Clone Sequence Records
BS07740.3prime Sequence
882 bp (854 high quality bases) assembled on 2006-01-06
> BS07740.3prime
ATGGTCTAGAAAGCTTCTACGTTTTCGCATAGAAGTAGTTGGCCAGTGGA
TATCGTATGGTCAGGGCAATCAGTGTACACAGCACCTGGAATCCCATCAG
CATCTGGGTGACCACTCGCTCGTGGACAGGTCCGAAAACGACTAGGACAA
AGTTAATGAGCGTAAAGTTGTTGGTCCTAACAACTCCGTCCGCTTTGGTA
TGCCAGCTTATTAGTCGCAAGTTCCGCAGTACTGTGACCATCAGGCGACC
CGGAGCGTTGAGATCCTCCAGGCGAAACTCCGTGGTGCTGATGTGGAGCA
GATCCGTCTTGCTGTCGTACTTGGGCAGCCGGTGACGCGGACATGGCACA
AAGTGGAACAGCTGCGGCGTGGAGTACAGGAAATTCAGGATCTGCGGCAG
GAAGAAGAGCAGCAGCGTCTTGCTGAAGTGGCCCAGGATTCCAACCACGG
CGAAAGTCATGCCGGCAAAGTAGCAGTAGGTGTCCCCAACAAACACCTGC
GATGGATATTTGTTGAACTTCCATAGCGCTAGGGTGGTGGCCAGGAAAGG
CAGCATGAAGTAAATGGAGAATATATGCGAATCCACCTGGTGACCGAGCA
ACAGTTCAATGGCATTGAAGACCAGAATGGAGCCTGCAATAATAAAGGAT
TGTCCCACCTCCAGGCCATTGATGCCCGCCAGGATGTTGATGGCATTTGT
GCAGAATACCGCCAACATGCCCATGAAGACGTAGTACAAGGCACCTATAT
TCAAGGAGGTCCCAATCAGATTCCTTGCAAAGTTGGGCATAATGACCGTC
GTGGAGTTATAGTTTACGTAGTACACCATTAGCAGCGGCAACGTGGCGAT
GGTGGGCAACAGGAGCTTGTGGCGCCATCGCA
BS07740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-PA | 1230 | CG5287-RA | 365..1230 | 882..17 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-RA | 1557 | CG5287-RA | 596..1461 | 882..17 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13182907..13183399 | 509..17 | 2465 | 100 | Minus |
2L | 23513712 | 2L | 13180159..13180395 | 746..510 | 1185 | 100 | Minus |
2L | 23513712 | 2L | 13179963..13180102 | 882..743 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:55:58 has no hits.
BS07740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:10 Download gff for
BS07740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-PA | 366..1230 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:35 Download gff for
BS07740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-PA | 366..1230 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:18:54 Download gff for
BS07740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 597..1465 | 12..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:28 Download gff for
BS07740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 597..1465 | 12..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:28 Download gff for
BS07740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13179964..13180100 | 745..881 | 100 | -> | Minus |
2L | 13180161..13180395 | 510..744 | 100 | -> | Minus |
2L | 13182907..13183403 | 12..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:18:54 Download gff for
BS07740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13179964..13180100 | 745..881 | 100 | -> | Minus |
arm_2L | 13180161..13180395 | 510..744 | 100 | -> | Minus |
arm_2L | 13182907..13183403 | 12..509 | 99 | | Minus |
BS07740.5prime Sequence
913 bp (814 high quality bases) assembled on 2006-01-06
> BS07740.5prime
GAAGTTATCAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCA
TTTCGGGCGCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGC
GAGATGTTCATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGA
CAAGCCGCAGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCC
TGGTGTCCTTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCA
GCTGCCACGGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGA
TAAGTTCGTGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCT
TCTTGGGCTTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTC
CTGTTGCCCACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAA
CTATAACTCCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTG
GGACCTCCTTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTG
GCGGTATTCTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCT
GGAGGTGGGACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATG
CCATTGAACTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATT
TACTTCATGCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAA
CAAATATCCATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCG
GCATGACTTTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTG
CTGCTCTTCTTCCTGCCGCAGATCCTGAATTTCCTGTACTCCACGCCGCA
GCTGTTCCACTTT
BS07740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-PA | 1230 | CG5287-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-RA | 1557 | CG5287-RA | 231..1128 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13180159..13180395 | 517..753 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 13179885..13180102 | 303..520 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 13182907..13183066 | 754..913 | 800 | 100 | Plus |
2L | 23513712 | 2L | 13179477..13179623 | 16..162 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13179683..13179824 | 163..304 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:12:31 has no hits.
BS07740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:11 Download gff for
BS07740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:37 Download gff for
BS07740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:04:30 Download gff for
BS07740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 227..1128 | 13..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:21 Download gff for
BS07740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 227..1128 | 13..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:21 Download gff for
BS07740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13179473..13179623 | 13..162 | 99 | -> | Plus |
2L | 13179683..13179824 | 163..304 | 100 | -> | Plus |
2L | 13179887..13180100 | 305..518 | 100 | -> | Plus |
2L | 13180161..13180395 | 519..753 | 100 | -> | Plus |
2L | 13182907..13183066 | 754..913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:04:30 Download gff for
BS07740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13179473..13179623 | 13..162 | 99 | -> | Plus |
arm_2L | 13179683..13179824 | 163..304 | 100 | -> | Plus |
arm_2L | 13179887..13180100 | 305..518 | 100 | -> | Plus |
arm_2L | 13180161..13180395 | 519..753 | 100 | -> | Plus |
arm_2L | 13182907..13183066 | 754..913 | 100 | | Plus |
BS07740.complete Sequence
1262 bp (1262 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635968
> BS07740.complete
GAAGTTATCAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCA
TTTCGGGCGCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGC
GAGATGTTCATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGA
CAAGCCGCAGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCC
TGGTGTCCTTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCA
GCTGCCACGGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGA
TAAGTTCGTGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCT
TCTTGGGCTTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTC
CTGTTGCCCACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAA
CTATAACTCCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTG
GGACCTCCTTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTG
GCGGTATTCTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCT
GGAGGTGGGACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATG
CCATTGAACTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATT
TACTTCATGCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAA
CAAATATCCATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCG
GCATGACTTTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTG
CTGCTCTTCTTCCTGCCGCAGATCCTGAATTTCCTGTACTCCACGCCGCA
GCTGTTCCACTTTGTGCCATGTCCGCGTCACCGGCTGCCCAAGTACGACA
GCAAGACGGATCTGCTCCACATCAGCACCACGGAGTTTCGCCTGGAGGAT
CTCAACGCTCCGGGTCGCCTGATGGTCACAGTACTGCGGAACTTGCGACT
AATAAGCTGGCATACCAAAGCGGACGGAGTTGTTAGGACCAACAACTTTA
CGCTCATTAACTTTGTCCTAGTCGTTTTCGGACCTGTCCACGAGCGAGTG
GTCACCCAGATGCTGATGGGATTCCAGGTGCTGTGTACACTGATTGCCCT
GACCATACGATATCCACTGGCCAACTACTTCTATGCGAAAACGTAGAAGC
TTTCTAGACCAT
BS07740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-RA | 1230 | CG5287-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-RA | 1557 | CG5287-RA | 231..1461 | 16..1246 | 6155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13182907..13183399 | 754..1246 | 2465 | 100 | Plus |
2L | 23513712 | 2L | 13180159..13180395 | 517..753 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 13179885..13180102 | 303..520 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 13179477..13179623 | 16..162 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13179683..13179824 | 163..304 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:00:47 has no hits.
BS07740.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:15 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:13 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 229..1467 | 13..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:57 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 232..1461 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:15 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 229..1467 | 13..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:38 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5287-RA | 232..1461 | 17..1246 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:38 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13180161..13180395 | 519..753 | 100 | -> | Plus |
2L | 13179683..13179824 | 163..304 | 100 | -> | Plus |
2L | 13179887..13180100 | 305..518 | 100 | -> | Plus |
2L | 13179478..13179623 | 17..162 | 100 | -> | Plus |
2L | 13182907..13183399 | 754..1246 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:57 Download gff for
BS07740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13179478..13179623 | 17..162 | 100 | -> | Plus |
arm_2L | 13179683..13179824 | 163..304 | 100 | -> | Plus |
arm_2L | 13179887..13180100 | 305..518 | 100 | -> | Plus |
arm_2L | 13180161..13180395 | 519..753 | 100 | -> | Plus |
arm_2L | 13182907..13183399 | 754..1246 | 100 | | Plus |
BS07740.pep Sequence
Translation from 16 to 1245
> BS07740.pep
MSGVAIAINAAISGAAYCMTVRMIPRFREMFIKANLFGNDLCKKDKPQVP
ESFGVLIGCVFLVSLFLFIPIPFAFDEAAATDAITGGKPDTFPHDKFVEL
IAALLSICCMIFLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVNYNSTT
VIMPNFARNLIGTSLNIGALYYVFMGMLAVFCTNAINILAGINGLEVGQS
FIIAGSILVFNAIELLLGHQVDSHIFSIYFMLPFLATTLALWKFNKYPSQ
VFVGDTYCYFAGMTFAVVGILGHFSKTLLLFFLPQILNFLYSTPQLFHFV
PCPRHRLPKYDSKTDLLHISTTEFRLEDLNAPGRLMVTVLRNLRLISWHT
KADGVVRTNNFTLINFVLVVFGPVHERVVTQMLMGFQVLCTLIALTIRYP
LANYFYAKT*
BS07740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5287-PA | 409 | CG5287-PA | 1..409 | 1..409 | 2126 | 100 | Plus |