Clone BS07740 Report

Search the DGRC for BS07740

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG5287-RA
Protein status:BS07740.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07740.3prime Sequence

882 bp (854 high quality bases) assembled on 2006-01-06

> BS07740.3prime
ATGGTCTAGAAAGCTTCTACGTTTTCGCATAGAAGTAGTTGGCCAGTGGA
TATCGTATGGTCAGGGCAATCAGTGTACACAGCACCTGGAATCCCATCAG
CATCTGGGTGACCACTCGCTCGTGGACAGGTCCGAAAACGACTAGGACAA
AGTTAATGAGCGTAAAGTTGTTGGTCCTAACAACTCCGTCCGCTTTGGTA
TGCCAGCTTATTAGTCGCAAGTTCCGCAGTACTGTGACCATCAGGCGACC
CGGAGCGTTGAGATCCTCCAGGCGAAACTCCGTGGTGCTGATGTGGAGCA
GATCCGTCTTGCTGTCGTACTTGGGCAGCCGGTGACGCGGACATGGCACA
AAGTGGAACAGCTGCGGCGTGGAGTACAGGAAATTCAGGATCTGCGGCAG
GAAGAAGAGCAGCAGCGTCTTGCTGAAGTGGCCCAGGATTCCAACCACGG
CGAAAGTCATGCCGGCAAAGTAGCAGTAGGTGTCCCCAACAAACACCTGC
GATGGATATTTGTTGAACTTCCATAGCGCTAGGGTGGTGGCCAGGAAAGG
CAGCATGAAGTAAATGGAGAATATATGCGAATCCACCTGGTGACCGAGCA
ACAGTTCAATGGCATTGAAGACCAGAATGGAGCCTGCAATAATAAAGGAT
TGTCCCACCTCCAGGCCATTGATGCCCGCCAGGATGTTGATGGCATTTGT
GCAGAATACCGCCAACATGCCCATGAAGACGTAGTACAAGGCACCTATAT
TCAAGGAGGTCCCAATCAGATTCCTTGCAAAGTTGGGCATAATGACCGTC
GTGGAGTTATAGTTTACGTAGTACACCATTAGCAGCGGCAACGTGGCGAT
GGTGGGCAACAGGAGCTTGTGGCGCCATCGCA

BS07740.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 1230 CG5287-RA 365..1230 882..17 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1557 CG5287-RA 596..1461 882..17 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13182907..13183399 509..17 2465 100 Minus
2L 23513712 2L 13180159..13180395 746..510 1185 100 Minus
2L 23513712 2L 13179963..13180102 882..743 700 100 Minus
Blast to na_te.dros performed on 2015-02-01 07:55:58 has no hits.

BS07740.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:10 Download gff for BS07740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 366..1230 17..881 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:35 Download gff for BS07740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 366..1230 17..881 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:18:54 Download gff for BS07740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 597..1465 12..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:28 Download gff for BS07740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 597..1465 12..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:28 Download gff for BS07740.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13179964..13180100 745..881 100 -> Minus
2L 13180161..13180395 510..744 100 -> Minus
2L 13182907..13183403 12..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:18:54 Download gff for BS07740.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179964..13180100 745..881 100 -> Minus
arm_2L 13180161..13180395 510..744 100 -> Minus
arm_2L 13182907..13183403 12..509 99   Minus

BS07740.5prime Sequence

913 bp (814 high quality bases) assembled on 2006-01-06

> BS07740.5prime
GAAGTTATCAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCA
TTTCGGGCGCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGC
GAGATGTTCATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGA
CAAGCCGCAGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCC
TGGTGTCCTTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCA
GCTGCCACGGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGA
TAAGTTCGTGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCT
TCTTGGGCTTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTC
CTGTTGCCCACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAA
CTATAACTCCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTG
GGACCTCCTTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTG
GCGGTATTCTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCT
GGAGGTGGGACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATG
CCATTGAACTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATT
TACTTCATGCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAA
CAAATATCCATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCG
GCATGACTTTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTG
CTGCTCTTCTTCCTGCCGCAGATCCTGAATTTCCTGTACTCCACGCCGCA
GCTGTTCCACTTT

BS07740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 1230 CG5287-RA 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1557 CG5287-RA 231..1128 16..913 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13180159..13180395 517..753 1185 100 Plus
2L 23513712 2L 13179885..13180102 303..520 1090 100 Plus
2L 23513712 2L 13182907..13183066 754..913 800 100 Plus
2L 23513712 2L 13179477..13179623 16..162 735 100 Plus
2L 23513712 2L 13179683..13179824 163..304 710 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:12:31 has no hits.

BS07740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:11 Download gff for BS07740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 1..897 17..913 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:37 Download gff for BS07740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:04:30 Download gff for BS07740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 227..1128 13..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:21 Download gff for BS07740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 227..1128 13..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:21 Download gff for BS07740.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13179473..13179623 13..162 99 -> Plus
2L 13179683..13179824 163..304 100 -> Plus
2L 13179887..13180100 305..518 100 -> Plus
2L 13180161..13180395 519..753 100 -> Plus
2L 13182907..13183066 754..913 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:04:30 Download gff for BS07740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179473..13179623 13..162 99 -> Plus
arm_2L 13179683..13179824 163..304 100 -> Plus
arm_2L 13179887..13180100 305..518 100 -> Plus
arm_2L 13180161..13180395 519..753 100 -> Plus
arm_2L 13182907..13183066 754..913 100   Plus

BS07740.complete Sequence

1262 bp (1262 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635968

> BS07740.complete
GAAGTTATCAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCA
TTTCGGGCGCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGC
GAGATGTTCATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGA
CAAGCCGCAGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCC
TGGTGTCCTTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCA
GCTGCCACGGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGA
TAAGTTCGTGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCT
TCTTGGGCTTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTC
CTGTTGCCCACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAA
CTATAACTCCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTG
GGACCTCCTTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTG
GCGGTATTCTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCT
GGAGGTGGGACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATG
CCATTGAACTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATT
TACTTCATGCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAA
CAAATATCCATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCG
GCATGACTTTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTG
CTGCTCTTCTTCCTGCCGCAGATCCTGAATTTCCTGTACTCCACGCCGCA
GCTGTTCCACTTTGTGCCATGTCCGCGTCACCGGCTGCCCAAGTACGACA
GCAAGACGGATCTGCTCCACATCAGCACCACGGAGTTTCGCCTGGAGGAT
CTCAACGCTCCGGGTCGCCTGATGGTCACAGTACTGCGGAACTTGCGACT
AATAAGCTGGCATACCAAAGCGGACGGAGTTGTTAGGACCAACAACTTTA
CGCTCATTAACTTTGTCCTAGTCGTTTTCGGACCTGTCCACGAGCGAGTG
GTCACCCAGATGCTGATGGGATTCCAGGTGCTGTGTACACTGATTGCCCT
GACCATACGATATCCACTGGCCAACTACTTCTATGCGAAAACGTAGAAGC
TTTCTAGACCAT

BS07740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1230 CG5287-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1557 CG5287-RA 231..1461 16..1246 6155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13182907..13183399 754..1246 2465 100 Plus
2L 23513712 2L 13180159..13180395 517..753 1185 100 Plus
2L 23513712 2L 13179885..13180102 303..520 1090 100 Plus
2L 23513712 2L 13179477..13179623 16..162 735 100 Plus
2L 23513712 2L 13179683..13179824 163..304 710 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:00:47 has no hits.

BS07740.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:15 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:13 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 229..1467 13..1251 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:57 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 232..1461 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:15 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 229..1467 13..1251 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:38 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 232..1461 17..1246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:38 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180161..13180395 519..753 100 -> Plus
2L 13179683..13179824 163..304 100 -> Plus
2L 13179887..13180100 305..518 100 -> Plus
2L 13179478..13179623 17..162 100 -> Plus
2L 13182907..13183399 754..1246 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:57 Download gff for BS07740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179478..13179623 17..162 100 -> Plus
arm_2L 13179683..13179824 163..304 100 -> Plus
arm_2L 13179887..13180100 305..518 100 -> Plus
arm_2L 13180161..13180395 519..753 100 -> Plus
arm_2L 13182907..13183399 754..1246 100   Plus

BS07740.pep Sequence

Translation from 16 to 1245

> BS07740.pep
MSGVAIAINAAISGAAYCMTVRMIPRFREMFIKANLFGNDLCKKDKPQVP
ESFGVLIGCVFLVSLFLFIPIPFAFDEAAATDAITGGKPDTFPHDKFVEL
IAALLSICCMIFLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVNYNSTT
VIMPNFARNLIGTSLNIGALYYVFMGMLAVFCTNAINILAGINGLEVGQS
FIIAGSILVFNAIELLLGHQVDSHIFSIYFMLPFLATTLALWKFNKYPSQ
VFVGDTYCYFAGMTFAVVGILGHFSKTLLLFFLPQILNFLYSTPQLFHFV
PCPRHRLPKYDSKTDLLHISTTEFRLEDLNAPGRLMVTVLRNLRLISWHT
KADGVVRTNNFTLINFVLVVFGPVHERVVTQMLMGFQVLCTLIALTIRYP
LANYFYAKT*

BS07740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 409 CG5287-PA 1..409 1..409 2126 100 Plus