Clone BS07744 Report

Search the DGRC for BS07744

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG8199-RA
Protein status:BS07744.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07744.3prime Sequence

898 bp (804 high quality bases) assembled on 2006-01-06

> BS07744.3prime
ATGGTCTAGAAAGCTTCTATTTCTCAAAGTCCTTCAAGGGATAGTGCTCC
TTGTGGGCCTCGATATGTTTTTCCAGCTCGCTACGCTGCTCAATCAAATG
ATCCGGCATCTCCGCGTAGACGCCTTCGAACATCTCACGCCAGTTGGGCT
TGAGTTTCTTCTCGGACACTGCGATCTGCTTCAAAACCTTTTTCCTTATG
TCCTTGACATATTCGTTTTCGACAGTCTCGTCAAACCAGCCTTTGTGCAC
CATGTAGCGCTTAAGCTTGGATATTGGGTGCTCCACCGAGTTCCAAATCT
CGATCTCCTCCGCTGGTCGGTAGGCTGTACTATCATCTGAGGTGGAATGG
TGACCCACTCGATAGGCCAGTGCCTCGAACACCACCGGCTTGTTCTCCTT
GAGGACATACTCCCTGGCAGCCTTCATCGCATTATAGACGGCGAAGACGT
CTGTGCCATCCACTCGAATGGTAGTAATTCCATAGCCCATAGGTCCGCGA
CCGGCGATTCCATCGCCCTTGTACTGTTCATGCGATGGTGTGGATATGGC
AAAGCCGTTGTTTCGACAGAAGAGGATAGCCGGACAACCCAAAGTGGCAG
CAAAGTTAAAGGCAGCATGTGCATCTCCCTCGGAAGCAGCTCCCTCACCA
AAGTAACAGACCACACAGGCATCGTTGTTTGGCCTCAATTTCATGGCGTA
GGCGGCACCAACGGCCTGGGGCATTTGGGTGGAAAGCGGACTGGAGATGG
TGACAAAGTTAAGTTCCCTTGAGCCGTAGTGGACGGGCATCTGCTTGCCG
CGACCCAAGTCGTCCGTGTTGCCGTAGCACTGATCGATAAACTGGTCGAT
ACGGAAGCCACGCCCAAACCAAAACACCCGCTTCACGATACTGCCCGT

BS07744.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 1320 CG8199-RA 473..1320 864..17 4240 100 Minus
CG8199-PA 1320 CG8199-RA 440..474 898..864 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1750 CG8199-RA 530..1411 898..16 4375 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556886..9557437 567..16 2760 100 Minus
3R 32079331 3R 9556605..9556770 732..567 830 100 Minus
3R 32079331 3R 9556374..9556538 898..733 765 98.8 Minus
Blast to na_te.dros performed on 2015-02-12 00:21:53 has no hits.

BS07744.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:18 Download gff for BS07744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 440..1320 17..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:48 Download gff for BS07744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 440..1320 17..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:14 Download gff for BS07744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 530..1411 16..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:07 Download gff for BS07744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 530..1411 16..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:07 Download gff for BS07744.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9556605..9556770 567..732 100 -> Minus
3R 9556374..9556538 733..898 98 -> Minus
3R 9556887..9557437 16..566 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:14 Download gff for BS07744.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5382096..5382260 733..898 98 -> Minus
arm_3R 5382327..5382492 567..732 100 -> Minus
arm_3R 5382609..5383159 16..566 100   Minus

BS07744.5prime Sequence

897 bp (831 high quality bases) assembled on 2006-01-06

> BS07744.5prime
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAAGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATACTACCATTCGAGTGGATGGC

BS07744.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 1320 CG8199-RA 1..860 17..876 4275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1750 CG8199-RA 90..972 16..897 4375 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556003..9556538 85..620 2680 100 Plus
3R 32079331 3R 9556605..9556770 621..786 830 100 Plus
3R 32079331 3R 9556886..9556998 786..897 500 98.2 Plus
3R 32079331 3R 9555874..9555943 16..85 350 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:18:47 has no hits.

BS07744.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:19 Download gff for BS07744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:50 Download gff for BS07744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:44 Download gff for BS07744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 90..972 16..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:35 Download gff for BS07744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 90..972 16..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:35 Download gff for BS07744.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9555874..9555943 16..85 100 -> Plus
3R 9556004..9556538 86..620 100 -> Plus
3R 9556605..9556770 621..786 100 -> Plus
3R 9556887..9556998 787..897 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:44 Download gff for BS07744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5382609..5382720 787..897 98   Plus
arm_3R 5381596..5381665 16..85 100 -> Plus
arm_3R 5381726..5382260 86..620 100 -> Plus
arm_3R 5382327..5382492 621..786 100 -> Plus

BS07744.complete Sequence

1352 bp (1352 high quality bases) assembled on 2005-12-21

GenBank Submission: MN238600

> BS07744.complete
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCAC
AGACGTCTTCGCCGTCTATAATGCGATGAAGGCTGCCAGGGAGTATGTCC
TCAAGGAGAACAAGCCGGTGGTGTTCGAGGCACTGGCCTATCGAGTGGGT
CACCATTCCACCTCAGATGATAGTACAGCCTACCGACCAGCGGAGGAGAT
CGAGATTTGGAACTCGGTGGAGCACCCAATATCCAAGCTTAAGCGCTACA
TGGTGCACAAAGGCTGGTTTGACGAGACTGTCGAAAACGAATATGTCAAG
GACATAAGGAAAAAGGTTTTGAAGCAGATCGCAGTGTCCGAGAAGAAACT
CAAGCCCAACTGGCGTGAGATGTTCGAAGGCGTCTACGCGGAGATGCCGG
ATCATTTGATTGAGCAGCGTAGCGAGCTGGAAAAACATATCGAGGCCCAC
AAGGAGCACTATCCCTTGAAGGACTTTGAGAAATAGAAGCTTTCTAGACC
AT

BS07744.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1320 CG8199-PA 1..1320 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1750 CG8199-RA 90..1411 16..1337 6610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556886..9557437 786..1337 2760 100 Plus
3R 32079331 3R 9556003..9556538 85..620 2680 100 Plus
3R 32079331 3R 9556605..9556770 621..786 830 100 Plus
3R 32079331 3R 9555874..9555943 16..85 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:04:57 has no hits.

BS07744.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:24 Download gff for BS07744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 80..1401 16..1337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:24 Download gff for BS07744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 91..1404 17..1330 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:33 Download gff for BS07744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 80..1401 16..1337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:30 Download gff for BS07744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 91..1404 17..1330 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:30 Download gff for BS07744.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9555875..9555943 17..85 100 -> Plus
3R 9556004..9556538 86..620 100 -> Plus
3R 9556605..9556770 621..786 100 -> Plus
3R 9556887..9557430 787..1330 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:24 Download gff for BS07744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5381597..5381665 17..85 100 -> Plus
arm_3R 5381726..5382260 86..620 100 -> Plus
arm_3R 5382327..5382492 621..786 100 -> Plus
arm_3R 5382609..5383152 787..1330 100   Plus

BS07744.pep Sequence

Translation from 16 to 1335

> BS07744.pep
MSFLRKSVHLLGSVARRQRHLKVIEGAISTAARDFSSKPSEDYANFPGAK
APFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRD
MVLLNTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQY
REAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSP
LSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAATLG
CPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMGYGITTIRVDGTDVFAV
YNAMKAAREYVLKENKPVVFEALAYRVGHHSTSDDSTAYRPAEEIEIWNS
VEHPISKLKRYMVHKGWFDETVENEYVKDIRKKVLKQIAVSEKKLKPNWR
EMFEGVYAEMPDHLIEQRSELEKHIEAHKEHYPLKDFEK*

BS07744.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 439 CG8199-PA 1..439 1..439 2310 100 Plus
l(1)G0334-PB 328 CG7010-PB 29..278 128..388 262 31.4 Plus
l(1)G0334-PD 399 CG7010-PD 100..349 128..388 262 31.4 Plus
l(1)G0334-PA 399 CG7010-PA 100..349 128..388 262 31.4 Plus
l(1)G0334-PC 443 CG7010-PC 144..393 128..388 262 31.4 Plus