Clone BS07722 Report

Search the DGRC for BS07722

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptDrat-RC
Protein status:BS07722.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07722.3prime Sequence

898 bp (827 high quality bases) assembled on 2006-01-06

> BS07722.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTCGTGGAAACGGAGGATGGCGCGT
CCGGGTATCTCGGAGTTGCACAGCTTGGCGATGACCTCGGCCGCCTGCTC
GCAGGGGAAGACGGAGTGCGGCGGCGGCTCGATCTTCTTGTTGGCTACCA
GCTCCACCAGCTCAGCCAGCTGCTCGGCGGTGCCGTTCGAGATGGCGATG
ATCTCCTGCTGGTACTGCTCCGACAGGCGCGAGAACTTGGGCAGCAGCTT
CTCGGCCACCTCGTCGCTGATCAGCACAACGCCGCCCTTCGACAAGCAGT
GCATCGAGCGGTGCAGACTCCTGGAGGTTGTGCCAAAGTCAATGACCACG
TCCACGGCTCCGCCGCACACGTCCTTGGTGCGCTCGATCAGCTGCGGCTC
GTACAGGCATTCGTTCCACTGGACCACGCTGACATTTTTGATTTCTGTGG
CCAGGCGGAAGCCCTCGTCCCGCAGACTGGCCACTGTGATGTCCACGTTG
TCGGCTCCAGTTGTGGCAAAGTGATAGGAGGCGATGCGCACGGCCCAGAG
TGCCAGGCCGCCAGTGCCCACGATGAGGATCTTGGGCTTCCGCTTCGGCT
CCGTGGCAGCCCGCTGGCTGAGAATCTGTGTGACAACGGCCTGAGCCTTG
AAGACGGCATTCCAGGCGAGCAGGGCGCCCGTCGGCAGCATGGCGGCCAC
CTCCATGGGCAGACTGTCGGGAATGGGCACCACGTGCTTCAGGTCCGGCA
CGACCAGCAGCTCGGCATAGCCGGCTGGGGTCTCATCGAACGGATAGACG
ATCACGCGCTGTCCAATGCGCAGGCCACGGGTGTTGGGCTCGGTGATCTC
GGAGCCCAGGGACTCGATGACGCCGGCCACCTCGAAGCCGGGAAAGAA

BS07722.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1600-PA 1146 CG1600-RA 265..1146 898..17 4335 99.6 Minus
CG1600-PC 1305 CG1600-RC 424..1305 898..17 4335 99.6 Minus
CG1600-PB 1146 CG1600-RB 265..1146 898..17 4335 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-RD 2102 CG1600-RD 684..1565 898..17 4365 99.7 Minus
Drat-RB 1892 CG1600-RB 474..1355 898..17 4365 99.7 Minus
Drat-RC 1938 CG1600-RC 637..1518 898..17 4365 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7527140..7527603 435..898 2275 99.4 Plus
2R 25286936 2R 7526655..7527072 17..434 2090 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:42:46 has no hits.

BS07722.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:35 Download gff for BS07722.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1600-PA 267..1146 17..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:46 Download gff for BS07722.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1600-PB 267..1146 17..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:37:43 Download gff for BS07722.3prime
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 637..1520 13..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:51 Download gff for BS07722.3prime
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 637..1520 13..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:51 Download gff for BS07722.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7526653..7527072 13..434 99 <- Plus
2R 7527140..7527603 435..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:37:43 Download gff for BS07722.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3414158..3414577 13..434 99 <- Plus
arm_2R 3414645..3415108 435..898 99   Plus

BS07722.5prime Sequence

905 bp (746 high quality bases) assembled on 2006-01-06

> BS07722.5prime
GAAGTTATCAGTCGACATGCCGGTCGATATATGCAGTCAACCGCACAATT
TGCTCAGTTCAATGAGTGGAACAACAGATACCTCGTTGTCGCTGAACTCA
TTGTCCCTGACTTCCGTTCTGCCGCCAACGGATCCCGATCACCATAATCC
ACACAGTACACACAGTACGCACAACATGAACAAGCTGTGCCGCCAAGTGT
CAATTGAGTCGCCCGGTCCGGGCGCCAAGAACTGCGTCTTCAACTTCTTC
GTGCCCATCGAGGACACGCCGGCGTTGGGCGCCCGCATCCGGATCGTTTG
CGCCGGAGCCTGCTATCGTCGTCGCGATCGCGCCAACTCCATCACCAGCA
TGTCCTCAGTGTCCTCGGAGCTGAGCGACTACTGTCCGTCGGTGAACTCG
ATGTCCTCGCCCGCACACCAGGGCATCCGGGAGGGCTCCTTCTTTCCCGG
CTTCGAGGTGGCCGGCGTCATCGAGTCCCTGGGCTCGGAGATCACCGAGG
CCAACAACCGTGGCCTGCGCATTGGACAGCGCGTGATCGTCTATCCGTTC
GATGAGACCCCAGCCGGCTATGCCGAGCTGCTGGTCGTGCCGGACCTGAA
GCACGTGGTGCCCATTCCCGACAGTCTGCCCATGGAGGTGGCCGCCATGC
TGCCGACGGGCGCCCTGCTCGCCTGGAATGCCGTCTTCAAGGCTCAGGCC
GTTGTCACACAGATTCTCAGCCAGCGGGCTGCCACGGAGCCGAAGCGGAA
GCCCAAGATCCTCATCGTGGGCACTGGCGGCCTGGCACTCTGGGCCGTGC
GCATCGCCTCCTATCACTTTGCCACAACTGGAGCCGACAACGTGGACATC
ACAGTGGGCAGTCTGCGGGACGAGGGCTTCCGCCTGGCCACAGAAATCAA
AATGT

BS07722.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1600-PC 1305 CG1600-RC 1..886 17..902 4405 99.8 Plus
CG1600-PA 1146 CG1600-RA 1..727 176..902 3610 99.8 Plus
CG1600-PB 1146 CG1600-RB 1..727 176..902 3610 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-RC 1938 CG1600-RC 214..1099 17..902 4415 99.9 Plus
Drat-RA 2021 CG1600-RA 228..1065 65..902 4175 99.9 Plus
Drat-RD 2102 CG1600-RD 311..1146 67..902 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7527141..7527978 902..65 4175 99.9 Minus
2R 25286936 2R 7529028..7529077 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:12:30 has no hits.

BS07722.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:36 Download gff for BS07722.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1600-PC 1..890 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:48 Download gff for BS07722.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1600-PC 1..890 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:27 Download gff for BS07722.5prime
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 207..1103 9..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:31 Download gff for BS07722.5prime
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 207..1103 9..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:31 Download gff for BS07722.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7527138..7527976 67..905 99 <- Minus
2R 7529028..7529084 9..66 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:27 Download gff for BS07722.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3414643..3415481 67..905 99 <- Minus
arm_2R 3416533..3416589 9..66 94   Minus

BS07722.complete Sequence

1337 bp (1337 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635963

> BS07722.complete
GAAGTTATCAGTCGACATGCCGGTCGATATATGCAGTCAACCGCACAATT
TGCTCAGTTCAATGAGTGGAACAACAGATACCTCGTTGTCGCTGAACTCA
TTGTCCCTGACTTCCGTTCTGCCGCCAACGGATCCCGATCACCATAATCC
ACACAGTACACACAGTACGCACAACATGAACAAGCTGTGCCGCCAAGTGT
CAATTGAGTCGCCCGGTCCGGGCGCCAAGAACTGCGTCTTCAACTTCTTC
GTGCCCATCGAGGACACGCCGGCGTTGGGCGCCCGCATCCGGATCGTTTG
CGCCGGAGCCTGCTATCGTCGTCGCGATCGCGCCAACTCCATCACCAGCA
TGTCCTCAGTGTCCTCGGAGCTGAGCGACTACTGTCCGTCGGTGAACTCG
ATGTCCTCGCCCGCACACCAGGGCATCCGGGAGGGCTCCTTCTTTCCCGG
CTTCGAGGTGGCCGGCGTCATCGAGTCCCTGGGCTCGGAGATCACCGAGG
CCAACAACCGTGGCCTGCGCATTGGACAGCGCGTGATCGTCTATCCGTTC
GATGAGACCCCAGCCGGCTATGCCGAGCTGCTGGTCGTGCCGGACCTGAA
GCACGTGGTGCCCATTCCCGACAGTCTGCCCATGGAGGTGGCCGCCATGC
TGCCGACGGGCGCCCTGCTCGCCTGGAATGCCGTCTTCAAGGCTCAGGCC
GTTGTCACACAGATTCTCAGCCAGCGGGCTGCCACGGAGCCGAAGCGGAA
GCCCAAGATCCTCATCGTGGGCACTGGCGGCCTGGCACTCTGGGCCGTGC
GCATCGCCTCCTATCACTTTGCCACAACTGGAGCCGACAACGTGGACATC
ACAGTGGCCAGTCTGCGGGACGAGGGCTTCCGCCTGGCCACAGAAATCAA
AAATGTCAGCGTGGTCCAGTGGAACGAATGCCTGTACGAGCCGCAGCTGA
TCGAGCGCACCAAGGACGTGTGCGGCGGAGCCGTGGACGTGGTCATTGAC
TTTGGCACAACCTCCAGGAGTCTGCACCGCTCGATGCACTGCTTGTCGAA
GGGCGGCGTTGTGCTGATCAGCGACGAGGTGGCCGAGAAGCTGCTGCCCA
AGTTCTCGCGCCTGTCGGAGCAGTACCAGCAGGAGATCATCGCCATCTCG
AACGGCACCGCCGAGCAGCTGGCTGAGCTGGTGGAGCTGGTAGCCAACAA
GAAGATCGAGCCGCCGCCGCACTCCGTCTTCCCCTGCGAGCAGGCGGCCG
AGGTCATCGCCAAGCTGTGCAACTCCGAGATACCCGGACGCGCCATCCTC
CGTTTCCACGACATTGAGTAGAAGCTTTCTAGACCAT

BS07722.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-RC 1305 CG1600-PC 1..1305 17..1321 6525 100 Plus
Drat-RD 1146 CG1600-PD 1..1146 176..1321 5730 100 Plus
Drat-RB 1146 CG1600-PB 1..1146 176..1321 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-RC 1938 CG1600-RC 214..1518 17..1321 6525 100 Plus
Drat-RA 2021 CG1600-RA 228..1484 65..1321 6285 100 Plus
Drat-RD 2102 CG1600-RD 311..1565 67..1321 6275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7527140..7527978 903..65 4195 100 Minus
2R 25286936 2R 7526655..7527072 1321..904 2090 100 Minus
2R 25286936 2R 7529028..7529077 66..17 250 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:22:57 has no hits.

BS07722.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:39 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 1..1305 17..1321 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:30 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 202..1515 9..1325 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:07 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 214..1518 17..1321 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:39 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
CG1600-RC 202..1515 9..1325 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:37 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
Drat-RC 214..1518 17..1321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:37 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7526655..7527072 904..1321 100 <- Minus
2R 7527140..7527976 67..903 100 <- Minus
2R 7529028..7529077 17..66 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:07 Download gff for BS07722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3414160..3414577 904..1321 100 <- Minus
arm_2R 3414645..3415481 67..903 100 <- Minus
arm_2R 3416533..3416582 17..66 100   Minus

BS07722.pep Sequence

Translation from 16 to 1320

> BS07722.pep
MPVDICSQPHNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHS
THNMNKLCRQVSIESPGPGAKNCVFNFFVPIEDTPALGARIRIVCAGACY
RRRDRANSITSMSSVSSELSDYCPSVNSMSSPAHQGIREGSFFPGFEVAG
VIESLGSEITEANNRGLRIGQRVIVYPFDETPAGYAELLVVPDLKHVVPI
PDSLPMEVAAMLPTGALLAWNAVFKAQAVVTQILSQRAATEPKRKPKILI
VGTGGLALWAVRIASYHFATTGADNVDITVASLRDEGFRLATEIKNVSVV
QWNECLYEPQLIERTKDVCGGAVDVVIDFGTTSRSLHRSMHCLSKGGVVL
ISDEVAEKLLPKFSRLSEQYQQEIIAISNGTAEQLAELVELVANKKIEPP
PHSVFPCEQAAEVIAKLCNSEIPGRAILRFHDIE*

BS07722.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
Drat-PC 434 CG1600-PC 1..434 1..434 2235 100 Plus
Drat-PD 381 CG1600-PD 1..381 54..434 1948 100 Plus
Drat-PB 381 CG1600-PB 1..381 54..434 1948 100 Plus
Drat-PA 381 CG1600-PA 1..381 54..434 1948 100 Plus