGGCCGAGGGTTGGGTGGTCAGT
AGTGAAAGCTGCGGATTCCTCTCCATCGGAGCCAGATATGTTCGCGAGGT
GGAGCCCGGTGAGATCATCGAGCTGTCACGAAATGGTTATAGAACCGTGG
ATATCGTTGAAAGACCGGACTATAAGCGCATGGCATTCTGCATCTTTGAG
TACGTCTACTTTGCCCGCAGTGATTCCATGTTCGAGGGTCAGATGGTTTA
CTCAGCCCGCCTGCAATGTGGTCGCCAGTTGGCCAGGGAATCGCCATTAG
ATGCGGATTTGGTCAGCTCGGTTCCGGAATCGGGCACAGCAGCTGCCCAT
GGTTATGCCAGGGAGTCGGGACTGCCATTCGGGGAAGTTCTCTGCAAGAA
TCGCTATGTGGGCCGCACGTTCATCCAACCCTCGACGAGATTGCGACAGT
TGGGCGTGGCCAAAAAGTTTGGTGCCCTGGCTCAAAATGTCGAGGGCAAG
CGGATCGTGCTAGTCGATGACTCCATAGTGAGGGGAAATACCATTGGACC
GATTATCAAACTCCTGCGAGATGCCGGCGCCACCGAGGTGCACATTCGCA
TTGCCAGTCCTCCGCTGCAATATCCCTGCTACATGGGTATCAATATACCC
ACTCGTGAGGAGCTAATAGCCAACAAATTGAATGCGGATCAGCTGGCGGA
TCACGTGGGTGCGGATAGTCTGGCCTATTTGAGTGTGGAGGGTCTGGTCA
AGGCCGTCCAGATGAACAAGGCCCATGTGAATCCACTCAAAGCTGGCTAC
TGCACCGCTTGCCTAACGGGCGAGTATCCTGGCGGATTGCCGGAGGAGCT
CAGCTGGTAGAAGCTTTCTAGACCAT
BS07718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1644 | CG10078-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
| Prat2-RA | 1413 | CG10078-PA | 1..1413 | 248..1660 | 7065 | 100 | Plus |
| Prat-RB | 1641 | CG2867-PB | 156..1532 | 184..1560 | 1830 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1932 | CG10078-RB | 188..1833 | 17..1662 | 8230 | 100 | Plus |
| Prat2-RA | 1737 | CG10078-RA | 209..1638 | 233..1662 | 7150 | 100 | Plus |
| Prat-RB | 2105 | CG2867-RB | 249..1625 | 184..1560 | 1830 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912098..6913527 | 1662..233 | 7150 | 100 | Minus |
| 3R | 32079331 | 3R | 7910078..7911454 | 1560..184 | 1830 | 75.5 | Minus |
| 3L | 28110227 | 3L | 6914414..6914582 | 232..64 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 6914641..6914689 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:16:44 has no hits.
BS07718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:13 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 1..1644 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:10 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 165..1827 | 10..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:47 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 188..1831 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:13 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 165..1827 | 10..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:19 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 188..1831 | 17..1660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:19 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912100..6913527 | 233..1660 | 100 | <- | Minus |
| 3L | 6914414..6914580 | 66..232 | 100 | <- | Minus |
| 3L | 6914641..6914689 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:47 Download gff for
BS07718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905200..6906627 | 233..1660 | 100 | <- | Minus |
| arm_3L | 6907514..6907680 | 66..232 | 100 | <- | Minus |
| arm_3L | 6907741..6907789 | 17..65 | 100 | | Minus |
BS07718.pep Sequence
Translation from 16 to 1659
> BS07718.pep
MMAQSDSGNCCAKLNKDECCQKTKDVILSGVSPKMFPDKIYKSVQPKGED
ATGMTCECGVFAAIACGDYPTQLDIAQMICLGLVALQHRGQESAGIVTSL
GKSSKNFSVHKGMGMINNLFNDEAIRKLKGNLGIGHTRYSTAAASEVVNC
QPFVVHTAHGALAIAHNGELVNCESLRREVLERGVGLSTHSDSELIAQSL
CCAPEDVSEHDGPNWPARIRHFMTLAPLSYSLVVMHKDKIYAVRDSYGNR
PLCLGKIVPVDAGHANINDQLAEGWVVSSESCGFLSIGARYVREVEPGEI
IELSRNGYRTVDIVERPDYKRMAFCIFEYVYFARSDSMFEGQMVYSARLQ
CGRQLARESPLDADLVSSVPESGTAAAHGYARESGLPFGEVLCKNRYVGR
TFIQPSTRLRQLGVAKKFGALAQNVEGKRIVLVDDSIVRGNTIGPIIKLL
RDAGATEVHIRIASPPLQYPCYMGINIPTREELIANKLNADQLADHVGAD
SLAYLSVEGLVKAVQMNKAHVNPLKAGYCTACLTGEYPGGLPEELSW*
BS07718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-PB | 547 | CG10078-PB | 1..547 | 1..547 | 2865 | 100 | Plus |
| Prat2-PA | 470 | CG10078-PA | 1..470 | 78..547 | 2446 | 100 | Plus |
| Prat-PB | 546 | CG2867-PB | 45..546 | 49..547 | 2212 | 83.5 | Plus |
| Prat-PA | 546 | CG2867-PA | 45..546 | 49..547 | 2212 | 83.5 | Plus |
