Clone Sequence Records
BS07726.3prime Sequence
924 bp (842 high quality bases) assembled on 2006-01-06
> BS07726.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGCGGCGCGTTGACTCAGATGCTGTG
GGTGGTGGCGGCGGGCCGCGTTTGTTGAGCTCCTCCAAAAAGCCGAGCAC
AATAGTGTTCCTCTCCTCCTCCATGTGATCGAGCACCAAATAGCGCTTGT
CGTTCTTCAAAATGTCCTGAATCTCTTTGAGATGGTTTGGATTTTCCTTG
ATGAGATCGCTGCTCTTGTGAGTAATAAATTTGCACTCTTGCAGGAGTTC
CCGAAGAGAAGTCTTCGCTGTCATCGTTTTATCTTTGATGTAGTCCCGGA
ACTCGCGCTCGCCCTTGTCCGAATTGTATTTTAGGTATCGCGGATCTTCT
TTGATCAGCTTCTTAATCTCTTTCCAAGTGCTAGTAAGCTGAAGAGTGCT
AATCTCGTCGAGCATTTCGCGGAATCGCTCCCTCTTCTTCTTCATCAGAT
TGTCAATGTGCTCGTTGAATTTTCGCTCGCGATCCTCGCGATCAAGGCTT
TCTATTAGTTCCCAGCGATGATCCTTCCGCAATTGTCGCTTGACCTCCTT
CCACGTGAAGTCCGGCGTTCGCACCAGATCTGTCAGCAAAGCGGTAAAGT
GACCAATGCACTCCTCGCGCATGTGATGCTCGCGCTCCTTGTCCCGATCC
CTCAAATGACCGGCCAGGGTTCGCTGCACCTCCTTCTCTCGTTCCCTTAT
ACTCTGCTCTACCCTTAGCTTCTTCTCGCGTTCCTTCTGCTTTTGCTCAG
CCTCGTTCTCCCGTTGGCGAGCCACCTCGCTGTCGTCGCTGCCGGCTCGT
TCTTCCCTTTCTGACTCTTCACGATGTTCACCCTCCTCTGGGGTGGTATC
TCGTTTCTTGCTTTTCTCCGACTTGCTTTTTTCTCCTTTGTCTTTATCCT
TTTCCTTTGGATGACTTGTGCTCG
BS07726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31367-PA | 1194 | CG31367-RA | 328..1194 | 883..17 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3589 | CG42724-RK | 2570..3477 | 924..16 | 4475 | 99.7 | Minus |
| CG42724-RI | 4036 | CG42724-RI | 3017..3924 | 924..16 | 4475 | 99.7 | Minus |
| CG42724-RC | 3688 | CG42724-RC | 2669..3576 | 924..16 | 4475 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6362399..6362763 | 474..838 | 1825 | 100 | Plus |
| 3R | 32079331 | 3R | 6362005..6362335 | 144..474 | 1655 | 100 | Plus |
| 3R | 32079331 | 3R | 6361784..6361912 | 16..144 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 6362837..6362922 | 838..924 | 340 | 95.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:58:18 has no hits.
BS07726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:44 Download gff for
BS07726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-PA | 288..1194 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:57 Download gff for
BS07726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-PA | 288..1194 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:56 Download gff for
BS07726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RH | 677..1584 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:48 Download gff for
BS07726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RC | 2669..3576 | 16..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:48 Download gff for
BS07726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6361784..6361911 | 16..143 | 100 | <- | Plus |
| 3R | 6362005..6362334 | 144..473 | 100 | <- | Plus |
| 3R | 6362399..6362763 | 474..838 | 100 | <- | Plus |
| 3R | 6362838..6362922 | 839..924 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:56 Download gff for
BS07726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2187506..2187633 | 16..143 | 100 | <- | Plus |
| arm_3R | 2187727..2188056 | 144..473 | 100 | <- | Plus |
| arm_3R | 2188121..2188485 | 474..838 | 100 | <- | Plus |
| arm_3R | 2188560..2188644 | 839..924 | 96 | | Plus |
BS07726.5prime Sequence
873 bp (784 high quality bases) assembled on 2006-01-09
> BS07726.5prime
GAAGTTATCAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACA
CCAGGTGGTACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGT
ATGGTGGACTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACAT
TATGAAGGAGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAAC
GGGAGCGACATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAA
AAGGACAAGGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGA
CCGCGAGCACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAA
GCAAGTCGGAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAA
CATCGTGAAGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGA
GGTGGCTCGCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCG
AGAAGAAGCTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTG
CAGCGAACCCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCA
TCACATGCGCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATC
TGGTGCGAACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGG
AAGGATCATCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGA
GCGAAAATTCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGC
GATTCCGCGAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACT
TGGAAAGAGATTAAGAAGCTGAT
BS07726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31367-PA | 1194 | CG31367-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3589 | CG42724-RK | 2283..3139 | 17..873 | 4285 | 100 | Plus |
| CG42724-RI | 4036 | CG42724-RI | 2730..3586 | 17..873 | 4285 | 100 | Plus |
| CG42724-RC | 3688 | CG42724-RC | 2382..3238 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6362837..6363209 | 389..17 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 6362399..6362763 | 753..389 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 6362215..6362335 | 873..753 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 4486966..4487126 | 14..174 | 310 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:50:26 has no hits.
BS07726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:45 Download gff for
BS07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:14:59 Download gff for
BS07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:44 Download gff for
BS07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RH | 383..1246 | 8..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:39 Download gff for
BS07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RC | 2375..3238 | 8..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:39 Download gff for
BS07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6362215..6362334 | 754..873 | 100 | <- | Minus |
| 3R | 6362399..6362763 | 389..753 | 100 | <- | Minus |
| 3R | 6362838..6363216 | 8..388 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:44 Download gff for
BS07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2187937..2188056 | 754..873 | 100 | <- | Minus |
| arm_3R | 2188121..2188485 | 389..753 | 100 | <- | Minus |
| arm_3R | 2188560..2188938 | 8..388 | 98 | | Minus |
BS07726.complete Sequence
1226 bp (1226 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635964
> BS07726.complete
GAAGTTATCAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACA
CCAGGTGGTACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGT
ATGGTGGACTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACAT
TATGAAGGAGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAAC
GGGAGCGACATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAA
AAGGACAAGGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGA
CCGCGAGCACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAA
GCAAGTCGGAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAA
CATCGTGAAGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGA
GGTGGCTCGCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCG
AGAAGAAGCTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTG
CAGCGAACCCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCA
TCACATGCGCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATC
TGGTGCGAACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGG
AAGGATCATCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGA
GCGAAAATTCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGC
GATTCCGCGAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACT
TGGAAAGAGATTAAGAAGCTGATCAAAGAAGATCCGCGATACCTAAAATA
CAATTCGGACAAGGGCGAGCGCGAGTTCCGGGACTACATCAAAGATAAAA
CGATGACAGCGAAGACTTCTCTTCGGGAACTCCTGCAAGAGTGCAAATTT
ATTACTCACAAGAGCAGCGATCTCATCAAGGAAAATCCAAACCATCTCAA
AGAGATTCAGGACATTTTGAAGAACGACAAGCGCTATTTGGTGCTCGATC
ACATGGAGGAGGAGAGGAACACTATTGTGCTCGGCTTTTTGGAGGAGCTC
AACAAACGCGGCCCGCCGCCACCACCCACAGCATCTGAGTCAACGCGCCG
CAACAAGTAGAAGCTTTCTAGACCAT
BS07726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3372 | CG42724-PK | 2179..3372 | 17..1210 | 5970 | 100 | Plus |
| CG42724-RC | 3372 | CG42724-PC | 2179..3372 | 17..1210 | 5970 | 100 | Plus |
| Fip1-RA | 2106 | CG1078-PA | 1609..1769 | 14..174 | 310 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3589 | CG42724-RK | 2283..3477 | 17..1211 | 5975 | 100 | Plus |
| CG42724-RI | 4036 | CG42724-RI | 2730..3924 | 17..1211 | 5975 | 100 | Plus |
| CG42724-RC | 3688 | CG42724-RC | 2382..3576 | 17..1211 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6362837..6363209 | 389..17 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 6362399..6362763 | 753..389 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 6362005..6362335 | 1083..753 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 6361784..6361912 | 1211..1083 | 645 | 100 | Minus |
| 3R | 32079331 | 3R | 4486966..4487126 | 14..174 | 310 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:44 has no hits.
BS07726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:54 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-RA | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:07 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-RA | 912..2113 | 8..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:43 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RH | 390..1583 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:55 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-RA | 912..2113 | 8..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:11 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RC | 2382..3575 | 17..1210 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:11 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6361785..6361911 | 1084..1210 | 100 | <- | Minus |
| 3R | 6362005..6362334 | 754..1083 | 100 | <- | Minus |
| 3R | 6362399..6362763 | 389..753 | 100 | <- | Minus |
| 3R | 6362838..6363209 | 17..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:43 Download gff for
BS07726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2187507..2187633 | 1084..1210 | 100 | <- | Minus |
| arm_3R | 2187727..2188056 | 754..1083 | 100 | <- | Minus |
| arm_3R | 2188121..2188485 | 389..753 | 100 | <- | Minus |
| arm_3R | 2188560..2188931 | 17..388 | 100 | | Minus |
BS07726.pep Sequence
Translation from 16 to 1209
> BS07726.pep
MLRERHDIERHTRWYDIKKKFESDPRYRMVDSMYREEYFEDYLHIMKEEK
RKEREMREQRERERHRELKSDRKEKDKEKDKGRKDRGRSRSKDKDREHKS
SKEKDKDKEEKSKSEKSKKRDTTPEEGEHREESEREERAGSDDSEVARQR
ENEAEQKQKEREKKLRVEQSIREREKEVQRTLAGHLRDRDKEREHHMREE
CIGHFTALLTDLVRTPDFTWKEVKRQLRKDHRWELIESLDREDRERKFNE
HIDNLMKKKRERFREMLDEISTLQLTSTWKEIKKLIKEDPRYLKYNSDKG
EREFRDYIKDKTMTAKTSLRELLQECKFITHKSSDLIKENPNHLKEIQDI
LKNDKRYLVLDHMEEERNTIVLGFLEELNKRGPPPPPTASESTRRNK*
BS07726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-PK | 1123 | CG42724-PK | 727..1123 | 1..397 | 2078 | 100 | Plus |
| CG42724-PC | 1123 | CG42724-PC | 727..1123 | 1..397 | 2078 | 100 | Plus |
| Fip1-PA | 701 | CG1078-PA | 538..697 | 1..164 | 441 | 52.7 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1365..1653 | 47..345 | 262 | 28.3 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1365..1653 | 47..345 | 262 | 28.3 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1349..1683 | 18..349 | 254 | 24.9 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1396..1670 | 2..282 | 217 | 26 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1315..1635 | 43..352 | 206 | 26.3 | Plus |
