Clone Sequence Records
BS07745.3prime Sequence
903 bp (812 high quality bases) assembled on 2006-01-06
> BS07745.3prime
ATGGTCTAGAAAGCTTTCATCGTCTTAATTCCCATCCCCATCCCCACACT
TGTCCCAAGCCCAATCCCCGATTCATTCCGGCTACGGAAATCGAACCGGA
GATGCAAACGTACACTAGAAATAACACAACCATTGTGGAGGCGTTGGCCT
TTTGGCGGCTTCCGTTCGCATGCTGCATGGCGGCTGGCTCCTCACCGTTC
AGCACATGCACCACCACCGTCTCCGTAATCTCATTGCCCAGCATGCAGGT
GTAGTTGCCCGTGTCCTGGCGATTGGCATTGGCGATATACAGGCGACTCA
GAGCTCGTCCTGGCAGCATGTCCGTCTTGACACTGATTCCTCCGCGACTA
GTATCGTAGTTGAGCAGGCGCGGTCCGTGCCGCCAGGTGATATAGGAGGA
GGGATGCGGAATCTTCGAAATGACGCACTGCAGCTCGATGGTGCTGCCAG
CCTTGTAGTACTTCTCCGGCGTGGCCGAGCCCCGCTCGTCGAGTATCTCC
ACGTGAGGAACAATTATAGTAAGGTAAACGAGCAGGACGAGCGGCGGATG
CGAGGACACCTGGCACTCGTAGGGACCCTCGTCCCGCTCGTTGGCGAACT
GGATGAGCAGCTTCCAATCGTTGGGCTCCTCGAACTCCAGCGAATACCGC
GAGTCGCCGCTATATGTGTGCTGGCCAAAGGTTATCAGGGTGAGATCATC
GCCACGGCGACGCATCCAGGACACCGTCTTGCCCTGCAGATCGTTCACCC
GGCAGTGCAGATAAACGCTGGACGAGAGCTGGGTGCTGATGTTCAGCGTG
GTGTACGGATCGGCGAAGAACGGGAACGGCTCGTGGGTGGTCGTCTCGGT
GACCTCCAGCTCCTCATCCTCGGGCGTGTCGGTGAACGGCGATGAGAACT
CCT
BS07745.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10946-PA | 1023 | dpr14-RA | 137..1023 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 3794 | CG10946-RB | 796..1682 | 903..17 | 4435 | 100 | Minus |
dpr14-RA | 1668 | CG10946-RA | 613..1499 | 903..17 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7906500..7906892 | 511..903 | 1965 | 100 | Plus |
X | 23542271 | X | 7905816..7905995 | 17..196 | 900 | 100 | Plus |
X | 23542271 | X | 7906249..7906427 | 333..511 | 895 | 100 | Plus |
X | 23542271 | X | 7906043..7906184 | 194..335 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:04:29 has no hits.
BS07745.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:20 Download gff for
BS07745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-PA | 137..1023 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:51 Download gff for
BS07745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10946-PA | 137..1023 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:08 Download gff for
BS07745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 613..1499 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:43 Download gff for
BS07745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 613..1499 | 17..903 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:43 Download gff for
BS07745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7905816..7905994 | 17..195 | 100 | <- | Plus |
X | 7906045..7906181 | 196..332 | 100 | <- | Plus |
X | 7906249..7906426 | 333..510 | 100 | <- | Plus |
X | 7906500..7906892 | 511..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:08 Download gff for
BS07745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7799849..7800027 | 17..195 | 100 | <- | Plus |
arm_X | 7800078..7800214 | 196..332 | 100 | <- | Plus |
arm_X | 7800282..7800459 | 333..510 | 100 | <- | Plus |
arm_X | 7800533..7800925 | 511..903 | 100 | | Plus |
BS07745.5prime Sequence
859 bp (836 high quality bases) assembled on 2006-01-09
> BS07745.5prime
GAAGTTATCAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTA
TATACTCCTCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTG
AAACGACCGCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTG
GCAGGAGTTCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGG
AGGTCACCGAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCG
TACACCACGCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCA
CTGCCGGGTGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCC
GTGGCGATGATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGC
GACTCGCGGTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCT
CATCCAGTTCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGT
CCTCGCATCCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCT
CACGTGGAGATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTA
CAAGGCTGGCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGC
ATCCCTCCTCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTAC
GATACTAGTCGCGGAGGAATCAGTGTCAAGACGGACATGCTGCCAGGACG
AGCTCTGAGTCGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCA
ACTACACCTGCATGCTGGGCAATGAGATTACGGAGACGGTGGTGGTGCAT
GTGCTGAAC
BS07745.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10946-PA | 1023 | dpr14-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 3794 | CG10946-RB | 660..1502 | 17..859 | 4215 | 100 | Plus |
dpr14-RA | 1668 | CG10946-RA | 477..1319 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7906500..7906946 | 545..99 | 2235 | 100 | Minus |
X | 23542271 | X | 7906249..7906427 | 723..545 | 895 | 100 | Minus |
X | 23542271 | X | 7906046..7906184 | 859..721 | 695 | 100 | Minus |
X | 23542271 | X | 7907257..7907338 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:55:40 has no hits.
BS07745.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:21 Download gff for
BS07745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:52 Download gff for
BS07745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10946-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:45 Download gff for
BS07745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 472..1319 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:56 Download gff for
BS07745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 472..1319 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:56 Download gff for
BS07745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7906046..7906181 | 724..859 | 100 | <- | Minus |
X | 7906249..7906426 | 546..723 | 100 | <- | Minus |
X | 7906500..7906946 | 99..545 | 100 | <- | Minus |
X | 7907257..7907343 | 9..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:45 Download gff for
BS07745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7800079..7800214 | 724..859 | 100 | <- | Minus |
arm_X | 7800282..7800459 | 546..723 | 100 | <- | Minus |
arm_X | 7800533..7800979 | 99..545 | 100 | <- | Minus |
arm_X | 7801290..7801376 | 9..98 | 96 | | Minus |
BS07745.complete Sequence
1055 bp (1055 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635970
> BS07745.complete
GAAGTTATCAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTA
TATACTCCTCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTG
AAACGACCGCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTG
GCAGGAGTTCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGG
AGGTCACCGAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCG
TACACCACGCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCA
CTGCCGGGTGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCC
GTGGCGATGATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGC
GACTCGCGGTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCT
CATCCAGTTCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGT
CCTCGCATCCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCT
CACGTGGAGATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTA
CAAGGCTGGCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGC
ATCCCTCCTCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTAC
GATACTAGTCGCGGAGGAATCAGTGTCAAGACGGACATGCTGCCAGGACG
AGCTCTGAGTCGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCA
ACTACACCTGCATGCTGGGCAATGAGATTACGGAGACGGTGGTGGTGCAT
GTGCTGAACGGTGAGGAGCCAGCCGCCATGCAGCATGCGAACGGAAGCCG
CCAAAAGGCCAACGCCTCCACAATGGTTGTGTTATTTCTAGTGTACGTTT
GCATCTCCGGTTCGATTTCCGTAGCCGGAATGAATCGGGGATTGGGCTTG
GGACAAGTGTGGGGATGGGGATGGGAATTAAGACGATGAAAGCTTTCTAG
ACCAT
BS07745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 1023 | CG10946-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
dpr14-RA | 1023 | CG10946-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-RB | 3794 | CG10946-RB | 660..1682 | 17..1039 | 5115 | 100 | Plus |
dpr14-RA | 1668 | CG10946-RA | 477..1499 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7906500..7906946 | 545..99 | 2235 | 100 | Minus |
X | 23542271 | X | 7905816..7905995 | 1039..860 | 900 | 100 | Minus |
X | 23542271 | X | 7906249..7906427 | 723..545 | 895 | 100 | Minus |
X | 23542271 | X | 7906043..7906184 | 862..721 | 710 | 100 | Minus |
X | 23542271 | X | 7907257..7907338 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:21 has no hits.
BS07745.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:55 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:10 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 439..1466 | 9..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:57 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 477..1498 | 17..1038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:55 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 439..1466 | 9..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:17 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr14-RA | 477..1498 | 17..1038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:17 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7906045..7906181 | 724..860 | 100 | <- | Minus |
X | 7906249..7906426 | 546..723 | 100 | <- | Minus |
X | 7905817..7905994 | 861..1038 | 100 | <- | Minus |
X | 7906500..7906946 | 99..545 | 100 | <- | Minus |
X | 7907257..7907338 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:57 Download gff for
BS07745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7800078..7800214 | 724..860 | 100 | <- | Minus |
arm_X | 7800282..7800459 | 546..723 | 100 | <- | Minus |
arm_X | 7799850..7800027 | 861..1038 | 100 | <- | Minus |
arm_X | 7800533..7800979 | 99..545 | 100 | <- | Minus |
arm_X | 7801290..7801371 | 17..98 | 100 | | Minus |
BS07745.pep Sequence
Translation from 16 to 1038
> BS07745.pep
MRSRLFWILAIIYSSLHHIGSGSTSTTLKRPRAGDPFDTFPKNFWQEFSS
PFTDTPEDEELEVTETTTHEPFPFFADPYTTLNISTQLSSSVYLHCRVND
LQGKTVSWMRRRGDDLTLITFGQHTYSGDSRYSLEFEEPNDWKLLIQFAN
ERDEGPYECQVSSHPPLVLLVYLTIIVPHVEILDERGSATPEKYYKAGST
IELQCVISKIPHPSSYITWRHGPRLLNYDTSRGGISVKTDMLPGRALSRL
YIANANRQDTGNYTCMLGNEITETVVVHVLNGEEPAAMQHANGSRQKANA
STMVVLFLVYVCISGSISVAGMNRGLGLGQVWGWGWELRR*
BS07745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr14-PB | 340 | CG10946-PB | 1..340 | 1..340 | 1816 | 100 | Plus |
dpr14-PA | 340 | CG10946-PA | 1..340 | 1..340 | 1816 | 100 | Plus |
dpr20-PA | 525 | CG12191-PA | 278..520 | 83..317 | 527 | 41.6 | Plus |
dpr6-PC | 390 | CG14162-PC | 62..305 | 64..314 | 441 | 40.2 | Plus |
dpr6-PF | 396 | CG14162-PF | 62..311 | 64..314 | 424 | 39.2 | Plus |