Clone Sequence Records
BS07725.3prime Sequence
918 bp (820 high quality bases) assembled on 2006-01-06
> BS07725.3prime
ATGGTCTAGAAAGCTTCTACACGATCTCGTACTTTTCCACGAACAGAATG
GACTCGCTTGAATACTTGACCGCCGCCTCGCTGTCCACCTGCACCACATC
CTGGGCCACGACGCCCGCATACGGCGTTTTCGAGACGAAGGACACCTGCA
AGGGGAAGAAGTCACCGGGAATGGAGGCACTGCAGCTGAACTCCATAGAA
CCGGACTTGTTGGCGGCATCGATTATTGGAATGTGCCACTGGAGCACATG
CTTGCGTGAATCGTAGTTGTAGGTGCCGTCGTACTCCGCCACCGAAGGCT
GCACATTCATTGGCAAGGGAATGACAATGGCCACGTCCTGCAGCTCTAGC
TGCTGCGCCTCCAGTTCATACTCAATGTTAACATCGCATCCACCCTCTCC
ATTATCCGATGGCCAGCAGTTAATGGTCAGCGGGACTGCCGACTCGTCCT
GCGAGACGAAGCGCCACTTGAGCACACCCACATCGGTGTTAAGGGGAAAC
GGCTTGCCCAAGTTCTTTAGTCCGATGGTAGTGCGCGACTTGAACAGCTC
CTTGTCCACGTTGGGGTGGGTCTGCAACTGCAGGCCCTGTGTGTGGTTGG
GAGACAGCTTCAGCAAAATGCGTCCGTAGGCCTCGTCCGTAATGCGCAAC
GTCAGGAGGCCCGAGTTCTCGAACTGCTGCACGCCACCATCGCGTCCCAG
ACGCACTACTAGCTTGTCCTCAATCTTCAGATGTACGCTCTCTTTGTGAA
TGTCCGACGCGATAGCTGCCTTGGCCGCTGCACTGGCGCTAGCTGCAGCA
CTGGAACCTCCAGCGGGCGCCCGCCGGTGCCAGATTGGCAATCTTCTCGC
CCCTCGTTCTTCAGCTGATCCACGAAACTATCGACGTCCTTGGACTTGCC
ACCTACTTGAGGGCATTG
BS07725.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14813-PA | 1599 | deltaCOP-RA | 795..1599 | 821..17 | 4025 | 100 | Minus |
| CG14813-PA | 1599 | deltaCOP-RA | 713..767 | 905..851 | 275 | 100 | Minus |
| CG14813-PA | 1599 | deltaCOP-RA | 765..796 | 852..821 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RB | 2167 | CG14813-RB | 889..1789 | 918..17 | 4440 | 99.7 | Minus |
| deltaCOP-RA | 2170 | CG14813-RA | 892..1792 | 918..17 | 4440 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860053..1860372 | 420..739 | 1585 | 99.7 | Plus |
| X | 23542271 | X | 1859519..1859813 | 17..311 | 1475 | 100 | Plus |
| X | 23542271 | X | 1860427..1860606 | 738..918 | 760 | 98.4 | Plus |
| X | 23542271 | X | 1859871..1859982 | 312..423 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:28 has no hits.
BS07725.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:42 Download gff for
BS07725.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 699..1599 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:55 Download gff for
BS07725.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 699..1599 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:35:35 Download gff for
BS07725.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 894..1796 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:20 Download gff for
BS07725.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 892..1794 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:20 Download gff for
BS07725.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1859517..1859813 | 13..311 | 99 | <- | Plus |
| X | 1859871..1859982 | 312..423 | 100 | <- | Plus |
| X | 1860057..1860370 | 424..737 | 100 | <- | Plus |
| X | 1860427..1860606 | 738..918 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:35:35 Download gff for
BS07725.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1753550..1753846 | 13..311 | 99 | <- | Plus |
| arm_X | 1753904..1754015 | 312..423 | 100 | <- | Plus |
| arm_X | 1754090..1754403 | 424..737 | 100 | <- | Plus |
| arm_X | 1754460..1754639 | 738..918 | 98 | | Plus |
BS07725.5prime Sequence
808 bp (771 high quality bases) assembled on 2006-01-06
> BS07725.5prime
GAAGTTATCAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGA
ATGGCAAAGTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGC
ATCGAGGGACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCA
GCACACTTACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGG
AGAAACTATATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAG
GATCTGGAGACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCA
CTCGCTCGACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCG
CATTTGACGAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCC
CAGATCAAGACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCA
GGCAGTGCGTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGA
AGGCCAAGGAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGT
CCCTCCCTGGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGG
AATTGGCAGTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACA
CCGGCATCACCTCCATCGATGTGGACACCAAATCCAAGGCGGCTGCCAGT
AAACCAGCTTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGT
CGATAGTTTCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATC
TGGCACCG
BS07725.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14813-PA | 1599 | deltaCOP-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..985 | 17..808 | 3960 | 100 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..982 | 17..808 | 3905 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 696..283 | 2070 | 100 | Minus |
| X | 23542271 | X | 1861156..1861381 | 283..58 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860513..1860624 | 808..697 | 560 | 100 | Minus |
| X | 23542271 | X | 1861446..1861486 | 59..19 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:56:17 has no hits.
BS07725.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:42 Download gff for
BS07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:56 Download gff for
BS07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:56:20 Download gff for
BS07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..987 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:43 Download gff for
BS07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 187..985 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:43 Download gff for
BS07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1860513..1860624 | 697..808 | 100 | <- | Minus |
| X | 1860686..1861098 | 284..696 | 100 | <- | Minus |
| X | 1861156..1861379 | 60..283 | 100 | <- | Minus |
| X | 1861446..1861488 | 16..59 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:56:20 Download gff for
BS07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1754546..1754657 | 697..808 | 100 | <- | Minus |
| arm_X | 1754719..1755131 | 284..696 | 100 | <- | Minus |
| arm_X | 1755189..1755412 | 60..283 | 100 | <- | Minus |
| arm_X | 1755479..1755521 | 16..59 | 97 | | Minus |
BS07725.complete Sequence
1631 bp assembled on 2008-08-14
> BS07725.complete
GAAGTTATCAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGA
ATGGCAAAGTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGC
ATCGAGGGACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCA
GCACACTTACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGG
AGAAACTATATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAG
GATCTGGAGACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCA
CTCGCTCGACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCG
CATTTGACGAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCC
CAGATCAAGACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCA
GGCAGTGCGTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGA
AGGCCAAGGAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGT
CCCTCCCTGGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGG
AATTGGCAGTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACA
CCGGCATCACCTCCATCGATGTGGACACCAAATCCAAGGCGGCTGCCAGT
AAACCAGCTTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGT
CGATAGTTTCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATC
TGGCACCGGCGGCGCCCGCTGGAGGTTCCAGTGCTGCAGCTAGCGCCAGT
GCAGCGGCCAAGGCAGCTATCGCGTCGGACATTCACAAAGAGAGCGTACA
TCTGAAGATTGAGGACAAGCTAGTAGTGCGTCTGGGACGCGATGGTGGCG
TGCAGCAGTTCGAGAACTCGGGCCTCCTGACGTTGCGCATTACGGACGAG
GCCTACGGACGCATTTTGCTGAAGCTGTCTCCCAACCACACACAGGGCCT
GCAGTTGCAGACCCACCCCAACGTGGACAAGGAGCTGTTCAAGTCGCGCA
CTACCATCGGACTAAAGAACTTGGGCAAGCCGTTTCCCCTTAACACCGAT
GTGGGTGTGCTCAAGTGGCGCTTCGTCTCGCAGGACGAGTCGGCAGTCCC
GCTGACCATTAACTGCTGGCCATCGGATAATGGAGAGGGTGGATGCGATG
TTAACATTGAGTATGAACTGGAGGCGCAGCAGCTAGAGCTGCAGGACGTG
GCCATTGTCATTCCCTTGCCAATGAATGTGCAGCCTTCGGTGGCGGAGTA
CGACGGCACCTACAACTACGATTCACGCAAGCATGTGCTCCAGTGGCACA
TTCCAATAATCGATGCCGCCAACAAGTCCGGTTCTATGGAGTTCAGCTGC
AGTGCCTCCATTCCCGGTGACTTCTTCCCCTTGCAGGTGTCCTTCGTCTC
GAAAACGCCGTATGCGGGCGTCGTGGCCCAGGATGTGGTGCAGGTGGACA
GCGAGGCGGCGGTCAAGTATTCAAGCGAGTCCATTCTGTTCGTGGAAAAG
TACGAGATCGTGTAGAAGCTTTCTAGACCAT
BS07725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 1599 | CG14813-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
| deltaCOP-RB | 1596 | CG14813-PB | 1..1596 | 17..1615 | 7915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..1792 | 17..1615 | 7995 | 100 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..1789 | 17..1615 | 7915 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 696..283 | 2070 | 100 | Minus |
| X | 23542271 | X | 1860053..1860372 | 1212..893 | 1585 | 99.7 | Minus |
| X | 23542271 | X | 1859519..1859813 | 1615..1321 | 1475 | 100 | Minus |
| X | 23542271 | X | 1861156..1861381 | 283..58 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860427..1860624 | 894..697 | 990 | 100 | Minus |
| X | 23542271 | X | 1859871..1859982 | 1320..1209 | 560 | 100 | Minus |
| X | 23542271 | X | 1861446..1861486 | 59..19 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:18 has no hits.
BS07725.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:32 Download gff for
BS07725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1796 | 9..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:06 Download gff for
BS07725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 196..1794 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:52 Download gff for
BS07725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 196..1794 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:55 Download gff for
BS07725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 194..1792 | 17..1615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:55 Download gff for
BS07725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1861156..1861379 | 60..283 | 100 | <- | Minus |
| X | 1861446..1861487 | 17..59 | 97 | | Minus |
| X | 1859519..1859813 | 1321..1615 | 100 | <- | Minus |
| X | 1859871..1859982 | 1209..1320 | 100 | <- | Minus |
| X | 1860057..1860370 | 895..1208 | 100 | <- | Minus |
| X | 1860427..1860624 | 697..894 | 100 | <- | Minus |
| X | 1860686..1861098 | 284..696 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:06 Download gff for
BS07725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1753552..1753846 | 1321..1615 | 100 | <- | Minus |
| arm_X | 1753904..1754015 | 1209..1320 | 100 | <- | Minus |
| arm_X | 1754090..1754403 | 895..1208 | 100 | <- | Minus |
| arm_X | 1754460..1754657 | 697..894 | 100 | <- | Minus |
| arm_X | 1754719..1755131 | 284..696 | 100 | <- | Minus |
| arm_X | 1755189..1755412 | 60..283 | 100 | <- | Minus |
| arm_X | 1755479..1755520 | 17..59 | 97 | | Minus |
BS07725.pep Sequence
Translation from 16 to 1614
> BS07725.pep
MVLIAAAVCTKNGKVILSRQFVEMTKARIEGLLAAFPKLMTAGKQHTYVE
TDSVRYVYQPMEKLYMLLITTKASNILEDLETLRLFSKVIPEYSHSLDEK
EIVENAFNLIFAFDEIVALGYRESVNLAQIKTFVEMDSHEEKVYQAVRQT
QERDARQKMREKAKELQRQRMEASKRGGPSLGGIGSRSGGFSADGIGSSG
VSSSSGASSANTGITSIDVDTKSKAAASKPASRNALKLGGKSKDVDSFVD
QLKNEGEKIANLAPAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIED
KLVVRLGRDGGVQQFENSGLLTLRITDEAYGRILLKLSPNHTQGLQLQTH
PNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDESAVPLTINC
WPSDNGEGGCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYN
YDSRKHVLQWHIPIIDAANKSGSMEFSCSASIPGDFFPLQVSFVSKTPYA
GVVAQDVVQVDSEAAVKYSSESILFVEKYEIV*
BS07725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-PA | 532 | CG14813-PA | 1..532 | 1..532 | 2671 | 100 | Plus |
| deltaCOP-PB | 531 | CG14813-PB | 1..531 | 1..532 | 2655 | 99.8 | Plus |
