Clone Sequence Records
BS07732.3prime Sequence
767 bp (755 high quality bases) assembled on 2006-01-06
> BS07732.3prime
ATGGTCTAGAAAGCTTTTAGATCTGCAGAGTCTGCTGCTCCGGCTGAACA
TTAATGTAGTTATCCTGCACGTCCTTGATCATGAAGTCCACCAGGTTGGA
CAGGTCGTACTTGTGCTGCCAGTGCCAGTCGCGCCGCGCATCGGAGTCAT
CGAATACCTGCGGCCAGGCGTCTGCGATCAACTGGCGGCTATCTGGCTTG
TAGGTCACGTGCAGATTGGGCACGTGCTTGCCCAGCTGGGCGAACAGCTC
CTCGGGAGTGAAGGACATGGCGGTCACGTTGTAGACGCGGCGCTTCAGCT
GTTCGTTGGGAGCACGCATGAACTCGAGGAGAGCCCGCAAACAATCTTCA
ATGTACATCATGGGCAGTCTTGTGTCAGGACGCAGGTAGCAGGTGTACTT
TCCATTGCGCAGCGCTTCATGGAACACGGCCACAGCGTAATCTGTGGTGC
CGCCGCCCGGCGGATCACTGGAAATCACTCCTGGGAAGCGCAGGCATCTG
AAGTCCAGTCCAAACTTGTGGTAGTAGTATTCGCCAATCAGCTCGGCGTG
CACCTTGGAAACGCCGTAAATGGTGCGCGGCCGTTGGATCGTAACATTCG
GCGTGGGATTGCGAGGACTGTCGGGACCGAAGGCTCCGATTGTGCTTGGT
ACGAAGATGCGGAGCTTATACTGCTTCGCCAGCTCGATGACGTTGTGGAC
ACCCTCGATGTTGACCCTCACAGCCAGTGGAACATTTTGCTCTCCCACCG
CACTCAGCAGGGCCGAG
BS07732.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-PA | 1104 | CG5955-RA | 354..1104 | 767..17 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1314 | CG5955-RA | 422..1172 | 767..17 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20469131..20469450 | 336..17 | 1600 | 100 | Minus |
3L | 28110227 | 3L | 20468312..20468460 | 590..442 | 745 | 100 | Minus |
3L | 28110227 | 3L | 20468125..20468253 | 718..590 | 645 | 100 | Minus |
3L | 28110227 | 3L | 20468964..20469072 | 443..335 | 545 | 100 | Minus |
3L | 28110227 | 3L | 20467918..20467969 | 767..716 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:58:49 has no hits.
BS07732.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:56 Download gff for
BS07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 354..1104 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:16 Download gff for
BS07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 354..1104 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:08 Download gff for
BS07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 422..1172 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:19 Download gff for
BS07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 422..1172 | 17..767 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:19 Download gff for
BS07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20467918..20467968 | 717..767 | 100 | -> | Minus |
3L | 20468127..20468253 | 590..716 | 100 | -> | Minus |
3L | 20468313..20468460 | 442..589 | 100 | -> | Minus |
3L | 20468966..20469071 | 336..441 | 100 | -> | Minus |
3L | 20469132..20469450 | 17..335 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:08 Download gff for
BS07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20461018..20461068 | 717..767 | 100 | -> | Minus |
arm_3L | 20461227..20461353 | 590..716 | 100 | -> | Minus |
arm_3L | 20461413..20461560 | 442..589 | 100 | -> | Minus |
arm_3L | 20462066..20462171 | 336..441 | 100 | -> | Minus |
arm_3L | 20462232..20462550 | 17..335 | 100 | | Minus |
BS07732.5prime Sequence
866 bp (784 high quality bases) assembled on 2006-01-06
> BS07732.5prime
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCG
BS07732.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-PA | 1104 | CG5955-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1314 | CG5955-RA | 69..918 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20467716..20467969 | 168..421 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 20467012..20467167 | 17..172 | 780 | 100 | Plus |
3L | 28110227 | 3L | 20468312..20468460 | 547..695 | 745 | 100 | Plus |
3L | 28110227 | 3L | 20468125..20468253 | 419..547 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20468964..20469072 | 694..802 | 545 | 100 | Plus |
3L | 28110227 | 3L | 20469131..20469196 | 801..866 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:18:31 has no hits.
BS07732.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:57 Download gff for
BS07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:17 Download gff for
BS07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:41 Download gff for
BS07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 62..918 | 8..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:33 Download gff for
BS07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 62..918 | 8..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:33 Download gff for
BS07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20467005..20467165 | 8..170 | 97 | -> | Plus |
3L | 20467719..20467968 | 171..420 | 100 | -> | Plus |
3L | 20468127..20468253 | 421..547 | 100 | -> | Plus |
3L | 20468313..20468460 | 548..695 | 100 | -> | Plus |
3L | 20468966..20469071 | 696..801 | 100 | -> | Plus |
3L | 20469132..20469196 | 802..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:41 Download gff for
BS07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20460105..20460265 | 8..170 | 97 | -> | Plus |
arm_3L | 20460819..20461068 | 171..420 | 100 | -> | Plus |
arm_3L | 20461227..20461353 | 421..547 | 100 | -> | Plus |
arm_3L | 20461413..20461560 | 548..695 | 100 | -> | Plus |
arm_3L | 20462066..20462171 | 696..801 | 100 | -> | Plus |
arm_3L | 20462232..20462296 | 802..866 | 100 | | Plus |
BS07732.complete Sequence
1136 bp (1136 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638806
> BS07732.complete
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCGCCATGTCCTTCACTCCCGAGGAGCTGTTCGCCCA
GCTGGGCAAGCACGTGCCCAATCTGCACGTGACCTACAAGCCAGATAGCC
GCCAGTTGATCGCAGACGCCTGGCCGCAGGTATTCGATGACTCCGATGCG
CGGCGCGACTGGCACTGGCAGCACAAGTACGACCTGTCCAACCTGGTGGA
CTTCATGATCAAGGACGTGCAGGATAACTACATTAATGTTCAGCCGGAGC
AGCAGACTCTGCAGATCTAAAAGCTTTCTAGACCAT
BS07732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1104 | CG5955-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-RA | 1314 | CG5955-RA | 69..1172 | 17..1120 | 5520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20469131..20469450 | 801..1120 | 1600 | 100 | Plus |
3L | 28110227 | 3L | 20467716..20467969 | 168..421 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 20467012..20467167 | 17..172 | 780 | 100 | Plus |
3L | 28110227 | 3L | 20468312..20468460 | 547..695 | 745 | 100 | Plus |
3L | 28110227 | 3L | 20468125..20468253 | 419..547 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20468964..20469072 | 694..802 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:33 has no hits.
BS07732.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:29 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 1..1104 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:19 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 58..1168 | 8..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:45 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 75..1170 | 23..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:30 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 58..1168 | 8..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:12 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5955-RA | 75..1170 | 23..1118 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:12 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20468313..20468460 | 548..695 | 100 | -> | Plus |
3L | 20468966..20469071 | 696..801 | 100 | -> | Plus |
3L | 20469132..20469448 | 802..1118 | 100 | | Plus |
3L | 20467719..20467968 | 171..420 | 100 | -> | Plus |
3L | 20468127..20468253 | 421..547 | 100 | -> | Plus |
3L | 20467018..20467165 | 23..170 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:45 Download gff for
BS07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20461227..20461353 | 421..547 | 100 | -> | Plus |
arm_3L | 20461413..20461560 | 548..695 | 100 | -> | Plus |
arm_3L | 20462066..20462171 | 696..801 | 100 | -> | Plus |
arm_3L | 20460118..20460265 | 23..170 | 100 | -> | Plus |
arm_3L | 20460819..20461068 | 171..420 | 100 | -> | Plus |
arm_3L | 20462232..20462548 | 802..1118 | 100 | | Plus |
BS07732.pep Sequence
Translation from 16 to 1119
> BS07732.pep
MFRKCLASLALAPVASPIPLPRITPIASQLVQRRAFHQVPRESRPPKILI
TGGLGQLGIECAKLLRTQYGSQNVILSDIIKPSQSVLENGPYIFADILDF
KGLQKIVVDHRIDWLIHFSALLSAVGEQNVPLAVRVNIEGVHNVIELAKQ
YKLRIFVPSTIGAFGPDSPRNPTPNVTIQRPRTIYGVSKVHAELIGEYYY
HKFGLDFRCLRFPGVISSDPPGGGTTDYAVAVFHEALRNGKYTCYLRPDT
RLPMMYIEDCLRALLEFMRAPNEQLKRRVYNVTAMSFTPEELFAQLGKHV
PNLHVTYKPDSRQLIADAWPQVFDDSDARRDWHWQHKYDLSNLVDFMIKD
VQDNYINVQPEQQTLQI*
BS07732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5955-PA | 367 | CG5955-PA | 1..367 | 1..367 | 1934 | 100 | Plus |