Clone BS07731 Report

Search the DGRC for BS07731

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptSpn47C-RA
Protein status:BS07731.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07731.3prime Sequence

867 bp (855 high quality bases) assembled on 2006-01-06

> BS07731.3prime
ATGGTCTAGAAAGCTTTTAGGGCTTAACGAAATGGCCAACGAAGTAAACG
TTTTTCCTGTCGCGTATGGCAAAAACAAAGGGGCGGTCGGCCTTGAAGAA
CTTGCGATCGGGATTCTTCTTAAGGACTTCGGGTTGGACCTCTGCTTCTG
GTGCTACTTCGCACCCAAATTCAGTAACATTTAAAAACACTTTGTGTCTA
GCCTCCGAAATCTTTTGTGGTGTTTTCATTTCGAAAAGATCGCTCAAATC
CGCTTGTCCAGCATCAAAAACACTATTAATACCCATCTTTTGTAGTGGAA
CCTTAAGATCAACAGTGCACTCGATCCTGAATTTTGGAATGGTTACATCC
ACTTCCTTCATTAGACTTTTGGCGGCTACCTCGTTCATGTCCAGTTGACC
AAGTTTTTCCTCCAATTCGGGCAAGCCATCAATAGCAGTTGGTAAGATAA
TCATCATGGTCAAATTGGATCTTTCAAACGGCAATTGCAGGATCTGTGAC
TTTAGTTTCTTGGACTCCCCATAGCGGAACTGACCAATTTGCCTCATCAT
TGAAACTTCCATTCGCTGCCGAGGATTTATCCAGAAGTCATCGATCTGGG
TAAGTTGCTGGGGGAATATCTTGTTCCATTTGGCTCGGAAGAACAGTGAG
TTTACAAGGATTACACTGGAATCGGAATTGAAAACCTCGGGCGTAAACAG
ATTTCGTACAGTGTAAAACGTGTGTTTTTCTAGCCACTTGTTAACTTTTT
TGACAGAATCTTCCGGGTTCAAGTAGTTAAGAGAATAAGCCTCAGCATTG
AAGAACTCCAAGGCCATGTCATTAAAGTCAGTCCGGATTTTCTCCTCTTC
ATTGACGTACAATCGTG

BS07731.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7722-PA 1149 CG7722-RA 299..1149 867..17 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 3114 CG7722-RC 375..1225 867..17 4255 100 Minus
Spn47C-RB 1351 CG7722-RB 375..1225 867..17 4255 100 Minus
Spn47C-RA 1356 CG7722-RA 380..1230 867..17 4255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940710..10941290 287..867 2905 100 Plus
2R 25286936 2R 10940507..10940654 142..289 740 100 Plus
2R 25286936 2R 10940314..10940441 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:22:12 has no hits.

BS07731.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:54 Download gff for BS07731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 299..1149 17..867 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:13 Download gff for BS07731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 299..1149 17..867 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:19 Download gff for BS07731.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 377..1231 13..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:21 Download gff for BS07731.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 380..1234 13..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:21 Download gff for BS07731.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10940310..10940438 13..141 98 <- Plus
2R 10940507..10940651 142..286 100 <- Plus
2R 10940710..10941290 287..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:19 Download gff for BS07731.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6827815..6827943 13..141 98 <- Plus
arm_2R 6828012..6828156 142..286 100 <- Plus
arm_2R 6828215..6828795 287..867 100   Plus

BS07731.5prime Sequence

771 bp (770 high quality bases) assembled on 2006-01-06

> BS07731.5prime
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGA

BS07731.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7722-PA 1149 CG7722-RA 1..755 17..771 3775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 3114 CG7722-RC 77..831 17..771 3775 100 Plus
Spn47C-RB 1351 CG7722-RB 77..831 17..771 3775 100 Plus
Spn47C-RA 1356 CG7722-RA 82..836 17..771 3775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940834..10941588 771..17 3775 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:04:47 has no hits.

BS07731.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:55 Download gff for BS07731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:14 Download gff for BS07731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7722-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:00:52 Download gff for BS07731.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 79..832 17..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:45 Download gff for BS07731.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 82..835 17..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:45 Download gff for BS07731.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10940835..10941588 17..770 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:00:52 Download gff for BS07731.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6828340..6829093 17..770 100   Minus

BS07731.complete Sequence

1181 bp (1181 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635966

> BS07731.complete
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACG
AGGTAGCCGCCAAAAGTCTAATGAAGGAAGTGGATGTAACCATTCCAAAA
TTCAGGATCGAGTGCACTGTTGATCTTAAGGTTCCACTACAAAAGATGGG
TATTAATAGTGTTTTTGATGCTGGACAAGCGGATTTGAGCGATCTTTTCG
AAATGAAAACACCACAAAAGATTTCGGAGGCTAGACACAAAGTGTTTTTA
AATGTTACTGAATTTGGGTGCGAAGTAGCACCAGAAGCAGAGGTCCAACC
CGAAGTCCTTAAGAAGAATCCCGATCGCAAGTTCTTCAAGGCCGACCGCC
CCTTTGTTTTTGCCATACGCGACAGGAAAAACGTTTACTTCGTTGGCCAT
TTCGTTAAGCCCTAAAAGCTTTCTAGACCAT

BS07731.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 1149 CG7722-PC 1..1149 17..1165 5745 100 Plus
Spn47C-RB 1149 CG7722-PB 1..1149 17..1165 5745 100 Plus
Spn47C-RA 1149 CG7722-PA 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-RC 3114 CG7722-RC 77..1225 17..1165 5745 100 Plus
Spn47C-RB 1351 CG7722-RB 77..1225 17..1165 5745 100 Plus
Spn47C-RA 1356 CG7722-RA 82..1230 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10940710..10941588 895..17 4395 100 Minus
2R 25286936 2R 10940507..10940654 1040..893 740 100 Minus
2R 25286936 2R 10940314..10940441 1165..1038 640 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:53:54 has no hits.

BS07731.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:14 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:11 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 79..1231 17..1169 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:21 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 79..1225 17..1163 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:14 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
CG7722-RA 79..1231 17..1169 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:53 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn47C-RA 82..1228 17..1163 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:53 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10940316..10940438 1041..1163 100 <- Minus
2R 10940507..10940651 896..1040 100 <- Minus
2R 10940710..10941588 17..895 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:21 Download gff for BS07731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6827821..6827943 1041..1163 100 <- Minus
arm_2R 6828012..6828156 896..1040 100 <- Minus
arm_2R 6828215..6829093 17..895 100   Minus

BS07731.pep Sequence

Translation from 16 to 1164

> BS07731.pep
MASGGTTAPSLSASPIVFARNLFRALNDEVPPVNMMVSPAGARSAMTLVF
MGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDECSCAKKGVALRLVT
RLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDSVKKVNKWLEKHTF
YTVRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQLTQIDDFWINPRQ
RMEVSMMRQIGQFRYGESKKLKSQILQLPFERSNLTMMIILPTAIDGLPE
LEEKLGQLDMNEVAAKSLMKEVDVTIPKFRIECTVDLKVPLQKMGINSVF
DAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEVAPEAEVQPEVLKK
NPDRKFFKADRPFVFAIRDRKNVYFVGHFVKP*

BS07731.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Spn47C-PC 382 CG7722-PC 1..382 1..382 1959 100 Plus
Spn47C-PB 382 CG7722-PB 1..382 1..382 1959 100 Plus
Spn47C-PA 382 CG7722-PA 1..382 1..382 1959 100 Plus
Spn42Dc-PB 403 CG9455-PB 11..380 18..382 702 37.2 Plus
Spn42Dc-PA 403 CG9455-PA 11..380 18..382 702 37.2 Plus