Clone Sequence Records
BS07737.3prime Sequence
886 bp (749 high quality bases) assembled on 2006-01-06
> BS07737.3prime
ATGGTCTAGAAAGCTTCTAGTCGCAGTCATAGCGGGTGCACTTCTCAAAG
GCTCCAAGACCCTGCGGCTGGGGCTTCTTGCGACGGCGCTCGTACAGCAG
CTTCTTCTCGGCGGCGCACATGAGCCGACGCTTGATGTGATTGTCCATCT
CGAAGTCCAAGTCGGCCGGCTTGGCCAGCTCGTTGGGATCCCTTGTGGCT
GCCGAGTCCAGCGCCTTAATGATCAAACTGAGCAGCGCGTGCGCGAGGCG
ATGGCACACATCGTACTCGATGGCATCCTGGCTGGTGTAGTAGATGGCCG
ACTGTGAGGTGGGCTGCACACCAATGGCCAACAGGATGTTGCAGAAGATG
CCGCGCTGCATGCGCGCATACGGATCCACCAGCTGCGGCGGAATGCGCAT
CGTTGTGGCCAGATGGGAAATGAATTTGGCGAACTTCTTGATGAGCACGT
TCAGGTACTGGGTGCGGCACTGGCGCTCCAGCTTGGTCAGCATGTTGTAG
TACAGTTCCTGCTTGCGCTTCAGGAAATCCTCCTTCTTTCGCTCCTTGGT
CTTGTTGCTCTTAAGGATCTGCTCCAGCTGTTCCGTGGTAATGGCTTTGT
ATTTGCCCAGCATGCGCTTGATCCGCTTGGCCCGCAGCTTCGGATCGTAT
ACATCCTTGAACTGCTCGTAGTTGTCGATGAGCGTGTGCAACTTGGGCTT
GGACAGGGCCACGTCGTAGGGCTTTACCTTGGGCGGCAGTGTCGGCTGGT
AGGCCATGCGCCGCACATACAACTCCAGCTTGTCCAGTTCCTCCTCCCGC
CGCTTCTTTACGTTCTCCTCTGCGCACACATCCGGATCCTCCTCCTCGGG
CAGCGACTCCGTCGACGTGGGCATCGGCTCATCCCA
BS07737.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-PA | 894 | CG15892-RA | 25..894 | 886..17 | 4350 | 100 | Minus |
CG15892-PB | 894 | CG15892-RB | 25..894 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 1173 | CG15892-RA | 230..1099 | 886..17 | 4350 | 100 | Minus |
CG15896-RB | 2809 | CG15896-RB | 1812..2376 | 17..581 | 2825 | 100 | Plus |
CG15896-RB | 2809 | CG15896-RB | 2442..2746 | 582..886 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6293180..6293744 | 17..581 | 2825 | 100 | Plus |
X | 23542271 | X | 6293810..6294114 | 582..886 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:53:32 has no hits.
BS07737.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:04 Download gff for
BS07737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PA | 26..894 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:27 Download gff for
BS07737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PB | 26..894 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:18:30 Download gff for
BS07737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 231..1099 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:10 Download gff for
BS07737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 231..1099 | 17..885 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:10 Download gff for
BS07737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6293180..6293744 | 17..581 | 100 | <- | Plus |
X | 6293810..6294113 | 582..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:18:30 Download gff for
BS07737.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6187843..6188146 | 582..885 | 100 | | Plus |
arm_X | 6187213..6187777 | 17..581 | 100 | <- | Plus |
BS07737.5prime Sequence
864 bp (748 high quality bases) assembled on 2006-01-06
> BS07737.5prime
GAAGTTATCAGTCGACATGGCCAGCTCCAATGTCTCGGATTGGGATGAGC
CGATGCCCACGTCGACGGAGTCGCTGCCCGAGGAGGAGGATCCGGATGTG
TGCGCAGAGGAGAACGTAAAGAAGCGGCGGGAGGAGGAACTGGACAAGCT
GGAGTTGTATGTGCGGCGCATGGCCTACCAGCCGACACTGCCGCCCAAGG
TAAAGCCCTACGACGTGGCCCTGTCCAAGCCCAAGTTGCACACGCTCATC
GACAACTACGAGCAGTTCAAGGATGTATACGATCCGAAGCTGCGGGCCAA
GCGGATCAAGCGCATGCTGGGCAAATACAAAGCCATTACCACGGAACAGC
TGGAGCAGATCCTTAAGAGCAACAAGACCAAGGAGCGAAAGAAGGAGGAT
TTCCTGAAGCGCAAGCAGGAACTGTACTACAACATGCTGACCAAGCTGGA
GCGCCAGTGCCGCACCCAGTACCTGAACGTGCTCATCAAGAAGTTCGCCA
AATTCATTTCCCATCTGGCCACAACGATGCGCATTCCGCCGCAGCTGGTG
GATCCGTATGCGCGCATGCAGCGCGGCATCTTCTGCAACATCCTGTTGGC
CATTGGTGTGCAGCCCACCTCACAGTCGGCCATCTACTACACCAGCCAGG
ATGCCATCGAGTACGATGTGTGCCATCGCCTCGCGCACGCGCTGCTCAGT
TTGATCATTAAGGCGCTGGACTCGGCAGCCACAAGGGATCCCAACGAGCT
GGCCAAGCCGGCCGACTTGGACTTCGAGATGGACAATCACATCAAGCGTC
GGCTCATGTGCGCCGCCGAGAAGAAGCTGCTGTACGAGCGCCGTCGCAAG
AAGCCCCAGCCGCA
BS07737.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-PA | 894 | CG15892-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG15892-PB | 894 | CG15892-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 1173 | CG15892-RA | 205..1053 | 16..864 | 4245 | 100 | Plus |
CG15896-RB | 2809 | CG15896-RB | 1858..2376 | 864..346 | 2595 | 100 | Minus |
CG15896-RB | 2809 | CG15896-RB | 2442..2771 | 345..16 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6293226..6293744 | 864..346 | 2595 | 100 | Minus |
X | 23542271 | X | 6293810..6294139 | 345..16 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:18:22 has no hits.
BS07737.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:05 Download gff for
BS07737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:29 Download gff for
BS07737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PB | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:39 Download gff for
BS07737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 200..1052 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:30 Download gff for
BS07737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 200..1052 | 8..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:30 Download gff for
BS07737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6293810..6294144 | 8..345 | 99 | | Minus |
X | 6293227..6293744 | 346..863 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:39 Download gff for
BS07737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6187260..6187777 | 346..863 | 100 | <- | Minus |
arm_X | 6187843..6188177 | 8..345 | 99 | | Minus |
BS07737.complete Sequence
926 bp (926 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635967
> BS07737.complete
GAAGTTATCAGTCGACATGGCCAGCTCCAATGTCTCGGATTGGGATGAGC
CGATGCCCACGTCGACGGAGTCGCTGCCCGAGGAGGAGGATCCGGATGTG
TGCGCAGAGGAGAACGTAAAGAAGCGGCGGGAGGAGGAACTGGACAAGCT
GGAGTTGTATGTGCGGCGCATGGCCTACCAGCCGACACTGCCGCCCAAGG
TAAAGCCCTACGACGTGGCCCTGTCCAAGCCCAAGTTGCACACGCTCATC
GACAACTACGAGCAGTTCAAGGATGTATACGATCCGAAGCTGCGGGCCAA
GCGGATCAAGCGCATGCTGGGCAAATACAAAGCCATTACCACGGAACAGC
TGGAGCAGATCCTTAAGAGCAACAAGACCAAGGAGCGAAAGAAGGAGGAT
TTCCTGAAGCGCAAGCAGGAACTGTACTACAACATGCTGACCAAGCTGGA
GCGCCAGTGCCGCACCCAGTACCTGAACGTGCTCATCAAGAAGTTCGCCA
AATTCATTTCCCATCTGGCCACAACGATGCGCATTCCGCCGCAGCTGGTG
GATCCGTATGCGCGCATGCAGCGCGGCATCTTCTGCAACATCCTGTTGGC
CATTGGTGTGCAGCCCACCTCACAGTCGGCCATCTACTACACCAGCCAGG
ATGCCATCGAGTACGATGTGTGCCATCGCCTCGCGCACGCGCTGCTCAGT
TTGATCATTAAGGCGCTGGACTCGGCAGCCACAAGGGATCCCAACGAGCT
GGCCAAGCCGGCCGACTTGGACTTCGAGATGGACAATCACATCAAGCGTC
GGCTCATGTGCGCCGCCGAGAAGAAGCTGCTGTACGAGCGCCGTCGCAAG
AAGCCCCAGCCGCAGGGTCTTGGAGCCTTTGAGAAGTGCACCCGCTATGA
CTGCGACTAGAAGCTTTCTAGACCAT
BS07737.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 894 | CG15892-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 1173 | CG15892-RA | 205..1099 | 16..910 | 4475 | 100 | Plus |
CG15896-RB | 2809 | CG15896-RB | 1812..2376 | 910..346 | 2825 | 100 | Minus |
CG15896-RB | 2809 | CG15896-RB | 2442..2771 | 345..16 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6293180..6293744 | 910..346 | 2825 | 100 | Minus |
X | 23542271 | X | 6293810..6294139 | 345..16 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:51 has no hits.
BS07737.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:31 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RB | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:21 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15891-RA | 972..1871 | 8..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:19 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 206..1099 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:31 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15891-RA | 972..1871 | 8..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:37 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 206..1099 | 17..910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:37 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6293180..6293744 | 346..910 | 100 | <- | Minus |
X | 6293810..6294138 | 17..345 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:19 Download gff for
BS07737.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6187213..6187777 | 346..910 | 100 | <- | Minus |
arm_X | 6187843..6188171 | 17..345 | 100 | | Minus |
BS07737.pep Sequence
Translation from 16 to 909
> BS07737.pep
MASSNVSDWDEPMPTSTESLPEEEDPDVCAEENVKKRREEELDKLELYVR
RMAYQPTLPPKVKPYDVALSKPKLHTLIDNYEQFKDVYDPKLRAKRIKRM
LGKYKAITTEQLEQILKSNKTKERKKEDFLKRKQELYYNMLTKLERQCRT
QYLNVLIKKFAKFISHLATTMRIPPQLVDPYARMQRGIFCNILLAIGVQP
TSQSAIYYTSQDAIEYDVCHRLAHALLSLIIKALDSAATRDPNELAKPAD
LDFEMDNHIKRRLMCAAEKKLLYERRRKKPQPQGLGAFEKCTRYDCD*
BS07737.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-PA | 297 | CG15892-PA | 1..297 | 1..297 | 1547 | 100 | Plus |