Clone Sequence Records
BS07731.3prime Sequence
867 bp (855 high quality bases) assembled on 2006-01-06
> BS07731.3prime
ATGGTCTAGAAAGCTTTTAGGGCTTAACGAAATGGCCAACGAAGTAAACG
TTTTTCCTGTCGCGTATGGCAAAAACAAAGGGGCGGTCGGCCTTGAAGAA
CTTGCGATCGGGATTCTTCTTAAGGACTTCGGGTTGGACCTCTGCTTCTG
GTGCTACTTCGCACCCAAATTCAGTAACATTTAAAAACACTTTGTGTCTA
GCCTCCGAAATCTTTTGTGGTGTTTTCATTTCGAAAAGATCGCTCAAATC
CGCTTGTCCAGCATCAAAAACACTATTAATACCCATCTTTTGTAGTGGAA
CCTTAAGATCAACAGTGCACTCGATCCTGAATTTTGGAATGGTTACATCC
ACTTCCTTCATTAGACTTTTGGCGGCTACCTCGTTCATGTCCAGTTGACC
AAGTTTTTCCTCCAATTCGGGCAAGCCATCAATAGCAGTTGGTAAGATAA
TCATCATGGTCAAATTGGATCTTTCAAACGGCAATTGCAGGATCTGTGAC
TTTAGTTTCTTGGACTCCCCATAGCGGAACTGACCAATTTGCCTCATCAT
TGAAACTTCCATTCGCTGCCGAGGATTTATCCAGAAGTCATCGATCTGGG
TAAGTTGCTGGGGGAATATCTTGTTCCATTTGGCTCGGAAGAACAGTGAG
TTTACAAGGATTACACTGGAATCGGAATTGAAAACCTCGGGCGTAAACAG
ATTTCGTACAGTGTAAAACGTGTGTTTTTCTAGCCACTTGTTAACTTTTT
TGACAGAATCTTCCGGGTTCAAGTAGTTAAGAGAATAAGCCTCAGCATTG
AAGAACTCCAAGGCCATGTCATTAAAGTCAGTCCGGATTTTCTCCTCTTC
ATTGACGTACAATCGTG
BS07731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7722-PA | 1149 | CG7722-RA | 299..1149 | 867..17 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 3114 | CG7722-RC | 375..1225 | 867..17 | 4255 | 100 | Minus |
Spn47C-RB | 1351 | CG7722-RB | 375..1225 | 867..17 | 4255 | 100 | Minus |
Spn47C-RA | 1356 | CG7722-RA | 380..1230 | 867..17 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10940710..10941290 | 287..867 | 2905 | 100 | Plus |
2R | 25286936 | 2R | 10940507..10940654 | 142..289 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10940314..10940441 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:22:12 has no hits.
BS07731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:54 Download gff for
BS07731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 299..1149 | 17..867 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:13 Download gff for
BS07731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 299..1149 | 17..867 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:19 Download gff for
BS07731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 377..1231 | 13..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:21 Download gff for
BS07731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 380..1234 | 13..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:21 Download gff for
BS07731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10940310..10940438 | 13..141 | 98 | <- | Plus |
2R | 10940507..10940651 | 142..286 | 100 | <- | Plus |
2R | 10940710..10941290 | 287..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:19 Download gff for
BS07731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6827815..6827943 | 13..141 | 98 | <- | Plus |
arm_2R | 6828012..6828156 | 142..286 | 100 | <- | Plus |
arm_2R | 6828215..6828795 | 287..867 | 100 | | Plus |
BS07731.5prime Sequence
771 bp (770 high quality bases) assembled on 2006-01-06
> BS07731.5prime
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGA
BS07731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7722-PA | 1149 | CG7722-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 3114 | CG7722-RC | 77..831 | 17..771 | 3775 | 100 | Plus |
Spn47C-RB | 1351 | CG7722-RB | 77..831 | 17..771 | 3775 | 100 | Plus |
Spn47C-RA | 1356 | CG7722-RA | 82..836 | 17..771 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10940834..10941588 | 771..17 | 3775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:04:47 has no hits.
BS07731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:55 Download gff for
BS07731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:14 Download gff for
BS07731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-PA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:00:52 Download gff for
BS07731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 79..832 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:45 Download gff for
BS07731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 82..835 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:45 Download gff for
BS07731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10940835..10941588 | 17..770 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:00:52 Download gff for
BS07731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6828340..6829093 | 17..770 | 100 | | Minus |
BS07731.complete Sequence
1181 bp (1181 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635966
> BS07731.complete
GAAGTTATCAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGA
GTGCCAGTCCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGAT
GAAGTTCCGCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGC
CATGACCTTGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGC
GCTCCAAATTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAA
CATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC
GCTGCGATTGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGA
CTGACTTTAATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCT
CTTAACTACTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCT
AGAAAAACACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTT
TCAATTCCGATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCC
AAATGGAACAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTG
GATAAATCCTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTC
AGTTCCGCTATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTG
CCGTTTGAAAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTAT
TGATGGCTTGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACG
AGGTAGCCGCCAAAAGTCTAATGAAGGAAGTGGATGTAACCATTCCAAAA
TTCAGGATCGAGTGCACTGTTGATCTTAAGGTTCCACTACAAAAGATGGG
TATTAATAGTGTTTTTGATGCTGGACAAGCGGATTTGAGCGATCTTTTCG
AAATGAAAACACCACAAAAGATTTCGGAGGCTAGACACAAAGTGTTTTTA
AATGTTACTGAATTTGGGTGCGAAGTAGCACCAGAAGCAGAGGTCCAACC
CGAAGTCCTTAAGAAGAATCCCGATCGCAAGTTCTTCAAGGCCGACCGCC
CCTTTGTTTTTGCCATACGCGACAGGAAAAACGTTTACTTCGTTGGCCAT
TTCGTTAAGCCCTAAAAGCTTTCTAGACCAT
BS07731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 1149 | CG7722-PC | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Spn47C-RB | 1149 | CG7722-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Spn47C-RA | 1149 | CG7722-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-RC | 3114 | CG7722-RC | 77..1225 | 17..1165 | 5745 | 100 | Plus |
Spn47C-RB | 1351 | CG7722-RB | 77..1225 | 17..1165 | 5745 | 100 | Plus |
Spn47C-RA | 1356 | CG7722-RA | 82..1230 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10940710..10941588 | 895..17 | 4395 | 100 | Minus |
2R | 25286936 | 2R | 10940507..10940654 | 1040..893 | 740 | 100 | Minus |
2R | 25286936 | 2R | 10940314..10940441 | 1165..1038 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:53:54 has no hits.
BS07731.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:14 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:11 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-RA | 79..1231 | 17..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:21 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 79..1225 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:14 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7722-RA | 79..1231 | 17..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:53 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn47C-RA | 82..1228 | 17..1163 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:53 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10940316..10940438 | 1041..1163 | 100 | <- | Minus |
2R | 10940507..10940651 | 896..1040 | 100 | <- | Minus |
2R | 10940710..10941588 | 17..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:21 Download gff for
BS07731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6827821..6827943 | 1041..1163 | 100 | <- | Minus |
arm_2R | 6828012..6828156 | 896..1040 | 100 | <- | Minus |
arm_2R | 6828215..6829093 | 17..895 | 100 | | Minus |
BS07731.pep Sequence
Translation from 16 to 1164
> BS07731.pep
MASGGTTAPSLSASPIVFARNLFRALNDEVPPVNMMVSPAGARSAMTLVF
MGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDECSCAKKGVALRLVT
RLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDSVKKVNKWLEKHTF
YTVRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQLTQIDDFWINPRQ
RMEVSMMRQIGQFRYGESKKLKSQILQLPFERSNLTMMIILPTAIDGLPE
LEEKLGQLDMNEVAAKSLMKEVDVTIPKFRIECTVDLKVPLQKMGINSVF
DAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEVAPEAEVQPEVLKK
NPDRKFFKADRPFVFAIRDRKNVYFVGHFVKP*
BS07731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn47C-PC | 382 | CG7722-PC | 1..382 | 1..382 | 1959 | 100 | Plus |
Spn47C-PB | 382 | CG7722-PB | 1..382 | 1..382 | 1959 | 100 | Plus |
Spn47C-PA | 382 | CG7722-PA | 1..382 | 1..382 | 1959 | 100 | Plus |
Spn42Dc-PB | 403 | CG9455-PB | 11..380 | 18..382 | 702 | 37.2 | Plus |
Spn42Dc-PA | 403 | CG9455-PA | 11..380 | 18..382 | 702 | 37.2 | Plus |