Clone Sequence Records
BS07722.3prime Sequence
898 bp (827 high quality bases) assembled on 2006-01-06
> BS07722.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTCGTGGAAACGGAGGATGGCGCGT
CCGGGTATCTCGGAGTTGCACAGCTTGGCGATGACCTCGGCCGCCTGCTC
GCAGGGGAAGACGGAGTGCGGCGGCGGCTCGATCTTCTTGTTGGCTACCA
GCTCCACCAGCTCAGCCAGCTGCTCGGCGGTGCCGTTCGAGATGGCGATG
ATCTCCTGCTGGTACTGCTCCGACAGGCGCGAGAACTTGGGCAGCAGCTT
CTCGGCCACCTCGTCGCTGATCAGCACAACGCCGCCCTTCGACAAGCAGT
GCATCGAGCGGTGCAGACTCCTGGAGGTTGTGCCAAAGTCAATGACCACG
TCCACGGCTCCGCCGCACACGTCCTTGGTGCGCTCGATCAGCTGCGGCTC
GTACAGGCATTCGTTCCACTGGACCACGCTGACATTTTTGATTTCTGTGG
CCAGGCGGAAGCCCTCGTCCCGCAGACTGGCCACTGTGATGTCCACGTTG
TCGGCTCCAGTTGTGGCAAAGTGATAGGAGGCGATGCGCACGGCCCAGAG
TGCCAGGCCGCCAGTGCCCACGATGAGGATCTTGGGCTTCCGCTTCGGCT
CCGTGGCAGCCCGCTGGCTGAGAATCTGTGTGACAACGGCCTGAGCCTTG
AAGACGGCATTCCAGGCGAGCAGGGCGCCCGTCGGCAGCATGGCGGCCAC
CTCCATGGGCAGACTGTCGGGAATGGGCACCACGTGCTTCAGGTCCGGCA
CGACCAGCAGCTCGGCATAGCCGGCTGGGGTCTCATCGAACGGATAGACG
ATCACGCGCTGTCCAATGCGCAGGCCACGGGTGTTGGGCTCGGTGATCTC
GGAGCCCAGGGACTCGATGACGCCGGCCACCTCGAAGCCGGGAAAGAA
BS07722.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1600-PA | 1146 | CG1600-RA | 265..1146 | 898..17 | 4335 | 99.6 | Minus |
CG1600-PC | 1305 | CG1600-RC | 424..1305 | 898..17 | 4335 | 99.6 | Minus |
CG1600-PB | 1146 | CG1600-RB | 265..1146 | 898..17 | 4335 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drat-RD | 2102 | CG1600-RD | 684..1565 | 898..17 | 4365 | 99.7 | Minus |
Drat-RB | 1892 | CG1600-RB | 474..1355 | 898..17 | 4365 | 99.7 | Minus |
Drat-RC | 1938 | CG1600-RC | 637..1518 | 898..17 | 4365 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7527140..7527603 | 435..898 | 2275 | 99.4 | Plus |
2R | 25286936 | 2R | 7526655..7527072 | 17..434 | 2090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:42:46 has no hits.
BS07722.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:35 Download gff for
BS07722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-PA | 267..1146 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:46 Download gff for
BS07722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-PB | 267..1146 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:37:43 Download gff for
BS07722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drat-RC | 637..1520 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:51 Download gff for
BS07722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drat-RC | 637..1520 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:51 Download gff for
BS07722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7526653..7527072 | 13..434 | 99 | <- | Plus |
2R | 7527140..7527603 | 435..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:37:43 Download gff for
BS07722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3414158..3414577 | 13..434 | 99 | <- | Plus |
arm_2R | 3414645..3415108 | 435..898 | 99 | | Plus |
BS07722.5prime Sequence
905 bp (746 high quality bases) assembled on 2006-01-06
> BS07722.5prime
GAAGTTATCAGTCGACATGCCGGTCGATATATGCAGTCAACCGCACAATT
TGCTCAGTTCAATGAGTGGAACAACAGATACCTCGTTGTCGCTGAACTCA
TTGTCCCTGACTTCCGTTCTGCCGCCAACGGATCCCGATCACCATAATCC
ACACAGTACACACAGTACGCACAACATGAACAAGCTGTGCCGCCAAGTGT
CAATTGAGTCGCCCGGTCCGGGCGCCAAGAACTGCGTCTTCAACTTCTTC
GTGCCCATCGAGGACACGCCGGCGTTGGGCGCCCGCATCCGGATCGTTTG
CGCCGGAGCCTGCTATCGTCGTCGCGATCGCGCCAACTCCATCACCAGCA
TGTCCTCAGTGTCCTCGGAGCTGAGCGACTACTGTCCGTCGGTGAACTCG
ATGTCCTCGCCCGCACACCAGGGCATCCGGGAGGGCTCCTTCTTTCCCGG
CTTCGAGGTGGCCGGCGTCATCGAGTCCCTGGGCTCGGAGATCACCGAGG
CCAACAACCGTGGCCTGCGCATTGGACAGCGCGTGATCGTCTATCCGTTC
GATGAGACCCCAGCCGGCTATGCCGAGCTGCTGGTCGTGCCGGACCTGAA
GCACGTGGTGCCCATTCCCGACAGTCTGCCCATGGAGGTGGCCGCCATGC
TGCCGACGGGCGCCCTGCTCGCCTGGAATGCCGTCTTCAAGGCTCAGGCC
GTTGTCACACAGATTCTCAGCCAGCGGGCTGCCACGGAGCCGAAGCGGAA
GCCCAAGATCCTCATCGTGGGCACTGGCGGCCTGGCACTCTGGGCCGTGC
GCATCGCCTCCTATCACTTTGCCACAACTGGAGCCGACAACGTGGACATC
ACAGTGGGCAGTCTGCGGGACGAGGGCTTCCGCCTGGCCACAGAAATCAA
AATGT
BS07722.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1600-PC | 1305 | CG1600-RC | 1..886 | 17..902 | 4405 | 99.8 | Plus |
CG1600-PA | 1146 | CG1600-RA | 1..727 | 176..902 | 3610 | 99.8 | Plus |
CG1600-PB | 1146 | CG1600-RB | 1..727 | 176..902 | 3610 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drat-RC | 1938 | CG1600-RC | 214..1099 | 17..902 | 4415 | 99.9 | Plus |
Drat-RA | 2021 | CG1600-RA | 228..1065 | 65..902 | 4175 | 99.9 | Plus |
Drat-RD | 2102 | CG1600-RD | 311..1146 | 67..902 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7527141..7527978 | 902..65 | 4175 | 99.9 | Minus |
2R | 25286936 | 2R | 7529028..7529077 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:12:30 has no hits.
BS07722.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:36 Download gff for
BS07722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-PC | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:48 Download gff for
BS07722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-PC | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:27 Download gff for
BS07722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drat-RC | 207..1103 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:31 Download gff for
BS07722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drat-RC | 207..1103 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:31 Download gff for
BS07722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7527138..7527976 | 67..905 | 99 | <- | Minus |
2R | 7529028..7529084 | 9..66 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:27 Download gff for
BS07722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3414643..3415481 | 67..905 | 99 | <- | Minus |
arm_2R | 3416533..3416589 | 9..66 | 94 | | Minus |
BS07722.complete Sequence
1337 bp (1337 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635963
> BS07722.complete
GAAGTTATCAGTCGACATGCCGGTCGATATATGCAGTCAACCGCACAATT
TGCTCAGTTCAATGAGTGGAACAACAGATACCTCGTTGTCGCTGAACTCA
TTGTCCCTGACTTCCGTTCTGCCGCCAACGGATCCCGATCACCATAATCC
ACACAGTACACACAGTACGCACAACATGAACAAGCTGTGCCGCCAAGTGT
CAATTGAGTCGCCCGGTCCGGGCGCCAAGAACTGCGTCTTCAACTTCTTC
GTGCCCATCGAGGACACGCCGGCGTTGGGCGCCCGCATCCGGATCGTTTG
CGCCGGAGCCTGCTATCGTCGTCGCGATCGCGCCAACTCCATCACCAGCA
TGTCCTCAGTGTCCTCGGAGCTGAGCGACTACTGTCCGTCGGTGAACTCG
ATGTCCTCGCCCGCACACCAGGGCATCCGGGAGGGCTCCTTCTTTCCCGG
CTTCGAGGTGGCCGGCGTCATCGAGTCCCTGGGCTCGGAGATCACCGAGG
CCAACAACCGTGGCCTGCGCATTGGACAGCGCGTGATCGTCTATCCGTTC
GATGAGACCCCAGCCGGCTATGCCGAGCTGCTGGTCGTGCCGGACCTGAA
GCACGTGGTGCCCATTCCCGACAGTCTGCCCATGGAGGTGGCCGCCATGC
TGCCGACGGGCGCCCTGCTCGCCTGGAATGCCGTCTTCAAGGCTCAGGCC
GTTGTCACACAGATTCTCAGCCAGCGGGCTGCCACGGAGCCGAAGCGGAA
GCCCAAGATCCTCATCGTGGGCACTGGCGGCCTGGCACTCTGGGCCGTGC
GCATCGCCTCCTATCACTTTGCCACAACTGGAGCCGACAACGTGGACATC
ACAGTGGCCAGTCTGCGGGACGAGGGCTTCCGCCTGGCCACAGAAATCAA
AAATGTCAGCGTGGTCCAGTGGAACGAATGCCTGTACGAGCCGCAGCTGA
TCGAGCGCACCAAGGACGTGTGCGGCGGAGCCGTGGACGTGGTCATTGAC
TTTGGCACAACCTCCAGGAGTCTGCACCGCTCGATGCACTGCTTGTCGAA
GGGCGGCGTTGTGCTGATCAGCGACGAGGTGGCCGAGAAGCTGCTGCCCA
AGTTCTCGCGCCTGTCGGAGCAGTACCAGCAGGAGATCATCGCCATCTCG
AACGGCACCGCCGAGCAGCTGGCTGAGCTGGTGGAGCTGGTAGCCAACAA
GAAGATCGAGCCGCCGCCGCACTCCGTCTTCCCCTGCGAGCAGGCGGCCG
AGGTCATCGCCAAGCTGTGCAACTCCGAGATACCCGGACGCGCCATCCTC
CGTTTCCACGACATTGAGTAGAAGCTTTCTAGACCAT
BS07722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drat-RC | 1305 | CG1600-PC | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Drat-RD | 1146 | CG1600-PD | 1..1146 | 176..1321 | 5730 | 100 | Plus |
Drat-RB | 1146 | CG1600-PB | 1..1146 | 176..1321 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drat-RC | 1938 | CG1600-RC | 214..1518 | 17..1321 | 6525 | 100 | Plus |
Drat-RA | 2021 | CG1600-RA | 228..1484 | 65..1321 | 6285 | 100 | Plus |
Drat-RD | 2102 | CG1600-RD | 311..1565 | 67..1321 | 6275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7527140..7527978 | 903..65 | 4195 | 100 | Minus |
2R | 25286936 | 2R | 7526655..7527072 | 1321..904 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 7529028..7529077 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:22:57 has no hits.
BS07722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:39 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-RC | 1..1305 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:30 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-RC | 202..1515 | 9..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:07 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drat-RC | 214..1518 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:39 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1600-RC | 202..1515 | 9..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:37 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drat-RC | 214..1518 | 17..1321 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:37 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7526655..7527072 | 904..1321 | 100 | <- | Minus |
2R | 7527140..7527976 | 67..903 | 100 | <- | Minus |
2R | 7529028..7529077 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:07 Download gff for
BS07722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3414160..3414577 | 904..1321 | 100 | <- | Minus |
arm_2R | 3414645..3415481 | 67..903 | 100 | <- | Minus |
arm_2R | 3416533..3416582 | 17..66 | 100 | | Minus |
BS07722.pep Sequence
Translation from 16 to 1320
> BS07722.pep
MPVDICSQPHNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHS
THNMNKLCRQVSIESPGPGAKNCVFNFFVPIEDTPALGARIRIVCAGACY
RRRDRANSITSMSSVSSELSDYCPSVNSMSSPAHQGIREGSFFPGFEVAG
VIESLGSEITEANNRGLRIGQRVIVYPFDETPAGYAELLVVPDLKHVVPI
PDSLPMEVAAMLPTGALLAWNAVFKAQAVVTQILSQRAATEPKRKPKILI
VGTGGLALWAVRIASYHFATTGADNVDITVASLRDEGFRLATEIKNVSVV
QWNECLYEPQLIERTKDVCGGAVDVVIDFGTTSRSLHRSMHCLSKGGVVL
ISDEVAEKLLPKFSRLSEQYQQEIIAISNGTAEQLAELVELVANKKIEPP
PHSVFPCEQAAEVIAKLCNSEIPGRAILRFHDIE*
BS07722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drat-PC | 434 | CG1600-PC | 1..434 | 1..434 | 2235 | 100 | Plus |
Drat-PD | 381 | CG1600-PD | 1..381 | 54..434 | 1948 | 100 | Plus |
Drat-PB | 381 | CG1600-PB | 1..381 | 54..434 | 1948 | 100 | Plus |
Drat-PA | 381 | CG1600-PA | 1..381 | 54..434 | 1948 | 100 | Plus |