Clone BS07732 Report

Search the DGRC for BS07732

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG5955-RA
Protein status:BS07732.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07732.3prime Sequence

767 bp (755 high quality bases) assembled on 2006-01-06

> BS07732.3prime
ATGGTCTAGAAAGCTTTTAGATCTGCAGAGTCTGCTGCTCCGGCTGAACA
TTAATGTAGTTATCCTGCACGTCCTTGATCATGAAGTCCACCAGGTTGGA
CAGGTCGTACTTGTGCTGCCAGTGCCAGTCGCGCCGCGCATCGGAGTCAT
CGAATACCTGCGGCCAGGCGTCTGCGATCAACTGGCGGCTATCTGGCTTG
TAGGTCACGTGCAGATTGGGCACGTGCTTGCCCAGCTGGGCGAACAGCTC
CTCGGGAGTGAAGGACATGGCGGTCACGTTGTAGACGCGGCGCTTCAGCT
GTTCGTTGGGAGCACGCATGAACTCGAGGAGAGCCCGCAAACAATCTTCA
ATGTACATCATGGGCAGTCTTGTGTCAGGACGCAGGTAGCAGGTGTACTT
TCCATTGCGCAGCGCTTCATGGAACACGGCCACAGCGTAATCTGTGGTGC
CGCCGCCCGGCGGATCACTGGAAATCACTCCTGGGAAGCGCAGGCATCTG
AAGTCCAGTCCAAACTTGTGGTAGTAGTATTCGCCAATCAGCTCGGCGTG
CACCTTGGAAACGCCGTAAATGGTGCGCGGCCGTTGGATCGTAACATTCG
GCGTGGGATTGCGAGGACTGTCGGGACCGAAGGCTCCGATTGTGCTTGGT
ACGAAGATGCGGAGCTTATACTGCTTCGCCAGCTCGATGACGTTGTGGAC
ACCCTCGATGTTGACCCTCACAGCCAGTGGAACATTTTGCTCTCCCACCG
CACTCAGCAGGGCCGAG

BS07732.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-PA 1104 CG5955-RA 354..1104 767..17 3755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1314 CG5955-RA 422..1172 767..17 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20469131..20469450 336..17 1600 100 Minus
3L 28110227 3L 20468312..20468460 590..442 745 100 Minus
3L 28110227 3L 20468125..20468253 718..590 645 100 Minus
3L 28110227 3L 20468964..20469072 443..335 545 100 Minus
3L 28110227 3L 20467918..20467969 767..716 260 100 Minus
Blast to na_te.dros performed on 2015-02-03 11:58:49 has no hits.

BS07732.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:56 Download gff for BS07732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 354..1104 17..767 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:16 Download gff for BS07732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 354..1104 17..767 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:08 Download gff for BS07732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 422..1172 17..767 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:19 Download gff for BS07732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 422..1172 17..767 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:19 Download gff for BS07732.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20467918..20467968 717..767 100 -> Minus
3L 20468127..20468253 590..716 100 -> Minus
3L 20468313..20468460 442..589 100 -> Minus
3L 20468966..20469071 336..441 100 -> Minus
3L 20469132..20469450 17..335 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:08 Download gff for BS07732.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20461018..20461068 717..767 100 -> Minus
arm_3L 20461227..20461353 590..716 100 -> Minus
arm_3L 20461413..20461560 442..589 100 -> Minus
arm_3L 20462066..20462171 336..441 100 -> Minus
arm_3L 20462232..20462550 17..335 100   Minus

BS07732.5prime Sequence

866 bp (784 high quality bases) assembled on 2006-01-06

> BS07732.5prime
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCG

BS07732.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-PA 1104 CG5955-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1314 CG5955-RA 69..918 17..866 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20467716..20467969 168..421 1270 100 Plus
3L 28110227 3L 20467012..20467167 17..172 780 100 Plus
3L 28110227 3L 20468312..20468460 547..695 745 100 Plus
3L 28110227 3L 20468125..20468253 419..547 645 100 Plus
3L 28110227 3L 20468964..20469072 694..802 545 100 Plus
3L 28110227 3L 20469131..20469196 801..866 330 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:18:31 has no hits.

BS07732.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:21:57 Download gff for BS07732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:17 Download gff for BS07732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:41 Download gff for BS07732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 62..918 8..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:33 Download gff for BS07732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 62..918 8..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:33 Download gff for BS07732.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20467005..20467165 8..170 97 -> Plus
3L 20467719..20467968 171..420 100 -> Plus
3L 20468127..20468253 421..547 100 -> Plus
3L 20468313..20468460 548..695 100 -> Plus
3L 20468966..20469071 696..801 100 -> Plus
3L 20469132..20469196 802..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:41 Download gff for BS07732.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20460105..20460265 8..170 97 -> Plus
arm_3L 20460819..20461068 171..420 100 -> Plus
arm_3L 20461227..20461353 421..547 100 -> Plus
arm_3L 20461413..20461560 548..695 100 -> Plus
arm_3L 20462066..20462171 696..801 100 -> Plus
arm_3L 20462232..20462296 802..866 100   Plus

BS07732.complete Sequence

1136 bp (1136 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638806

> BS07732.complete
GAAGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGG
CCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGC
CAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCC
ACCCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCG
CCAAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGAC
ATTATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGC
CGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCA
TTGACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAA
AATGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCAT
CGAGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCG
GAGCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATC
CAACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGAT
TGGCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCT
TCCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTAC
GCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTA
CCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGC
GGGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGC
GTCTACAACGTGACCGCCATGTCCTTCACTCCCGAGGAGCTGTTCGCCCA
GCTGGGCAAGCACGTGCCCAATCTGCACGTGACCTACAAGCCAGATAGCC
GCCAGTTGATCGCAGACGCCTGGCCGCAGGTATTCGATGACTCCGATGCG
CGGCGCGACTGGCACTGGCAGCACAAGTACGACCTGTCCAACCTGGTGGA
CTTCATGATCAAGGACGTGCAGGATAACTACATTAATGTTCAGCCGGAGC
AGCAGACTCTGCAGATCTAAAAGCTTTCTAGACCAT

BS07732.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1104 CG5955-PA 1..1104 17..1120 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-RA 1314 CG5955-RA 69..1172 17..1120 5520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20469131..20469450 801..1120 1600 100 Plus
3L 28110227 3L 20467716..20467969 168..421 1270 100 Plus
3L 28110227 3L 20467012..20467167 17..172 780 100 Plus
3L 28110227 3L 20468312..20468460 547..695 745 100 Plus
3L 28110227 3L 20468125..20468253 419..547 645 100 Plus
3L 28110227 3L 20468964..20469072 694..802 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:37:33 has no hits.

BS07732.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:29 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 1..1104 17..1120 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:19 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 58..1168 8..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:45 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 75..1170 23..1118 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:30 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 58..1168 8..1120 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:12 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5955-RA 75..1170 23..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:12 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20468313..20468460 548..695 100 -> Plus
3L 20468966..20469071 696..801 100 -> Plus
3L 20469132..20469448 802..1118 100   Plus
3L 20467719..20467968 171..420 100 -> Plus
3L 20468127..20468253 421..547 100 -> Plus
3L 20467018..20467165 23..170 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:45 Download gff for BS07732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20461227..20461353 421..547 100 -> Plus
arm_3L 20461413..20461560 548..695 100 -> Plus
arm_3L 20462066..20462171 696..801 100 -> Plus
arm_3L 20460118..20460265 23..170 100 -> Plus
arm_3L 20460819..20461068 171..420 100 -> Plus
arm_3L 20462232..20462548 802..1118 100   Plus

BS07732.pep Sequence

Translation from 16 to 1119

> BS07732.pep
MFRKCLASLALAPVASPIPLPRITPIASQLVQRRAFHQVPRESRPPKILI
TGGLGQLGIECAKLLRTQYGSQNVILSDIIKPSQSVLENGPYIFADILDF
KGLQKIVVDHRIDWLIHFSALLSAVGEQNVPLAVRVNIEGVHNVIELAKQ
YKLRIFVPSTIGAFGPDSPRNPTPNVTIQRPRTIYGVSKVHAELIGEYYY
HKFGLDFRCLRFPGVISSDPPGGGTTDYAVAVFHEALRNGKYTCYLRPDT
RLPMMYIEDCLRALLEFMRAPNEQLKRRVYNVTAMSFTPEELFAQLGKHV
PNLHVTYKPDSRQLIADAWPQVFDDSDARRDWHWQHKYDLSNLVDFMIKD
VQDNYINVQPEQQTLQI*

BS07732.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5955-PA 367 CG5955-PA 1..367 1..367 1934 100 Plus