Clone Sequence Records
BS07741.3prime Sequence
875 bp (760 high quality bases) assembled on 2006-01-06
> BS07741.3prime
ATGGTCTAGAAAGCTTTTACGTTCCCTGATGGATGCCCCCATCTTGGACG
GGCAGTGGAACGGGCATGTCAATGTGGTGCACAACGATGACGTTCTCACC
GCCGTTCAGCGCCTCCAGCTCAGCGGACGTCTTGCTCTCCTGAAGCTGCT
GCTCTCGCCTGCTGTTCAGGTAATAGACGCCGGCTACGATCAGGCTGAAC
GATGTCACCGATATGAGCAGGGTGCCGTATTTAAGAGTTTGCTGAATGGC
ATTCAGGCCAAAGGTGCTTAAGTACAGCGTGTGGAGCACCTCCTCGGAAA
AGTCTCCCGACGTGATCTCGATCCACATAAGTGGAAGGATGGTAGTGTTC
TTTAATCTATCGCCCTGATTTCTCAATATCGGCGTCTTGTCCAGCATTAT
GTTTATCTGGACACGGGACGCGCCGCTAATTGGAAAACCGAATCGAGGAT
GGATGTCGGCATAGGTTTGATGCACTGCTGCGTCTGGCTCAATACCCTCA
AAGTCTTGGTACAGCACCGGATCGCCCGTGAAGAAATGTGGGAACGAGGG
AAAAATGGGCGCATCCCCGTAGCACTTGGTGGCGTTGATAACTCCGCTGG
GCAAGCACAGTTCTGTGTTCTGACAATAGCACTGGTTCGCAGGATTTTTG
GACGGATGGCTGAATACGTCCATTGGCGTCCGGTAGCGCAGAACATCAAT
GTCGTTGTAGATGGTAACCTCTTTTTCGAAGTGTAGCGGCACCTTGCGGC
ACAGCACCTGGAGGAATACATTAACTGTGCTGCGATCCTGCAGCAAATGT
GGTGAGAACATAGAAGGCTCGGAGCCGTCGATGCGATTGCACTCATCCCC
CTCCCAGTAGTCCAACTGGGGCATG
BS07741.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-PA | 1794 | CG3829-RA | 936..1794 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-RB | 2059 | CG3829-RB | 1007..1868 | 875..14 | 4310 | 100 | Minus |
| CG3829-RA | 3159 | CG3829-RA | 2107..2968 | 875..14 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24989378..24989883 | 875..370 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 24989943..24990298 | 369..14 | 1780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:24:36 has no hits.
BS07741.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:12 Download gff for
BS07741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-PA | 936..1794 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:38 Download gff for
BS07741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-PA | 936..1794 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:46:43 Download gff for
BS07741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 2107..2968 | 14..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:01:19 Download gff for
BS07741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 2107..2968 | 14..875 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:01:19 Download gff for
BS07741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24989378..24989883 | 370..875 | 100 | -> | Minus |
| 2R | 24989943..24990298 | 14..369 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:46:43 Download gff for
BS07741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20876901..20877406 | 370..875 | 100 | -> | Minus |
| arm_2R | 20877466..20877821 | 14..369 | 100 | | Minus |
BS07741.5prime Sequence
814 bp (763 high quality bases) assembled on 2006-01-06
> BS07741.5prime
GAAGTTATCAGTCGACATGTCACATACCAAAGATGCAGAGATGTCCATGC
CCGCTCGGCAGGAATCTGATCGTACATCGGCCCCATCTGTTACTAAATCC
CTCACTCTGAACTCTACTCGGAGCGGGGTGGGCACGGGAAACTTTGGGGG
CTACGGCATGACGAACGGGGCCGAGAAACCTTCTGTGCTGCACATGATAA
TGGAAGCCTTGGGTCTACGCAATCAGGCTCAAAACCGCGAGCCAACATCC
AAGGATATTGGAACTCTGATAATGCTGGGCGTAATGTTTTTGCTCTTTGT
AATCAGCGTGACCGGATTTTTCGTAATGTGGTTTACCGAATATTACAACA
ACACCATTCTGGAGAACCTGATCCTGGCCGAAAACTCGGATACCGCTAAT
AGTTGGCTTAACCCTGATCCTAAGTACGACACTTTGCTAAAGGCTCACAT
TTTTCACTACCCCAACATCGATGACTACTTAGCAGGGCGGGCAGATAAAA
TAAAGGTCGTGGATGTGGGACCTCTCACCTACCAGGAACACACTGTTAAA
GATGAAGTTTCCTTTAACAAAAATTTCACTGTTAGCTTCAGGGACCGCAA
GTCTTATAAGTTTCTCCCGGAAAAGTCGTCTATTGGGGAACACGAAGTGG
TCAGGGTGCCCAATGTGCCGCTTATCTCTGCCGCCGGACCAGTTAAGCGC
ATGAAGGCTTTCGAACGCTTAGCTGTATCCACTTGGATAAAACAATTCAA
GGAGCCTCTCTTTAAGAATCTCACGGTTTCCGAATATCTCTGGGGTTATG
AGGACAGCATTATC
BS07741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-PA | 1794 | CG3829-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-RB | 2059 | CG3829-RB | 72..869 | 17..814 | 3990 | 100 | Plus |
| CG3829-RA | 3159 | CG3829-RA | 1172..1969 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24988215..24988470 | 17..272 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 24988678..24988908 | 363..593 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 24988961..24989183 | 592..814 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 24988531..24988622 | 273..364 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:42:13 has no hits.
BS07741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:13 Download gff for
BS07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:41 Download gff for
BS07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:26 Download gff for
BS07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1160..1969 | 6..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:35 Download gff for
BS07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1160..1969 | 6..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:35 Download gff for
BS07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24988203..24988470 | 6..272 | 98 | -> | Plus |
| 2R | 24988531..24988622 | 273..364 | 100 | -> | Plus |
| 2R | 24988680..24988907 | 365..592 | 100 | -> | Plus |
| 2R | 24988962..24989183 | 593..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:26 Download gff for
BS07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20875726..20875993 | 6..272 | 98 | -> | Plus |
| arm_2R | 20876054..20876145 | 273..364 | 100 | -> | Plus |
| arm_2R | 20876203..20876430 | 365..592 | 100 | -> | Plus |
| arm_2R | 20876485..20876706 | 593..814 | 100 | | Plus |
BS07741.complete Sequence
1826 bp assembled on 2009-08-24
GenBank Submission: KX803121
> BS07741.complete
GAAGTTATCAGTCGACATGTCACATACCAAAGATGCAGAGATGTCCATGC
CCGCTCGGCAGGAATCTGATCGTACATCGGCCCCATCTGTTACTAAATCC
CTCACTCTGAACTCTACTCGGAGCGGGGTGGGCACGGGAAACTTTGGGGG
CTACGGCATGACGAACGGGGCCGAGAAACCTTCTGTGCTGCACATGATAA
TGGAAGCCTTGGGTCTACGCAATCAGGCTCAAAACCGCGAGCCAACATCC
AAGGATATTGGAACTCTGATAATGCTGGGCGTAATGTTTTTGCTCTTTGT
AATCAGCGTGACCGGATTTTTCGTAATGTGGTTTACCGAATATTACAACA
ACACCATTCTGGAGAACCTGATCCTGGCCGAAAACTCGGATACCGCTAAT
AGTTGGCTTAACCCTGATCCTAAGTACGACACTTTGCTAAAGGCTCACAT
TTTTCACTACCCCAACATCGATGACTACTTAGCAGGGCGGGCAGATAAAA
TAAAGGTCGTGGATGTGGGACCTCTCACCTACCAGGAACACACTGTTAAA
GATGAAGTTTCCTTTAACAAAAATTTCACTGTTAGCTTCAGGGACCGCAA
GTCTTATAAGTTTCTCCCGGAAAAGTCGTCTATTGGGGAACACGAAGTGG
TCAGGGTGCCCAATGTGCCGCTTATCTCTGCCGCCGGACCAGTTAAGCGC
ATGAAGGCTTTCGAACGCTTAGCTGTATCCACTTGGATAAAACAATTCAA
GGAGCCTCTCTTTAAGAATCTCACGGTTTCCGAATATCTCTGGGGTTATG
AGGACAGCATTATCAAGTTAAAATCACTGGGCAGAGGCCGGCGACGGTTT
GGTCTTCTGATGAGCCGCAACGGGACTAGCGTGGATTCGGTCCAGCTTAA
TACAGGCGAGGACGACATCACCAAGTTCAGCATCATTACCCAGTTTAACG
GCATGCCCCAGTTGGACTACTGGGAGGGGGATGAGTGCAATCGCATCGAC
GGCTCCGAGCCTTCTATGTTCTCACCACATTTGCTGCAGGATCGCAGCAC
AGTTAATGTATTCCTCCAGGTGCTGTGCCGCAAGGTGCCGCTACACTTCG
AAAAAGAGGTTACCATCTACAACGACATTGATGTTCTGCGCTACCGGACG
CCAATGGACGTATTCAGCCATCCGTCCAAAAATCCTGCGAACCAGTGCTA
TTGTCAGAACACAGAACTGTGCTTGCCCAGCGGAGTTATCAACGCCACCA
AGTGCTACGGGGATGCGCCCATTTTTCCCTCGTTCCCACATTTCTTCACG
GGCGATCCGGTGCTGTACCAAGACTTTGAGGGTATTGAGCCAGACGCAGC
AGTGCATCAAACCTATGCCGACATCCATCCTCGATTCGGTTTTCCAATTA
GCGGCGCGTCCCGTGTCCAGATAAACATAATGCTGGACAAGACGCCGATA
TTGAGAAATCAGGGCGATAGATTAAAGAACACTACCATCCTTCCACTTAT
GTGGATCGAGATCACGTCGGGAGACTTTTCCGAGGAGGTGCTCCACACGC
TGTACTTAAGCACCTTTGGCCTGAATGCCATTCAGCAAACTCTTAAATAC
GGCACCCTGCTCATATCGGTGACATCGTTCAGCCTGATCGTAGCCGGCGT
CTATTACCTGAACAGCAGGCGAGAGCAGCAGCTTCAGGAGAGCAAGACGT
CCGCTGAGCTGGAGGCGCTGAACGGCGGTGAGAACGTCATCGTTGTGCAC
CACATTGACATGCCCGTTCCACTGCCCGTCCAAGATGGGGGCATCCATCA
GGGAACGTAAAAGCTTTCTAGACCAT
BS07741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-RB | 1794 | CG3829-PB | 1..1794 | 17..1810 | 8970 | 100 | Plus |
| CG3829-RA | 1794 | CG3829-PA | 1..1794 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-RB | 2059 | CG3829-RB | 72..1868 | 17..1813 | 8985 | 100 | Plus |
| CG3829-RA | 3159 | CG3829-RA | 1172..2968 | 17..1813 | 8985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24989292..24989883 | 866..1457 | 2960 | 100 | Plus |
| 2R | 25286936 | 2R | 24989943..24990298 | 1458..1813 | 1780 | 100 | Plus |
| 2R | 25286936 | 2R | 24988961..24989234 | 592..865 | 1370 | 100 | Plus |
| 2R | 25286936 | 2R | 24988215..24988470 | 17..272 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 24988678..24988908 | 363..593 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 24988531..24988622 | 273..364 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:33:54 has no hits.
BS07741.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:10 Download gff for
BS07741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1261..3052 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:12 Download gff for
BS07741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1172..2963 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:33 Download gff for
BS07741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1172..2963 | 17..1808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:33 Download gff for
BS07741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24988962..24989234 | 593..865 | 100 | -> | Plus |
| 2R | 24989943..24990293 | 1458..1808 | 100 | | Plus |
| 2R | 24988215..24988470 | 17..272 | 100 | -> | Plus |
| 2R | 24988531..24988622 | 273..364 | 100 | -> | Plus |
| 2R | 24988680..24988907 | 365..592 | 100 | -> | Plus |
| 2R | 24989292..24989883 | 866..1457 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:12 Download gff for
BS07741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20875738..20875993 | 17..272 | 100 | -> | Plus |
| arm_2R | 20876054..20876145 | 273..364 | 100 | -> | Plus |
| arm_2R | 20876203..20876430 | 365..592 | 100 | -> | Plus |
| arm_2R | 20876485..20876757 | 593..865 | 100 | -> | Plus |
| arm_2R | 20876815..20877406 | 866..1457 | 100 | -> | Plus |
| arm_2R | 20877466..20877816 | 1458..1808 | 100 | | Plus |
BS07741.pep Sequence
Translation from 16 to 1809
> BS07741.pep
MSHTKDAEMSMPARQESDRTSAPSVTKSLTLNSTRSGVGTGNFGGYGMTN
GAEKPSVLHMIMEALGLRNQAQNREPTSKDIGTLIMLGVMFLLFVISVTG
FFVMWFTEYYNNTILENLILAENSDTANSWLNPDPKYDTLLKAHIFHYPN
IDDYLAGRADKIKVVDVGPLTYQEHTVKDEVSFNKNFTVSFRDRKSYKFL
PEKSSIGEHEVVRVPNVPLISAAGPVKRMKAFERLAVSTWIKQFKEPLFK
NLTVSEYLWGYEDSIIKLKSLGRGRRRFGLLMSRNGTSVDSVQLNTGEDD
ITKFSIITQFNGMPQLDYWEGDECNRIDGSEPSMFSPHLLQDRSTVNVFL
QVLCRKVPLHFEKEVTIYNDIDVLRYRTPMDVFSHPSKNPANQCYCQNTE
LCLPSGVINATKCYGDAPIFPSFPHFFTGDPVLYQDFEGIEPDAAVHQTY
ADIHPRFGFPISGASRVQINIMLDKTPILRNQGDRLKNTTILPLMWIEIT
SGDFSEEVLHTLYLSTFGLNAIQQTLKYGTLLISVTSFSLIVAGVYYLNS
RREQQLQESKTSAELEALNGGENVIVVHHIDMPVPLPVQDGGIHQGT*
BS07741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-PB | 597 | CG3829-PB | 1..597 | 1..597 | 3131 | 100 | Plus |
| CG3829-PA | 597 | CG3829-PA | 1..597 | 1..597 | 3131 | 100 | Plus |
| emp-PE | 508 | CG2727-PE | 29..495 | 106..582 | 597 | 32.2 | Plus |
| emp-PD | 520 | CG2727-PD | 41..507 | 106..582 | 597 | 32.2 | Plus |
| emp-PA | 520 | CG2727-PA | 41..507 | 106..582 | 597 | 32.2 | Plus |
