Clone Sequence Records
BS07744.3prime Sequence
898 bp (804 high quality bases) assembled on 2006-01-06
> BS07744.3prime
ATGGTCTAGAAAGCTTCTATTTCTCAAAGTCCTTCAAGGGATAGTGCTCC
TTGTGGGCCTCGATATGTTTTTCCAGCTCGCTACGCTGCTCAATCAAATG
ATCCGGCATCTCCGCGTAGACGCCTTCGAACATCTCACGCCAGTTGGGCT
TGAGTTTCTTCTCGGACACTGCGATCTGCTTCAAAACCTTTTTCCTTATG
TCCTTGACATATTCGTTTTCGACAGTCTCGTCAAACCAGCCTTTGTGCAC
CATGTAGCGCTTAAGCTTGGATATTGGGTGCTCCACCGAGTTCCAAATCT
CGATCTCCTCCGCTGGTCGGTAGGCTGTACTATCATCTGAGGTGGAATGG
TGACCCACTCGATAGGCCAGTGCCTCGAACACCACCGGCTTGTTCTCCTT
GAGGACATACTCCCTGGCAGCCTTCATCGCATTATAGACGGCGAAGACGT
CTGTGCCATCCACTCGAATGGTAGTAATTCCATAGCCCATAGGTCCGCGA
CCGGCGATTCCATCGCCCTTGTACTGTTCATGCGATGGTGTGGATATGGC
AAAGCCGTTGTTTCGACAGAAGAGGATAGCCGGACAACCCAAAGTGGCAG
CAAAGTTAAAGGCAGCATGTGCATCTCCCTCGGAAGCAGCTCCCTCACCA
AAGTAACAGACCACACAGGCATCGTTGTTTGGCCTCAATTTCATGGCGTA
GGCGGCACCAACGGCCTGGGGCATTTGGGTGGAAAGCGGACTGGAGATGG
TGACAAAGTTAAGTTCCCTTGAGCCGTAGTGGACGGGCATCTGCTTGCCG
CGACCCAAGTCGTCCGTGTTGCCGTAGCACTGATCGATAAACTGGTCGAT
ACGGAAGCCACGCCCAAACCAAAACACCCGCTTCACGATACTGCCCGT
BS07744.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-PA | 1320 | CG8199-RA | 473..1320 | 864..17 | 4240 | 100 | Minus |
CG8199-PA | 1320 | CG8199-RA | 440..474 | 898..864 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1750 | CG8199-RA | 530..1411 | 898..16 | 4375 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9556886..9557437 | 567..16 | 2760 | 100 | Minus |
3R | 32079331 | 3R | 9556605..9556770 | 732..567 | 830 | 100 | Minus |
3R | 32079331 | 3R | 9556374..9556538 | 898..733 | 765 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:21:53 has no hits.
BS07744.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:18 Download gff for
BS07744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 440..1320 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:48 Download gff for
BS07744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 440..1320 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:43:14 Download gff for
BS07744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 530..1411 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:07 Download gff for
BS07744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 530..1411 | 16..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:07 Download gff for
BS07744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9556605..9556770 | 567..732 | 100 | -> | Minus |
3R | 9556374..9556538 | 733..898 | 98 | -> | Minus |
3R | 9556887..9557437 | 16..566 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:43:14 Download gff for
BS07744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5382096..5382260 | 733..898 | 98 | -> | Minus |
arm_3R | 5382327..5382492 | 567..732 | 100 | -> | Minus |
arm_3R | 5382609..5383159 | 16..566 | 100 | | Minus |
BS07744.5prime Sequence
897 bp (831 high quality bases) assembled on 2006-01-06
> BS07744.5prime
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAAGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATACTACCATTCGAGTGGATGGC
BS07744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-PA | 1320 | CG8199-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1750 | CG8199-RA | 90..972 | 16..897 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9556003..9556538 | 85..620 | 2680 | 100 | Plus |
3R | 32079331 | 3R | 9556605..9556770 | 621..786 | 830 | 100 | Plus |
3R | 32079331 | 3R | 9556886..9556998 | 786..897 | 500 | 98.2 | Plus |
3R | 32079331 | 3R | 9555874..9555943 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:18:47 has no hits.
BS07744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:19 Download gff for
BS07744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:50 Download gff for
BS07744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:44 Download gff for
BS07744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 90..972 | 16..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:35 Download gff for
BS07744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 90..972 | 16..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:35 Download gff for
BS07744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9555874..9555943 | 16..85 | 100 | -> | Plus |
3R | 9556004..9556538 | 86..620 | 100 | -> | Plus |
3R | 9556605..9556770 | 621..786 | 100 | -> | Plus |
3R | 9556887..9556998 | 787..897 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:44 Download gff for
BS07744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5382609..5382720 | 787..897 | 98 | | Plus |
arm_3R | 5381596..5381665 | 16..85 | 100 | -> | Plus |
arm_3R | 5381726..5382260 | 86..620 | 100 | -> | Plus |
arm_3R | 5382327..5382492 | 621..786 | 100 | -> | Plus |
BS07744.complete Sequence
1352 bp (1352 high quality bases) assembled on 2005-12-21
GenBank Submission: MN238600
> BS07744.complete
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCAC
AGACGTCTTCGCCGTCTATAATGCGATGAAGGCTGCCAGGGAGTATGTCC
TCAAGGAGAACAAGCCGGTGGTGTTCGAGGCACTGGCCTATCGAGTGGGT
CACCATTCCACCTCAGATGATAGTACAGCCTACCGACCAGCGGAGGAGAT
CGAGATTTGGAACTCGGTGGAGCACCCAATATCCAAGCTTAAGCGCTACA
TGGTGCACAAAGGCTGGTTTGACGAGACTGTCGAAAACGAATATGTCAAG
GACATAAGGAAAAAGGTTTTGAAGCAGATCGCAGTGTCCGAGAAGAAACT
CAAGCCCAACTGGCGTGAGATGTTCGAAGGCGTCTACGCGGAGATGCCGG
ATCATTTGATTGAGCAGCGTAGCGAGCTGGAAAAACATATCGAGGCCCAC
AAGGAGCACTATCCCTTGAAGGACTTTGAGAAATAGAAGCTTTCTAGACC
AT
BS07744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1320 | CG8199-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1750 | CG8199-RA | 90..1411 | 16..1337 | 6610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9556886..9557437 | 786..1337 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 9556003..9556538 | 85..620 | 2680 | 100 | Plus |
3R | 32079331 | 3R | 9556605..9556770 | 621..786 | 830 | 100 | Plus |
3R | 32079331 | 3R | 9555874..9555943 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:04:57 has no hits.
BS07744.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:24 Download gff for
BS07744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 80..1401 | 16..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:24 Download gff for
BS07744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 91..1404 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:33 Download gff for
BS07744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 80..1401 | 16..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:30 Download gff for
BS07744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 91..1404 | 17..1330 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:30 Download gff for
BS07744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9555875..9555943 | 17..85 | 100 | -> | Plus |
3R | 9556004..9556538 | 86..620 | 100 | -> | Plus |
3R | 9556605..9556770 | 621..786 | 100 | -> | Plus |
3R | 9556887..9557430 | 787..1330 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:24 Download gff for
BS07744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5381597..5381665 | 17..85 | 100 | -> | Plus |
arm_3R | 5381726..5382260 | 86..620 | 100 | -> | Plus |
arm_3R | 5382327..5382492 | 621..786 | 100 | -> | Plus |
arm_3R | 5382609..5383152 | 787..1330 | 100 | | Plus |
BS07744.pep Sequence
Translation from 16 to 1335
> BS07744.pep
MSFLRKSVHLLGSVARRQRHLKVIEGAISTAARDFSSKPSEDYANFPGAK
APFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRD
MVLLNTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQY
REAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSP
LSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAATLG
CPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMGYGITTIRVDGTDVFAV
YNAMKAAREYVLKENKPVVFEALAYRVGHHSTSDDSTAYRPAEEIEIWNS
VEHPISKLKRYMVHKGWFDETVENEYVKDIRKKVLKQIAVSEKKLKPNWR
EMFEGVYAEMPDHLIEQRSELEKHIEAHKEHYPLKDFEK*
BS07744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-PA | 439 | CG8199-PA | 1..439 | 1..439 | 2310 | 100 | Plus |
l(1)G0334-PB | 328 | CG7010-PB | 29..278 | 128..388 | 262 | 31.4 | Plus |
l(1)G0334-PD | 399 | CG7010-PD | 100..349 | 128..388 | 262 | 31.4 | Plus |
l(1)G0334-PA | 399 | CG7010-PA | 100..349 | 128..388 | 262 | 31.4 | Plus |
l(1)G0334-PC | 443 | CG7010-PC | 144..393 | 128..388 | 262 | 31.4 | Plus |