Clone Sequence Records
BS07720.3prime Sequence
911 bp (819 high quality bases) assembled on 2006-01-06
> BS07720.3prime
ATGGTCTAGAAAGCTTCTAGGAAAGTACAGCATCGCTGAACCAAAATGTC
ATACGATCCCCATCGGTAAGTTTTTGAGGTACTTTGATCGAGTGATTCCG
TGCCACGGAGTTGTAACGCCTAAAGTTTTCATTTCCGGCGTTTAGGCGAT
CCGCCATTTCGGCAGCCTGCTGGTTCAAGGACTGTCTGTAGGATAAAGCT
GCTTCCGAATGAATATAGCTGGGGCCATCCTTGGATTCAGGTAGTACATT
TGACTTGTTGGTCTTTGAAGGGACACGATCATTCCAAGAGTCTTGCCTTG
CATTACTTGTGGCAACAACAGACGGGGCTTGTTCTTGAGAACTGGTCAGC
TTCTTATCTTGCATTTTAAAATCGGAATGCTTTGGTTTTGCAGATTTTAG
AGATTGTTTCGAGTCTGAGTCAGCAGGATTTAATTTGAAGGAGCGCTGCG
TTCCAGTTTCTGATGGCTTATTTGAAACTTTTGATTTCATTGTGGTAGAG
GAAGCTTTGGCTGCTTCTGAGAAATGTTTCGACTTCAAAATTGACTTCGG
AGTGAGGGTGGTATTTGAGGAAATACTGTTGCCTATTGCAGATCGTTTCA
ATGTTATGTTCGAAGACTTTGAGGCCACGTCACCCTCACTTTGCTTATTT
GTGCAGCTCGTCTTGGATGCCGCACTGAATTGTGATATGGATAATTTGGA
ATTTGCTCTACCATCACCACTGACCTGACGGTTTGACCTTATTGGCATTA
GGGTGCGCAAAGAGTCCTTTGAAACCGCTTCCTTTGATTGAGATACCTTG
GACAGCTTCGTTGTTGAAACACCACCCGCATCAATGCGATCTTTTTCATT
GAGAACTTCGGGCTGCTTCTTGGCCACGGCCATCTCTTCATTGATGGGCT
TGGAAAATGTC
BS07720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-PA | 1104 | CG4983-RA | 215..1104 | 906..17 | 4400 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1666 | CG4983-RB | 371..1262 | 906..15 | 4430 | 99.8 | Minus |
| CG4983-RA | 1330 | CG4983-RA | 362..1253 | 906..15 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11652869..11653760 | 906..15 | 4430 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:22:42 has no hits.
BS07720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:32 Download gff for
BS07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 211..1104 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:39 Download gff for
BS07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 211..1104 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:25 Download gff for
BS07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 358..1253 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:01 Download gff for
BS07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 358..1253 | 15..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:01 Download gff for
BS07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11652865..11653760 | 15..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:25 Download gff for
BS07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11652865..11653760 | 15..911 | 99 | | Minus |
BS07720.5prime Sequence
899 bp (778 high quality bases) assembled on 2006-01-06
> BS07720.5prime
GAAGTTATCAGTCGACATGTTTCCTGATGACTTCGACGTAGAACCCTTCA
ATCCATTCAATGTGGGACCACCCAATAGTGGAGCCCGATCTGAATTCAAA
ATACCTACATGCGTTACGTATCCGCCACCGGTATTCGTACCCAAGTCCGA
ATATGTACAACCATCAGAGGAGTTGGTTTCCCGGAAGAGCAACCAAAGTA
TAGGCAAGTCGACTATCGGCGAGGTGGACATTTCCAAGGCCATCAATGAA
GAGATGGCCGTGGCCAAGAAGCAGGCCGAAGTTCTCAATGAAAAAGATCG
CATTGATGCGGGTGGTGTTTCAACAACGAAGCTGTCCAAGGTATCTCAAT
CAAAGGAAGCGGTTTCAAAGGACTCTTTGCGCACCCTAATGCCAATAAGG
TCAAACCGTCAGGTCAGTGGTGATGGTAGAGCAAATTCCAAATTATCCAT
ATCACAATTCAGTGCGGCATCCAAGACGAGCTGCACAAATAAGCAAAGTG
AGGGTGACGTGGCCTCAAAGTCTTCGAACATAACATTGAAACGATCTGCA
ATAGGCAACAGTATTTCCTCAAATACCACCCTCACTCCGAAGTCAATTTT
GAAGTCGAAACATTTCTCAGAAGCAGCCAAAGCTTCCTCTACCACAATGA
AATCAAAAGTTTCAAATAAGCCATCAGAAACTGGAACGCAGCGCTCCTTC
AAATTAAATCCTGCTGACTCAGACTCGAAACAATCTCTAAAATCTGCAAA
ACCAAAGCATTCCGATTTTAAAATGCAAGATAAGAAGCTGACCAGTTCTC
AAGAACAAGCCCCGTCTGTTGTTGCCACAAGTAATGCAAGGCAAGACTCT
TGGAATGATCGTGTCCCTTCAAAGACCAACAAGTCAAATGTACTACCTG
BS07720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-PA | 1104 | CG4983-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1666 | CG4983-RB | 155..1039 | 15..899 | 4425 | 100 | Plus |
| CG4983-RA | 1330 | CG4983-RA | 146..1030 | 15..899 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11652653..11653537 | 15..899 | 4425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:10:26 has no hits.
BS07720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:33 Download gff for
BS07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:41 Download gff for
BS07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:30:00 Download gff for
BS07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1030 | 15..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:58 Download gff for
BS07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1030 | 15..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:58 Download gff for
BS07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11652653..11653537 | 15..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:30:00 Download gff for
BS07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11652653..11653537 | 15..899 | 100 | | Plus |
BS07720.complete Sequence
1136 bp (1136 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638805
> BS07720.complete
GAAGTTATCAGTCGACATGTTTCCTGATGACTTCGACGTAGAACCCTTCA
ATCCATTCAATGTGGGACCACCCAATAGTGGAGCCCGATCTGAATTCAAA
ATACCTACATGCGTTACGTATCCGCCACCGGTATTCGTACCCAAGTCCGA
ATATGTACAACCATCAGAGGAGTTGGTTTCCCGGAAGAGCAACCAAAGTA
TAGGCAAGTCGACTATCGGCGAGGTGGACATTTCCAAGGCCATCAATGAA
GAGATGGCCGTGGCCAAGAAGCAGGCCGAAGTTCTCAATGAAAAAGATCG
CATTGATGCGGGTGGTGTTTCAACAACGAAGCTGTCCAAGGTATCTCAAT
CAAAGGAAGCGGTTTCAAAGGACTCTTTGCGCACCCTAATGCCAATAAGG
TCAAACCGTCAGGTCAGTGGTGATGGTAGAGCAAATTCCAAATTATCCAT
ATCACAATTCAGTGCGGCATCCAAGACGAGCTGCACAAATAAGCAAAGTG
AGGGTGACGTGGCCTCAAAGTCTTCGAACATAACATTGAAACGATCTGCA
ATAGGCAACAGTATTTCCTCAAATACCACCCTCACTCCGAAGTCAATTTT
GAAGTCGAAACATTTCTCAGAAGCAGCCAAAGCTTCCTCTACCACAATGA
AATCAAAAGTTTCAAATAAGCCATCAGAAACTGGAACGCAGCGCTCCTTC
AAATTAAATCCTGCTGACTCAGACTCGAAACAATCTCTAAAATCTGCAAA
ACCAAAGCATTCCGATTTTAAAATGCAAGATAAGAAGCTGACCAGTTCTC
AAGAACAAGCCCCGTCTGTTGTTGCCACAAGTAATGCAAGGCAAGACTCT
TGGAATGATCGTGTCCCTTCAAAGACCAACAAGTCAAATGTACTACCTGA
ATCCAAGGATGGCCCCAGCTATATTCATTCGGAAGCAGCTTTATCCTACA
GACAGTCCTTGAACCAGCAGGCTGCCGAAATGGCGGATCGCCTAAACGCC
GGAAATGAAAACTTTAGGCGTTACAACTCCGTGGCACGGAATCACTCGAT
CAAAGTACCTCAAAAACTTACCGATGGGGATCGTATGACATTTTGGTTCA
GCGATGCTGTACTTTCCTAGAAGCTTTCTAGACCAT
BS07720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1104 | CG4983-PB | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| CG4983-RA | 1104 | CG4983-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-RB | 1666 | CG4983-RB | 155..1262 | 15..1122 | 5540 | 100 | Plus |
| CG4983-RA | 1330 | CG4983-RA | 146..1253 | 15..1122 | 5540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11652653..11653760 | 15..1122 | 5540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:15 has no hits.
BS07720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:38 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 1..1104 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:29 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1253 | 15..1122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:17 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 154..1251 | 23..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:38 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 146..1253 | 15..1122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:16 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4983-RA | 154..1251 | 23..1120 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:16 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11652661..11653758 | 23..1120 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:17 Download gff for
BS07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11652661..11653758 | 23..1120 | 100 | | Plus |
BS07720.pep Sequence
Translation from 16 to 1119
> BS07720.pep
MFPDDFDVEPFNPFNVGPPNSGARSEFKIPTCVTYPPPVFVPKSEYVQPS
EELVSRKSNQSIGKSTIGEVDISKAINEEMAVAKKQAEVLNEKDRIDAGG
VSTTKLSKVSQSKEAVSKDSLRTLMPIRSNRQVSGDGRANSKLSISQFSA
ASKTSCTNKQSEGDVASKSSNITLKRSAIGNSISSNTTLTPKSILKSKHF
SEAAKASSTTMKSKVSNKPSETGTQRSFKLNPADSDSKQSLKSAKPKHSD
FKMQDKKLTSSQEQAPSVVATSNARQDSWNDRVPSKTNKSNVLPESKDGP
SYIHSEAALSYRQSLNQQAAEMADRLNAGNENFRRYNSVARNHSIKVPQK
LTDGDRMTFWFSDAVLS*
BS07720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4983-PB | 367 | CG4983-PB | 1..367 | 1..367 | 1846 | 100 | Plus |
| CG4983-PA | 367 | CG4983-PA | 1..367 | 1..367 | 1846 | 100 | Plus |
