Clone Sequence Records
BS07729.3prime Sequence
858 bp (827 high quality bases) assembled on 2006-01-06
> BS07729.3prime
ATGGTCTAGAAAGCTTTCAGGCGAAACTTACGTCATCCGTCTTGTAGTAA
AGGTAGTTCCAGTACCAAAAGTTTTTATCCGCCTTGGCTGGGATCAAGTG
ATGCTCCGGTATGAAGGGAAACATGCGACCGCGACCGATTTCGTCCCTGG
AATCGCCGGCGGTGACGTTCAGGTTCTCCATGCATCGCCCGATTTCGATG
TCCTCGTTGACCACCGTGCCCGGCAGGCACATCTTGGGATTCGGAATGCC
CTCGACCACGAAGCGACGCAGGGCCTCCCGACTGAGTATGTAGCCCGCTC
CGCCGGACATGTAGCCCTGCTTCACGAAGGGCTTGAACTTGAATCCGAAG
TGCACGGGTGTTTCGGGATTGTACGGATAGAGCATATACCGCATGTTCTC
GATCACGGCGTAAGTGTCGTCATCGGCCTTGTAGAAGAAGTCGGCGTCGT
TATAGTGGTGATGATAGACGTACTTGAACGCCTCCTTGACCTTGGCCCAT
AGATTCTCCCGTCCCTCGCCCACGTCGAGCTTCACGGTGGGCAGCTCCTC
ATCCGCGCCGGAACTCATGAAGAGCAAGATGTTGCAGCGCTTGCCCCAGG
TTCGCTTCACATGGCGAGCCTTCTTCTTGTGGTTTGTGGGATTGGTCATC
ACCCAGCAGAGGATGCGTACCTCCTTCTTCAACTGCTCGGCCACGCTGAC
GTTGTCGTTGCGATGATCATGCTTCAACCCGCTCTGCTCCGGAGCCAATT
GACCACCGGTGGCCACCTGGGAATCGCTGAACCGTCTGCTGAGATACGGA
TAGAGACTCTCGTGCGGCGCAATGCTGGAGAAGATTTGAGCCAGGCAGTA
GCCGACCA
BS07729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PA | 933 | CG8708-RA | 92..933 | 858..17 | 4210 | 100 | Minus |
| CG8708-PB | 1353 | CG8708-RB | 92..919 | 858..31 | 4140 | 100 | Minus |
| CG9520-PB | 1167 | CG9520-RB | 624..713 | 341..252 | 150 | 86.6 | Minus |
| CG9520-PC | 1167 | CG9520-RC | 624..713 | 341..252 | 150 | 86.6 | Minus |
| CG9520-PA | 1167 | CG9520-RA | 624..713 | 341..252 | 150 | 86.6 | Minus |
| CG9520-PB | 1167 | CG9520-RB | 338..385 | 627..580 | 140 | 91.6 | Minus |
| CG9520-PC | 1167 | CG9520-RC | 338..385 | 627..580 | 140 | 91.6 | Minus |
| CG9520-PA | 1167 | CG9520-RA | 338..385 | 627..580 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 440..1267 | 858..31 | 4140 | 100 | Minus |
| CG8708-RC | 1626 | CG8708-RC | 204..1031 | 858..31 | 4140 | 100 | Minus |
| CG8708-RB | 1674 | CG8708-RB | 252..1079 | 858..31 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160040..8160881 | 17..858 | 4210 | 100 | Plus |
| 2L | 23513712 | 2L | 8944428..8944862 | 227..661 | 705 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:08:49 has no hits.
BS07729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:50 Download gff for
BS07729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PA | 93..933 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:07 Download gff for
BS07729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PA | 93..933 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:58 Download gff for
BS07729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 253..1085 | 22..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:35 Download gff for
BS07729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 253..1085 | 22..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:35 Download gff for
BS07729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160036..8160880 | 14..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:58 Download gff for
BS07729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047541..4048385 | 14..857 | 99 | | Plus |
BS07729.5prime Sequence
922 bp (787 high quality bases) assembled on 2006-01-06
> BS07729.5prime
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGGCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAAGCGGATAAAAACTTTTT
GGTACTGGAACTACCTTTACTA
BS07729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PA | 933 | CG8708-RA | 1..883 | 17..899 | 4365 | 99.7 | Plus |
| CG8708-PB | 1353 | CG8708-RB | 1..883 | 17..899 | 4365 | 99.7 | Plus |
| CG9520-PB | 1167 | CG9520-RB | 624..713 | 625..714 | 150 | 86.6 | Plus |
| CG9520-PC | 1167 | CG9520-RC | 624..713 | 625..714 | 150 | 86.6 | Plus |
| CG9520-PA | 1167 | CG9520-RA | 624..713 | 625..714 | 150 | 86.6 | Plus |
| CG9520-PB | 1167 | CG9520-RB | 338..385 | 339..386 | 140 | 91.6 | Plus |
| CG9520-PC | 1167 | CG9520-RC | 338..385 | 339..386 | 140 | 91.6 | Plus |
| CG9520-PA | 1167 | CG9520-RA | 338..385 | 339..386 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1253 | 17..922 | 4475 | 99.7 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1065 | 17..922 | 4475 | 99.7 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1017 | 59..922 | 4265 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160068..8160931 | 922..58 | 4245 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:06:25 has no hits.
BS07729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:50 Download gff for
BS07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PA | 1..904 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:09 Download gff for
BS07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PB | 1..904 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:11 Download gff for
BS07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 150..1064 | 7..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:21 Download gff for
BS07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 150..1064 | 7..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:21 Download gff for
BS07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160069..8160929 | 60..921 | 99 | <- | Minus |
| 2R | 8161033..8161086 | 7..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:11 Download gff for
BS07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047574..4048434 | 60..921 | 99 | <- | Minus |
| arm_2R | 4048538..4048591 | 7..59 | 92 | | Minus |
BS07729.complete Sequence
965 bp (965 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635965
> BS07729.complete
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTG
GTACTGGAACTACCTTTACTACAAGACGGATGACGTAAGTTTCGCCTGAA
AGCTTTCTAGACCAT
BS07729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1353 | CG8708-PD | 1..919 | 17..935 | 4595 | 100 | Plus |
| CG8708-RB | 1353 | CG8708-PB | 1..919 | 17..935 | 4595 | 100 | Plus |
| CG8708-RC | 1335 | CG8708-PC | 25..901 | 59..935 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1267 | 17..935 | 4595 | 100 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1079 | 17..935 | 4595 | 100 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1031 | 59..935 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160040..8160931 | 949..58 | 4460 | 100 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:59:23 has no hits.
BS07729.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:15 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RA | 1..933 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:00 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RA | 145..1092 | 7..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:56 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 161..1085 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:16 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RA | 145..1092 | 7..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:38 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 161..1085 | 17..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:38 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160041..8160929 | 60..948 | 100 | <- | Minus |
| 2R | 8161033..8161075 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:56 Download gff for
BS07729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047546..4048434 | 60..948 | 100 | <- | Minus |
| arm_2R | 4048538..4048580 | 17..59 | 100 | | Minus |
BS07729.pep Sequence
Translation from 16 to 948
> BS07729.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDVSFA*
BS07729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PD | 450 | CG8708-PD | 1..306 | 1..306 | 1648 | 100 | Plus |
| CG8708-PB | 450 | CG8708-PB | 1..306 | 1..306 | 1648 | 100 | Plus |
| CG8708-PC | 444 | CG8708-PC | 1..300 | 7..306 | 1591 | 97.7 | Plus |
| C1GalTA-PA | 388 | CG9520-PA | 1..311 | 1..306 | 1066 | 62.2 | Plus |
| C1GalTA-PC | 388 | CG9520-PC | 1..311 | 1..306 | 1066 | 62.2 | Plus |
