Clone BS07742 Report

Search the DGRC for BS07742

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptArr1-RA
Protein status:BS07742.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07742.3prime Sequence

891 bp (818 high quality bases) assembled on 2006-01-06

> BS07742.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCAATGGAGCCCTCGGCTTCCAGTTGG
GCCTTGCGACTTGGCTTCGGGTGCATCAGAATAAATGGTAGCTCAGCGCA
GAGCTCGCCGCCCAGGGCTCCCAAGAAAAGCTTGACCTTCACAGCATATG
AAACAATTATGCCAAAGGCATCCCTCGCATCCTGACTGGCAATAAGTGTG
GTCGAGGCCAGAGCTGTGTCTTTGCGCTTGATATCACCCTCAACGGCGAT
GCCTGCGCGGTCGCAATTGGCCACCAGGGTGGGCACCAGATACATGACCT
TCTGCAGGCTGGATCCCGGGTTCAGGGGACATCCCTCGCTCGTCTCCATG
AAGGCGATCGTGTTGCGGAACTGACCGTTCTGGAACAGGACCACATCGAC
GCCCTGCTGCACCATGGCCTTGATCTTCTTCACCACCTTGTTGGAGTTGT
TGCGCACGCAGATGTTCACCGAGATCTTCTCGCCGTGATGGTACAGCTGC
TTGTCGAGGGTGACCTCCAGTTCGAGCTCTCCGGGCGACAGAAGGAAGTC
CTTGCGAACGACGGTGCAGGGCTGGATGCCCTGCTTGGTCGGTGCGTACT
GCACCTTGCGGATGCCCAGGTTAATGGTGCTCCTGCGATGCGATCGATCG
CAGTCGCTGTCTCCGGTAAAGATCTTTACGAAGTACTGGACTCCGCAGGG
CTGGCTCTCGTCACTGGCCTTCTGCTGGAGAACCACCGAGGCCGGCGAGC
TTGGTGGCATCTGCATCACGAAGGGATAGGCATTGGAGCCAAGCTTCTTC
AGCAGACGCTCCTGCATCTTGGTCAACTGGATGTCCTGCTTCTGGGGTGG
GCACACCTGCTGCGAGACCAGGGTCAGTTCCTTCTGGGACC

BS07742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5711-PA 1095 Arr1-RA 225..1095 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Arr1-RC 1356 CG5711-RC 261..1136 891..16 4365 99.9 Minus
Arr1-RB 2327 CG5711-RB 340..1215 891..16 4365 99.9 Minus
Arr1-RA 1435 CG5711-RA 340..1215 891..16 4365 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18079027..18079723 891..195 3470 99.9 Minus
2L 23513712 2L 18079957..18080086 194..65 650 100 Minus
2L 23513712 2L 18080145..18080195 66..16 255 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:06:26 has no hits.

BS07742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:14 Download gff for BS07742.3prime
Subject Subject Range Query Range Percent Splice Strand
Arr1-PA 221..1095 17..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:42 Download gff for BS07742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5711-PA 221..1095 17..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:38 Download gff for BS07742.3prime
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 340..1217 12..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:56 Download gff for BS07742.3prime
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 340..1217 12..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:56 Download gff for BS07742.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18079027..18079723 195..891 99 -> Minus
2L 18079957..18080086 65..194 100 -> Minus
2L 18080147..18080197 12..64 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:38 Download gff for BS07742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18079027..18079723 195..891 99 -> Minus
arm_2L 18079957..18080086 65..194 100 -> Minus
arm_2L 18080147..18080197 12..64 96   Minus

BS07742.5prime Sequence

975 bp (823 high quality bases) assembled on 2006-01-06

> BS07742.5prime
GAAGTTATCAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTT
CCCCGAACAACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGAT
TCCGTGACTCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGA
GTACGTGCGCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCC
GATATGGGCGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAA
CTGACCCTGGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCA
GTTGACCAAGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCT
ATCCCTTCGTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTC
CAGCAGAAGGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGT
AAAGATCTTTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCA
CCATTAACCTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGC
ATCCAGCCCTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGA
GCTCGAACTGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGA
AGATCTCGGTGAACATCTGCGTGCGCAACAACTCCAACAAGGTGGTGAAG
AAGATCAAGGCCATGGTGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAA
CGGTCAGTTCCGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTC
CCCTGAACCCGGGATCCAGCCTGCAGAANGTCATGTATCTGGGTGCCACC
CTGGTGGCCAATTGCGACCGCGCAGGCATCGCCGTTGAGGGTGATATCAA
GCGCAAAGACACAGCTCTGGGCTCGACCACACTTATTGCCAGTCAGGATG
CGAGGGATGCCTTTGGCATAATTGT

BS07742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5711-PA 1095 Arr1-RA 1..826 17..842 4111 99.8 Plus
CG5711-PA 1095 Arr1-RA 830..959 846..975 625 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Arr1-RB 2327 CG5711-RB 120..1078 17..975 4724 99.6 Plus
Arr1-RA 1435 CG5711-RA 120..1078 17..975 4724 99.6 Plus
Arr1-RC 1356 CG5711-RC 150..999 126..975 4179 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18078915..18079723 125..933 3974 99.4 Plus
2L 23513712 2L 18078388..18078496 17..125 545 100 Plus
2L 23513712 2L 18079957..18079998 934..975 210 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:59:01 has no hits.

BS07742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:15 Download gff for BS07742.5prime
Subject Subject Range Query Range Percent Splice Strand
Arr1-PA 1..959 17..975 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:43 Download gff for BS07742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5711-PA 1..959 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:07 Download gff for BS07742.5prime
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 110..1078 9..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:05 Download gff for BS07742.5prime
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 110..1078 9..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:05 Download gff for BS07742.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18078378..18078496 9..125 96 -> Plus
2L 18078916..18079723 126..933 99 -> Plus
2L 18079957..18079998 934..975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:07 Download gff for BS07742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18078916..18079723 126..933 99 -> Plus
arm_2L 18078378..18078496 9..125 96 -> Plus
arm_2L 18079957..18079998 934..975 100   Plus

BS07742.complete Sequence

1127 bp (1127 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635969

> BS07742.complete
GAAGTTATCAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTT
CCCCGAACAACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGAT
TCCGTGACTCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGA
GTACGTGCGCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCC
GATATGGGCGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAA
CTGACCCTGGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCA
GTTGACCAAGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCT
ATCCCTTCGTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTC
CAGCAGAAGGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGT
AAAGATCTTTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCA
CCATTAACCTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGC
ATCCAGCCCTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGA
GCTCGAACTGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGA
AGATCTCGGTGAACATCTGCGTGCGCAACAACTCCAACAAGGTGGTGAAG
AAGATCAAGGCCATGGTGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAA
CGGTCAGTTCCGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTC
CCCTGAACCCGGGATCCAGCCTGCAGAAGGTCATGTATCTGGTGCCCACC
CTGGTGGCCAATTGCGACCGCGCAGGCATCGCCGTTGAGGGTGATATCAA
GCGCAAAGACACAGCTCTGGCCTCGACCACACTTATTGCCAGTCAGGATG
CGAGGGATGCCTTTGGCATAATTGTTTCATATGCTGTGAAGGTCAAGCTT
TTCTTGGGAGCCCTGGGCGGCGAGCTCTGCGCTGAGCTACCATTTATTCT
GATGCACCCGAAGCCAAGTCGCAAGGCCCAACTGGAAGCCGAGGGCTCCA
TTGAGGCCTAAAAGCTTTCTAGACCAT

BS07742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Arr1-RB 1095 CG5711-PB 1..1095 17..1111 5475 100 Plus
Arr1-RA 1095 CG5711-PA 1..1095 17..1111 5475 100 Plus
Arr1-RC 1053 CG5711-PC 68..1053 126..1111 4930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Arr1-RB 2327 CG5711-RB 120..1215 17..1112 5480 100 Plus
Arr1-RA 1435 CG5711-RA 120..1215 17..1112 5480 100 Plus
Arr1-RC 1356 CG5711-RC 150..1136 126..1112 4935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18078915..18079723 125..933 4045 100 Plus
2L 23513712 2L 18079957..18080086 934..1063 650 100 Plus
2L 23513712 2L 18078388..18078496 17..125 545 100 Plus
2L 23513712 2L 18080145..18080195 1062..1112 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:14:23 has no hits.

BS07742.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:32 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 1..1095 17..1111 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:22 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 113..1220 9..1116 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:09 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 120..1212 17..1109 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:32 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 113..1220 9..1116 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:07 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
Arr1-RA 120..1212 17..1109 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:07 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18078388..18078496 17..125 100 -> Plus
2L 18078916..18079723 126..933 100 -> Plus
2L 18079957..18080086 934..1063 100 -> Plus
2L 18080147..18080192 1064..1109 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:09 Download gff for BS07742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18078388..18078496 17..125 100 -> Plus
arm_2L 18078916..18079723 126..933 100 -> Plus
arm_2L 18079957..18080086 934..1063 100 -> Plus
arm_2L 18080147..18080192 1064..1109 100   Plus

BS07742.pep Sequence

Translation from 16 to 1110

> BS07742.pep
MVVNFKVFKKCSPNNMITLYMNRRDFVDSVTQVEPIDGIIVLDDEYVRQN
RKIFVQLVCNFRYGREDDEMIGLRFQKELTLVSQQVCPPQKQDIQLTKMQ
ERLLKKLGSNAYPFVMQMPPSSPASVVLQQKASDESQPCGVQYFVKIFTG
DSDCDRSHRRSTINLGIRKVQYAPTKQGIQPCTVVRKDFLLSPGELELEV
TLDKQLYHHGEKISVNICVRNNSNKVVKKIKAMVQQGVDVVLFQNGQFRN
TIAFMETSEGCPLNPGSSLQKVMYLVPTLVANCDRAGIAVEGDIKRKDTA
LASTTLIASQDARDAFGIIVSYAVKVKLFLGALGGELCAELPFILMHPKP
SRKAQLEAEGSIEA*

BS07742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Arr1-PB 364 CG5711-PB 1..364 1..364 1866 100 Plus
Arr1-PA 364 CG5711-PA 1..364 1..364 1866 100 Plus
Arr1-PC 350 CG5711-PC 21..350 35..364 1676 99.4 Plus
krz-PB 470 CG1487-PB 48..396 6..353 931 50.6 Plus
krz-PA 470 CG1487-PA 48..396 6..353 931 50.6 Plus