Clone Sequence Records
BS07742.3prime Sequence
891 bp (818 high quality bases) assembled on 2006-01-06
> BS07742.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCAATGGAGCCCTCGGCTTCCAGTTGG
GCCTTGCGACTTGGCTTCGGGTGCATCAGAATAAATGGTAGCTCAGCGCA
GAGCTCGCCGCCCAGGGCTCCCAAGAAAAGCTTGACCTTCACAGCATATG
AAACAATTATGCCAAAGGCATCCCTCGCATCCTGACTGGCAATAAGTGTG
GTCGAGGCCAGAGCTGTGTCTTTGCGCTTGATATCACCCTCAACGGCGAT
GCCTGCGCGGTCGCAATTGGCCACCAGGGTGGGCACCAGATACATGACCT
TCTGCAGGCTGGATCCCGGGTTCAGGGGACATCCCTCGCTCGTCTCCATG
AAGGCGATCGTGTTGCGGAACTGACCGTTCTGGAACAGGACCACATCGAC
GCCCTGCTGCACCATGGCCTTGATCTTCTTCACCACCTTGTTGGAGTTGT
TGCGCACGCAGATGTTCACCGAGATCTTCTCGCCGTGATGGTACAGCTGC
TTGTCGAGGGTGACCTCCAGTTCGAGCTCTCCGGGCGACAGAAGGAAGTC
CTTGCGAACGACGGTGCAGGGCTGGATGCCCTGCTTGGTCGGTGCGTACT
GCACCTTGCGGATGCCCAGGTTAATGGTGCTCCTGCGATGCGATCGATCG
CAGTCGCTGTCTCCGGTAAAGATCTTTACGAAGTACTGGACTCCGCAGGG
CTGGCTCTCGTCACTGGCCTTCTGCTGGAGAACCACCGAGGCCGGCGAGC
TTGGTGGCATCTGCATCACGAAGGGATAGGCATTGGAGCCAAGCTTCTTC
AGCAGACGCTCCTGCATCTTGGTCAACTGGATGTCCTGCTTCTGGGGTGG
GCACACCTGCTGCGAGACCAGGGTCAGTTCCTTCTGGGACC
BS07742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5711-PA | 1095 | Arr1-RA | 225..1095 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arr1-RC | 1356 | CG5711-RC | 261..1136 | 891..16 | 4365 | 99.9 | Minus |
Arr1-RB | 2327 | CG5711-RB | 340..1215 | 891..16 | 4365 | 99.9 | Minus |
Arr1-RA | 1435 | CG5711-RA | 340..1215 | 891..16 | 4365 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18079027..18079723 | 891..195 | 3470 | 99.9 | Minus |
2L | 23513712 | 2L | 18079957..18080086 | 194..65 | 650 | 100 | Minus |
2L | 23513712 | 2L | 18080145..18080195 | 66..16 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:06:26 has no hits.
BS07742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:14 Download gff for
BS07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-PA | 221..1095 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:42 Download gff for
BS07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5711-PA | 221..1095 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:38 Download gff for
BS07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 340..1217 | 12..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:56 Download gff for
BS07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 340..1217 | 12..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:56 Download gff for
BS07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18079027..18079723 | 195..891 | 99 | -> | Minus |
2L | 18079957..18080086 | 65..194 | 100 | -> | Minus |
2L | 18080147..18080197 | 12..64 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:38 Download gff for
BS07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18079027..18079723 | 195..891 | 99 | -> | Minus |
arm_2L | 18079957..18080086 | 65..194 | 100 | -> | Minus |
arm_2L | 18080147..18080197 | 12..64 | 96 | | Minus |
BS07742.5prime Sequence
975 bp (823 high quality bases) assembled on 2006-01-06
> BS07742.5prime
GAAGTTATCAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTT
CCCCGAACAACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGAT
TCCGTGACTCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGA
GTACGTGCGCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCC
GATATGGGCGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAA
CTGACCCTGGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCA
GTTGACCAAGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCT
ATCCCTTCGTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTC
CAGCAGAAGGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGT
AAAGATCTTTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCA
CCATTAACCTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGC
ATCCAGCCCTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGA
GCTCGAACTGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGA
AGATCTCGGTGAACATCTGCGTGCGCAACAACTCCAACAAGGTGGTGAAG
AAGATCAAGGCCATGGTGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAA
CGGTCAGTTCCGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTC
CCCTGAACCCGGGATCCAGCCTGCAGAANGTCATGTATCTGGGTGCCACC
CTGGTGGCCAATTGCGACCGCGCAGGCATCGCCGTTGAGGGTGATATCAA
GCGCAAAGACACAGCTCTGGGCTCGACCACACTTATTGCCAGTCAGGATG
CGAGGGATGCCTTTGGCATAATTGT
BS07742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5711-PA | 1095 | Arr1-RA | 1..826 | 17..842 | 4111 | 99.8 | Plus |
CG5711-PA | 1095 | Arr1-RA | 830..959 | 846..975 | 625 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arr1-RB | 2327 | CG5711-RB | 120..1078 | 17..975 | 4724 | 99.6 | Plus |
Arr1-RA | 1435 | CG5711-RA | 120..1078 | 17..975 | 4724 | 99.6 | Plus |
Arr1-RC | 1356 | CG5711-RC | 150..999 | 126..975 | 4179 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18078915..18079723 | 125..933 | 3974 | 99.4 | Plus |
2L | 23513712 | 2L | 18078388..18078496 | 17..125 | 545 | 100 | Plus |
2L | 23513712 | 2L | 18079957..18079998 | 934..975 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:59:01 has no hits.
BS07742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:15 Download gff for
BS07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-PA | 1..959 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:43 Download gff for
BS07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5711-PA | 1..959 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:07 Download gff for
BS07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 110..1078 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:05 Download gff for
BS07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 110..1078 | 9..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:05 Download gff for
BS07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18078378..18078496 | 9..125 | 96 | -> | Plus |
2L | 18078916..18079723 | 126..933 | 99 | -> | Plus |
2L | 18079957..18079998 | 934..975 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:07 Download gff for
BS07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18078916..18079723 | 126..933 | 99 | -> | Plus |
arm_2L | 18078378..18078496 | 9..125 | 96 | -> | Plus |
arm_2L | 18079957..18079998 | 934..975 | 100 | | Plus |
BS07742.complete Sequence
1127 bp (1127 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635969
> BS07742.complete
GAAGTTATCAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTT
CCCCGAACAACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGAT
TCCGTGACTCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGA
GTACGTGCGCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCC
GATATGGGCGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAA
CTGACCCTGGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCA
GTTGACCAAGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCT
ATCCCTTCGTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTC
CAGCAGAAGGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGT
AAAGATCTTTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCA
CCATTAACCTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGC
ATCCAGCCCTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGA
GCTCGAACTGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGA
AGATCTCGGTGAACATCTGCGTGCGCAACAACTCCAACAAGGTGGTGAAG
AAGATCAAGGCCATGGTGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAA
CGGTCAGTTCCGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTC
CCCTGAACCCGGGATCCAGCCTGCAGAAGGTCATGTATCTGGTGCCCACC
CTGGTGGCCAATTGCGACCGCGCAGGCATCGCCGTTGAGGGTGATATCAA
GCGCAAAGACACAGCTCTGGCCTCGACCACACTTATTGCCAGTCAGGATG
CGAGGGATGCCTTTGGCATAATTGTTTCATATGCTGTGAAGGTCAAGCTT
TTCTTGGGAGCCCTGGGCGGCGAGCTCTGCGCTGAGCTACCATTTATTCT
GATGCACCCGAAGCCAAGTCGCAAGGCCCAACTGGAAGCCGAGGGCTCCA
TTGAGGCCTAAAAGCTTTCTAGACCAT
BS07742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arr1-RB | 1095 | CG5711-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Arr1-RA | 1095 | CG5711-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Arr1-RC | 1053 | CG5711-PC | 68..1053 | 126..1111 | 4930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arr1-RB | 2327 | CG5711-RB | 120..1215 | 17..1112 | 5480 | 100 | Plus |
Arr1-RA | 1435 | CG5711-RA | 120..1215 | 17..1112 | 5480 | 100 | Plus |
Arr1-RC | 1356 | CG5711-RC | 150..1136 | 126..1112 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18078915..18079723 | 125..933 | 4045 | 100 | Plus |
2L | 23513712 | 2L | 18079957..18080086 | 934..1063 | 650 | 100 | Plus |
2L | 23513712 | 2L | 18078388..18078496 | 17..125 | 545 | 100 | Plus |
2L | 23513712 | 2L | 18080145..18080195 | 1062..1112 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:14:23 has no hits.
BS07742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:32 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:22 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 113..1220 | 9..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:09 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 120..1212 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:32 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 113..1220 | 9..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:07 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arr1-RA | 120..1212 | 17..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:07 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18078388..18078496 | 17..125 | 100 | -> | Plus |
2L | 18078916..18079723 | 126..933 | 100 | -> | Plus |
2L | 18079957..18080086 | 934..1063 | 100 | -> | Plus |
2L | 18080147..18080192 | 1064..1109 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:09 Download gff for
BS07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18078388..18078496 | 17..125 | 100 | -> | Plus |
arm_2L | 18078916..18079723 | 126..933 | 100 | -> | Plus |
arm_2L | 18079957..18080086 | 934..1063 | 100 | -> | Plus |
arm_2L | 18080147..18080192 | 1064..1109 | 100 | | Plus |
BS07742.pep Sequence
Translation from 16 to 1110
> BS07742.pep
MVVNFKVFKKCSPNNMITLYMNRRDFVDSVTQVEPIDGIIVLDDEYVRQN
RKIFVQLVCNFRYGREDDEMIGLRFQKELTLVSQQVCPPQKQDIQLTKMQ
ERLLKKLGSNAYPFVMQMPPSSPASVVLQQKASDESQPCGVQYFVKIFTG
DSDCDRSHRRSTINLGIRKVQYAPTKQGIQPCTVVRKDFLLSPGELELEV
TLDKQLYHHGEKISVNICVRNNSNKVVKKIKAMVQQGVDVVLFQNGQFRN
TIAFMETSEGCPLNPGSSLQKVMYLVPTLVANCDRAGIAVEGDIKRKDTA
LASTTLIASQDARDAFGIIVSYAVKVKLFLGALGGELCAELPFILMHPKP
SRKAQLEAEGSIEA*
BS07742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arr1-PB | 364 | CG5711-PB | 1..364 | 1..364 | 1866 | 100 | Plus |
Arr1-PA | 364 | CG5711-PA | 1..364 | 1..364 | 1866 | 100 | Plus |
Arr1-PC | 350 | CG5711-PC | 21..350 | 35..364 | 1676 | 99.4 | Plus |
krz-PB | 470 | CG1487-PB | 48..396 | 6..353 | 931 | 50.6 | Plus |
krz-PA | 470 | CG1487-PA | 48..396 | 6..353 | 931 | 50.6 | Plus |